Wall clock time and date at job start Tue Mar 31 2020 10:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47361 * 2 1 4 4 N 1.30866 * 126.20485 * 275.36411 * 3 2 1 5 5 C 1.34574 * 107.28443 * 179.97438 * 4 3 2 6 6 C 1.47840 * 126.01873 * 180.02562 * 5 4 3 7 7 O 1.21558 * 120.00329 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99465 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99803 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.47166 * 324.99990 * 9 8 6 11 11 C 1.53003 * 109.47074 * 84.99922 * 9 8 6 12 12 C 1.50700 * 109.47412 * 204.99796 * 9 8 6 13 13 H 1.07994 * 119.99749 * 359.97438 * 12 9 8 14 14 C 1.37879 * 120.00039 * 180.02562 * 12 9 8 15 15 N 1.31513 * 119.99794 * 180.02562 * 14 12 9 16 16 Si 1.86802 * 119.99847 * 359.97438 * 14 12 9 17 17 H 1.48503 * 109.46763 * 90.00525 * 16 14 12 18 18 H 1.48501 * 109.46745 * 210.00100 * 16 14 12 19 19 H 1.48495 * 109.47551 * 330.00448 * 16 14 12 20 20 N 1.31555 * 107.95580 * 359.76200 * 5 4 3 21 21 N 1.28853 * 108.70787 * 0.39435 * 20 5 4 22 22 C 1.40142 * 125.77305 * 179.87910 * 21 20 5 23 23 C 1.38856 * 120.06444 * 224.10303 * 22 21 20 24 24 C 1.38117 * 119.93121 * 179.97438 * 23 22 21 25 25 C 1.38286 * 120.06657 * 359.97438 * 24 23 22 26 26 C 1.38284 * 120.13453 * 0.02562 * 25 24 23 27 27 C 1.38107 * 120.07016 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47170 * 64.96942 * 1 2 3 29 29 H 1.08993 * 109.47338 * 184.96734 * 1 2 3 30 30 H 1.08997 * 109.46904 * 304.97523 * 1 2 3 31 31 H 1.09003 * 109.46760 * 240.00258 * 2 1 3 32 32 H 1.08994 * 109.47103 * 120.00467 * 2 1 3 33 33 H 0.97000 * 120.00750 * 359.97438 * 8 6 5 34 34 H 1.08996 * 109.47563 * 180.02562 * 11 9 8 35 35 H 1.09002 * 109.46916 * 300.00135 * 11 9 8 36 36 H 1.08997 * 109.47475 * 59.99945 * 11 9 8 37 37 H 0.96997 * 119.99789 * 180.02562 * 15 14 12 38 38 H 1.07993 * 120.03496 * 359.97438 * 23 22 21 39 39 H 1.07999 * 119.96707 * 180.02562 * 24 23 22 40 40 H 1.07994 * 119.93167 * 179.72201 * 25 24 23 41 41 H 1.08006 * 119.96018 * 179.97438 * 26 25 24 42 42 H 1.08003 * 120.03766 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.1970 2.1825 -1.0513 5 6 2.6594 3.3693 -0.6168 6 6 2.9872 4.5369 -1.4623 7 8 2.8451 4.4735 -2.6679 8 7 3.4447 5.6713 -0.8964 9 6 3.7702 6.8282 -1.7342 10 1 4.1822 6.4851 -2.6833 11 6 2.5014 7.6429 -1.9938 12 6 4.7849 7.6902 -1.0283 13 1 5.1505 7.4050 -0.0529 14 6 5.2458 8.8434 -1.6272 15 7 6.1317 9.5953 -1.0113 16 14 4.6128 9.3370 -3.3140 17 1 3.4097 10.1938 -3.1599 18 1 5.6681 10.0909 -4.0374 19 1 4.2576 8.1189 -4.0854 20 7 2.7627 3.3092 0.6933 21 7 2.3934 2.1381 1.0837 22 6 2.3655 1.6879 2.4106 23 6 2.8459 0.4240 2.7266 24 6 2.8176 -0.0167 4.0352 25 6 2.3120 0.7996 5.0304 26 6 1.8329 2.0588 4.7188 27 6 1.8585 2.5052 3.4121 28 1 -0.3633 0.4348 -0.9311 29 1 -0.3633 -1.0237 0.0890 30 1 -0.3633 0.5891 0.8421 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.5585 5.7218 0.0656 34 1 2.7434 8.5035 -2.6175 35 1 1.7674 7.0195 -2.5045 36 1 2.0893 7.9860 -1.0449 37 1 6.4557 10.4068 -1.4325 38 1 3.2412 -0.2137 1.9499 39 1 3.1914 -0.9995 4.2817 40 1 2.2868 0.4511 6.0522 41 1 1.4383 2.6939 5.4982 42 1 1.4846 3.4889 3.1694 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265547551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:08 Heat of formation + Delta-G solvation = 90.492275 kcal Electronic energy + Delta-G solvation = -25369.196505 eV Core-core repulsion = 21737.690622 eV Total energy + Delta-G solvation = -3631.505883 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.68771 -39.68429 -38.77419 -35.09969 -34.80183 -34.53805 -32.40057 -31.53285 -30.94740 -30.31702 -29.12207 -25.27667 -24.97355 -24.81491 -23.16761 -22.57802 -21.07631 -20.91435 -19.58511 -18.39241 -17.70995 -16.84680 -16.79192 -16.08685 -15.52140 -15.17704 -14.99111 -14.78815 -14.58119 -14.33404 -14.02311 -13.89999 -13.40791 -13.13287 -12.98571 -12.81431 -12.52601 -12.17383 -12.15518 -11.89757 -11.81559 -11.73588 -11.32566 -11.22651 -10.79181 -10.72553 -10.41401 -10.15796 -9.79061 -9.74317 -9.52353 -9.39825 -9.21086 -8.94546 -8.73179 -8.17208 -6.17478 -4.20152 0.42149 0.80628 1.57390 2.04643 2.19509 3.16544 3.26951 3.38582 3.40489 3.44908 3.80674 4.06439 4.20989 4.31202 4.35139 4.40294 4.59921 4.77606 4.82755 4.84867 4.98063 4.99311 5.05801 5.17052 5.32784 5.42253 5.46389 5.62093 5.75607 5.78882 5.85448 5.94665 6.03909 6.21189 6.33562 6.36320 6.42694 6.57321 6.64355 6.86797 7.19858 7.25329 7.51323 7.92875 8.22627 8.52799 8.76991 8.87793 9.42478 10.94639 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018186 B = 0.003256 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.266152 B = 8596.232890 C = 9704.492043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C 0.217 3.783 4 N -0.452 5.452 5 C 0.167 3.833 6 C 0.600 3.400 7 O -0.525 6.525 8 N -0.680 5.680 9 C 0.238 3.762 10 H 0.053 0.947 11 C -0.163 4.163 12 C -0.534 4.534 13 H 0.082 0.918 14 C 0.079 3.921 15 N -0.892 5.892 16 Si 0.884 3.116 17 H -0.275 1.275 18 H -0.294 1.294 19 H -0.260 1.260 20 N -0.276 5.276 21 N -0.257 5.257 22 C 0.128 3.872 23 C -0.115 4.115 24 C -0.102 4.102 25 C -0.109 4.109 26 C -0.102 4.102 27 C -0.094 4.094 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.403 0.597 34 H 0.050 0.950 35 H 0.037 0.963 36 H 0.055 0.945 37 H 0.267 0.733 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.025 -22.452 13.246 28.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C -0.057 4.057 4 N -0.175 5.175 5 C -0.114 4.114 6 C 0.380 3.620 7 O -0.398 6.398 8 N -0.329 5.329 9 C 0.135 3.865 10 H 0.070 0.930 11 C -0.221 4.221 12 C -0.572 4.572 13 H 0.100 0.900 14 C -0.124 4.124 15 N -0.529 5.529 16 Si 0.714 3.286 17 H -0.202 1.202 18 H -0.221 1.221 19 H -0.185 1.185 20 N -0.113 5.113 21 N -0.047 5.047 22 C 0.038 3.962 23 C -0.135 4.135 24 C -0.121 4.121 25 C -0.128 4.128 26 C -0.121 4.121 27 C -0.114 4.114 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.237 0.763 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.818 -21.776 12.288 27.243 hybrid contribution -0.184 0.375 -0.204 0.465 sum -11.002 -21.401 12.084 26.927 Atomic orbital electron populations 1.21726 0.93053 1.02604 1.03091 1.20305 0.97356 0.85879 1.05024 1.25113 1.00619 0.98309 0.81704 1.71307 1.17542 1.01715 1.26962 1.24280 1.03740 0.95793 0.87555 1.16382 0.78981 0.80624 0.85989 1.90783 1.53605 1.82303 1.13124 1.46037 1.62881 1.12171 1.11825 1.19215 0.92861 0.82192 0.92250 0.92974 1.22465 0.99162 0.99634 1.00803 1.21015 1.23235 1.06930 1.06065 0.90032 1.24812 0.94371 0.95684 0.97578 1.69867 1.29972 1.14594 1.38438 0.86888 0.77721 0.79380 0.84619 1.20229 1.22108 1.18494 1.74447 1.19546 1.02612 1.14670 1.44336 1.44959 1.08862 1.06532 1.17540 1.03262 0.95175 0.80211 1.21115 0.99767 0.94580 0.98022 1.21050 0.99180 1.00393 0.91480 1.21370 0.97457 0.94036 0.99895 1.21148 0.99039 0.96303 0.95591 1.21172 0.98002 1.00041 0.92172 0.91373 0.91037 0.92671 0.87783 0.89170 0.76286 0.93207 0.94347 0.92636 0.92273 0.84615 0.84573 0.85002 0.84591 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.90 37.16 0.37 -0.76 16 2 C -0.05 -0.40 6.17 -27.88 -0.17 -0.57 16 3 C 0.22 3.02 7.04 -155.25 -1.09 1.92 16 4 N -0.45 -8.26 11.41 -8.47 -0.10 -8.35 16 5 C 0.17 3.29 7.96 -156.30 -1.24 2.04 16 6 C 0.60 13.51 7.79 -12.33 -0.10 13.41 16 7 O -0.52 -13.32 16.75 5.31 0.09 -13.23 16 8 N -0.68 -15.22 5.07 -55.87 -0.28 -15.50 16 9 C 0.24 5.97 2.15 -69.08 -0.15 5.82 16 10 H 0.05 1.42 6.63 -51.93 -0.34 1.07 16 11 C -0.16 -3.78 8.96 37.16 0.33 -3.45 16 12 C -0.53 -14.94 9.31 -34.44 -0.32 -15.26 16 13 H 0.08 2.40 7.98 -52.49 -0.42 1.98 16 14 C 0.08 2.27 5.45 -17.82 -0.10 2.17 16 15 N -0.89 -26.83 13.96 55.43 0.77 -26.05 16 16 Si 0.88 22.13 24.37 -169.99 -4.14 17.99 16 17 H -0.28 -6.65 6.87 56.52 0.39 -6.26 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 19 H -0.26 -6.48 6.53 56.52 0.37 -6.11 16 20 N -0.28 -4.79 11.56 32.08 0.37 -4.42 16 21 N -0.26 -3.63 3.42 -7.99 -0.03 -3.66 16 22 C 0.13 1.39 6.10 -83.60 -0.51 0.88 16 23 C -0.11 -0.90 8.29 -39.40 -0.33 -1.23 16 24 C -0.10 -0.58 10.04 -39.61 -0.40 -0.98 16 25 C -0.11 -0.61 10.04 -39.55 -0.40 -1.01 16 26 C -0.10 -0.71 10.04 -39.61 -0.40 -1.10 16 27 C -0.09 -0.91 9.81 -39.40 -0.39 -1.30 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.09 0.55 4.89 -51.93 -0.25 0.30 16 33 H 0.40 8.34 8.24 -40.82 -0.34 8.01 16 34 H 0.05 1.18 3.27 -51.93 -0.17 1.01 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.14 0.89 6.44 -52.49 -0.34 0.55 16 39 H 0.14 0.42 8.06 -52.49 -0.42 -0.01 16 40 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 41 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 42 H 0.14 1.42 8.06 -52.48 -0.42 0.99 16 LS Contribution 352.95 15.07 5.32 5.32 Total: -1.00 -35.32 352.95 -8.15 -43.47 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.27 Total: 3.84 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -4.89 Total: 0.59 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.74 Total: -57.98 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.14 Total: 17.99 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.32 -8.15 -43.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265547551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.967 kcal (2) G-P(sol) polarization free energy of solvation -35.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds