Wall clock time and date at job start Tue Mar 31 2020 10:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47361 * 2 1 4 4 N 1.30866 * 126.20485 * 275.36411 * 3 2 1 5 5 C 1.34574 * 107.28443 * 179.97438 * 4 3 2 6 6 C 1.47840 * 126.01873 * 180.02562 * 5 4 3 7 7 O 1.21558 * 120.00329 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99465 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99803 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.47166 * 324.99990 * 9 8 6 11 11 C 1.53003 * 109.47074 * 84.99922 * 9 8 6 12 12 C 1.50700 * 109.47412 * 204.99796 * 9 8 6 13 13 H 1.07994 * 119.99749 * 359.97438 * 12 9 8 14 14 C 1.37879 * 120.00039 * 180.02562 * 12 9 8 15 15 N 1.31513 * 119.99794 * 180.02562 * 14 12 9 16 16 Si 1.86802 * 119.99847 * 359.97438 * 14 12 9 17 17 H 1.48503 * 109.46763 * 90.00525 * 16 14 12 18 18 H 1.48501 * 109.46745 * 210.00100 * 16 14 12 19 19 H 1.48495 * 109.47551 * 330.00448 * 16 14 12 20 20 N 1.31555 * 107.95580 * 359.76200 * 5 4 3 21 21 N 1.28853 * 108.70787 * 0.39435 * 20 5 4 22 22 C 1.40142 * 125.77305 * 179.87910 * 21 20 5 23 23 C 1.38856 * 120.06444 * 224.10303 * 22 21 20 24 24 C 1.38117 * 119.93121 * 179.97438 * 23 22 21 25 25 C 1.38286 * 120.06657 * 359.97438 * 24 23 22 26 26 C 1.38284 * 120.13453 * 0.02562 * 25 24 23 27 27 C 1.38107 * 120.07016 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47170 * 64.96942 * 1 2 3 29 29 H 1.08993 * 109.47338 * 184.96734 * 1 2 3 30 30 H 1.08997 * 109.46904 * 304.97523 * 1 2 3 31 31 H 1.09003 * 109.46760 * 240.00258 * 2 1 3 32 32 H 1.08994 * 109.47103 * 120.00467 * 2 1 3 33 33 H 0.97000 * 120.00750 * 359.97438 * 8 6 5 34 34 H 1.08996 * 109.47563 * 180.02562 * 11 9 8 35 35 H 1.09002 * 109.46916 * 300.00135 * 11 9 8 36 36 H 1.08997 * 109.47475 * 59.99945 * 11 9 8 37 37 H 0.96997 * 119.99789 * 180.02562 * 15 14 12 38 38 H 1.07993 * 120.03496 * 359.97438 * 23 22 21 39 39 H 1.07999 * 119.96707 * 180.02562 * 24 23 22 40 40 H 1.07994 * 119.93167 * 179.72201 * 25 24 23 41 41 H 1.08006 * 119.96018 * 179.97438 * 26 25 24 42 42 H 1.08003 * 120.03766 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.1970 2.1825 -1.0513 5 6 2.6594 3.3693 -0.6168 6 6 2.9872 4.5369 -1.4623 7 8 2.8451 4.4735 -2.6679 8 7 3.4447 5.6713 -0.8964 9 6 3.7702 6.8282 -1.7342 10 1 4.1822 6.4851 -2.6833 11 6 2.5014 7.6429 -1.9938 12 6 4.7849 7.6902 -1.0283 13 1 5.1505 7.4050 -0.0529 14 6 5.2458 8.8434 -1.6272 15 7 6.1317 9.5953 -1.0113 16 14 4.6128 9.3370 -3.3140 17 1 3.4097 10.1938 -3.1599 18 1 5.6681 10.0909 -4.0374 19 1 4.2576 8.1189 -4.0854 20 7 2.7627 3.3092 0.6933 21 7 2.3934 2.1381 1.0837 22 6 2.3655 1.6879 2.4106 23 6 2.8459 0.4240 2.7266 24 6 2.8176 -0.0167 4.0352 25 6 2.3120 0.7996 5.0304 26 6 1.8329 2.0588 4.7188 27 6 1.8585 2.5052 3.4121 28 1 -0.3633 0.4348 -0.9311 29 1 -0.3633 -1.0237 0.0890 30 1 -0.3633 0.5891 0.8421 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.5585 5.7218 0.0656 34 1 2.7434 8.5035 -2.6175 35 1 1.7674 7.0195 -2.5045 36 1 2.0893 7.9860 -1.0449 37 1 6.4557 10.4068 -1.4325 38 1 3.2412 -0.2137 1.9499 39 1 3.1914 -0.9995 4.2817 40 1 2.2868 0.4511 6.0522 41 1 1.4383 2.6939 5.4982 42 1 1.4846 3.4889 3.1694 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265547551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:08 Heat of formation + Delta-G solvation = 66.406674 kcal Electronic energy + Delta-G solvation = -25370.240935 eV Core-core repulsion = 21737.690622 eV Total energy + Delta-G solvation = -3632.550313 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.88521 -40.77113 -40.14378 -37.01366 -35.68976 -35.62272 -34.48865 -32.29581 -32.09278 -31.66014 -30.29053 -27.30027 -26.31814 -25.74524 -23.83006 -23.53593 -22.69465 -21.98103 -21.30741 -19.58611 -19.15122 -18.11375 -17.99173 -17.39946 -17.34040 -16.35659 -16.13679 -15.92539 -15.57213 -15.40452 -15.22604 -14.97205 -14.89685 -14.48124 -14.18201 -14.13447 -13.80481 -13.60562 -13.44691 -13.30196 -12.82601 -12.73684 -12.60049 -12.35742 -12.18198 -12.02597 -11.77608 -11.73818 -11.63815 -11.35888 -11.29694 -10.90459 -10.87247 -10.11564 -10.07817 -9.72174 -8.40601 -6.48139 -0.38065 0.26075 0.38607 0.93913 1.04997 1.27310 1.35467 1.45810 1.86421 2.14947 2.25078 2.58676 2.94680 3.04319 3.11356 3.50730 3.74931 3.80748 4.13210 4.18772 4.21523 4.32193 4.35093 4.36894 4.41340 4.46664 4.52785 4.60986 4.77870 4.88347 4.90805 4.94077 4.94763 5.04319 5.21916 5.24924 5.28913 5.31308 5.32321 5.44125 5.45503 5.54193 5.88436 6.05015 6.46169 6.56529 6.84116 7.03208 7.20840 8.74735 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018186 B = 0.003256 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.266152 B = 8596.232890 C = 9704.492043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.045 4.045 3 C 0.226 3.774 4 N -0.489 5.489 5 C 0.135 3.865 6 C 0.604 3.396 7 O -0.560 6.560 8 N -0.678 5.678 9 C 0.243 3.757 10 H 0.031 0.969 11 C -0.156 4.156 12 C -0.538 4.538 13 H 0.054 0.946 14 C 0.032 3.968 15 N -0.931 5.931 16 Si 0.939 3.061 17 H -0.255 1.255 18 H -0.288 1.288 19 H -0.261 1.261 20 N -0.281 5.281 21 N -0.246 5.246 22 C 0.085 3.915 23 C -0.114 4.114 24 C -0.093 4.093 25 C -0.096 4.096 26 C -0.104 4.104 27 C -0.114 4.114 28 H 0.047 0.953 29 H 0.105 0.895 30 H 0.047 0.953 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.409 0.591 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.272 0.728 38 H 0.150 0.850 39 H 0.173 0.827 40 H 0.167 0.833 41 H 0.155 0.845 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.156 -25.297 15.171 31.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 C -0.048 4.048 4 N -0.213 5.213 5 C -0.144 4.144 6 C 0.386 3.614 7 O -0.437 6.437 8 N -0.327 5.327 9 C 0.139 3.861 10 H 0.049 0.951 11 C -0.214 4.214 12 C -0.576 4.576 13 H 0.072 0.928 14 C -0.168 4.168 15 N -0.569 5.569 16 Si 0.766 3.234 17 H -0.180 1.180 18 H -0.215 1.215 19 H -0.186 1.186 20 N -0.120 5.120 21 N -0.036 5.036 22 C -0.003 4.003 23 C -0.133 4.133 24 C -0.111 4.111 25 C -0.114 4.114 26 C -0.122 4.122 27 C -0.134 4.134 28 H 0.066 0.934 29 H 0.124 0.876 30 H 0.067 0.933 31 H 0.133 0.867 32 H 0.140 0.860 33 H 0.245 0.755 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.167 0.833 39 H 0.191 0.809 40 H 0.184 0.816 41 H 0.173 0.827 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.964 -24.639 14.258 30.879 hybrid contribution 0.188 1.082 -0.515 1.213 sum -11.776 -23.557 13.743 29.706 Atomic orbital electron populations 1.21718 0.92149 1.04422 1.01738 1.20663 0.97936 0.82711 1.07100 1.26015 0.98630 0.99564 0.80556 1.71220 1.19034 1.01765 1.29303 1.23583 1.06912 0.95780 0.88147 1.16613 0.77868 0.81073 0.85860 1.90735 1.55111 1.83121 1.14706 1.45858 1.63083 1.11908 1.11859 1.18955 0.93174 0.82731 0.91239 0.95118 1.22361 0.98202 0.99325 1.01543 1.21152 1.23878 1.07427 1.05186 0.92775 1.25548 0.94470 0.95652 1.01110 1.69968 1.31305 1.15357 1.40275 0.85997 0.78027 0.79259 0.80158 1.18049 1.21520 1.18551 1.74334 1.19432 1.04698 1.13584 1.44597 1.43200 1.07677 1.08097 1.18008 1.06583 0.97027 0.78704 1.21364 0.99123 0.93232 0.99627 1.21512 0.97695 1.01717 0.90197 1.21843 0.95051 0.92899 1.01614 1.21429 0.98775 0.97446 0.94588 1.21204 0.99177 0.99477 0.93514 0.93357 0.87630 0.93347 0.86668 0.85986 0.75541 0.93222 0.93434 0.91493 0.91822 0.83283 0.80949 0.81573 0.82702 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.90 71.98 0.71 -1.20 16 2 C -0.04 -0.69 6.17 29.85 0.18 -0.50 16 3 C 0.23 6.24 7.04 138.07 0.97 7.21 16 4 N -0.49 -18.42 11.41 -180.72 -2.06 -20.48 16 5 C 0.13 5.57 7.96 137.10 1.09 6.66 16 6 C 0.60 28.45 7.79 86.79 0.68 29.12 16 7 O -0.56 -29.68 16.75 -3.90 -0.07 -29.74 16 8 N -0.68 -31.66 5.07 -448.97 -2.27 -33.93 16 9 C 0.24 12.51 2.15 44.25 0.10 12.61 16 10 H 0.03 1.73 6.63 -2.39 -0.02 1.71 16 11 C -0.16 -7.26 8.96 71.98 0.65 -6.61 16 12 C -0.54 -31.02 9.31 25.60 0.24 -30.78 16 13 H 0.05 3.34 7.98 -2.91 -0.02 3.32 16 14 C 0.03 1.89 5.45 84.66 0.46 2.35 16 15 N -0.93 -57.01 13.96 21.45 0.30 -56.71 16 16 Si 0.94 45.69 24.37 68.60 1.67 47.36 16 17 H -0.26 -11.54 6.87 99.48 0.68 -10.86 16 18 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 19 H -0.26 -12.67 6.53 99.48 0.65 -12.02 16 20 N -0.28 -10.16 11.56 -52.42 -0.61 -10.77 16 21 N -0.25 -6.99 3.42 -179.21 -0.61 -7.61 16 22 C 0.09 1.76 6.10 38.11 0.23 1.99 16 23 C -0.11 -1.44 8.29 22.39 0.19 -1.25 16 24 C -0.09 -0.63 10.04 22.25 0.22 -0.40 16 25 C -0.10 -0.64 10.04 22.29 0.22 -0.42 16 26 C -0.10 -1.18 10.04 22.25 0.22 -0.96 16 27 C -0.11 -2.16 9.81 22.38 0.22 -1.94 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.12 1.06 4.89 -2.39 -0.01 1.05 16 33 H 0.41 17.87 8.24 -92.71 -0.76 17.11 16 34 H 0.05 2.29 3.27 -2.39 -0.01 2.28 16 35 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 38 H 0.15 1.42 6.44 -2.91 -0.02 1.40 16 39 H 0.17 -0.03 8.06 -2.91 -0.02 -0.05 16 40 H 0.17 0.04 8.06 -2.91 -0.02 0.01 16 41 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 42 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -80.85 352.95 2.95 -77.90 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.22 Total: 18.10 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 6.38 Total: 15.88 kcal Atomic # 7 Polarization: -124.23 SS G_CDS: -5.26 Total: -129.49 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.07 Total: -29.74 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.67 Total: 47.36 kcal Total: -80.85 2.95 -77.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265547551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.302 kcal (2) G-P(sol) polarization free energy of solvation -80.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds