Wall clock time and date at job start Tue Mar 31 2020 10:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46978 * 2 1 4 4 N 1.30834 * 125.96142 * 264.99735 * 3 2 1 5 5 C 1.33236 * 109.83033 * 179.97438 * 4 3 2 6 6 C 1.50701 * 125.52747 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.46924 * 14.99968 * 6 5 4 8 8 C 1.53006 * 109.47271 * 255.00334 * 6 5 4 9 9 N 1.46498 * 109.47533 * 134.99929 * 6 5 4 10 10 C 1.34772 * 120.00073 * 205.00277 * 9 6 5 11 11 O 1.21581 * 120.00451 * 0.02562 * 10 9 6 12 12 C 1.47653 * 119.99901 * 179.97438 * 10 9 6 13 13 C 1.40007 * 119.89209 * 359.72659 * 12 10 9 14 14 C 1.36324 * 120.10662 * 179.71719 * 13 12 10 15 15 C 1.40888 * 119.88343 * 0.57426 * 14 13 12 16 16 C 1.41120 * 120.09651 * 179.67476 * 15 14 13 17 17 H 1.08002 * 119.99580 * 155.08958 * 16 15 14 18 18 C 1.40219 * 120.00290 * 335.08771 * 16 15 14 19 19 N 1.30653 * 119.99970 * 342.20543 * 18 16 15 20 20 Si 1.86795 * 120.00248 * 162.20816 * 18 16 15 21 21 H 1.48492 * 109.47448 * 94.65978 * 20 18 16 22 22 H 1.48505 * 109.47292 * 214.66229 * 20 18 16 23 23 H 1.48501 * 109.46785 * 334.65867 * 20 18 16 24 24 C 1.40888 * 119.79800 * 359.70011 * 15 14 13 25 25 C 1.36317 * 119.89173 * 359.97438 * 24 15 14 26 26 N 1.30713 * 108.94808 * 359.97438 * 5 4 3 27 27 N 1.34429 * 125.96598 * 84.97190 * 3 2 1 28 28 H 0.97002 * 126.81751 * 0.02562 * 27 3 2 29 29 H 1.09002 * 109.46819 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47346 * 300.00429 * 1 2 3 31 31 H 1.08999 * 109.46676 * 60.00190 * 1 2 3 32 32 H 1.08995 * 109.47346 * 239.99571 * 2 1 3 33 33 H 1.08998 * 109.46784 * 119.99265 * 2 1 3 34 34 H 1.08996 * 109.47148 * 179.97438 * 8 6 5 35 35 H 1.08997 * 109.46446 * 299.99424 * 8 6 5 36 36 H 1.08997 * 109.47231 * 59.99496 * 8 6 5 37 37 H 0.97002 * 119.99691 * 25.00217 * 9 6 5 38 38 H 1.08004 * 119.95228 * 359.97438 * 13 12 10 39 39 H 1.07996 * 120.05707 * 180.25541 * 14 13 12 40 40 H 0.96997 * 119.99840 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.04909 * 179.97438 * 24 15 14 42 42 H 1.07998 * 119.94588 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3755 2.1144 -1.0550 5 6 2.7711 3.3321 -0.6862 6 6 3.2413 4.4195 -1.6176 7 1 2.9637 4.1666 -2.6409 8 6 4.7624 4.5524 -1.5199 9 7 2.6150 5.6893 -1.2414 10 6 2.4596 6.6625 -2.1607 11 8 2.8387 6.4865 -3.3024 12 6 1.8278 7.9421 -1.7817 13 6 1.3859 8.1399 -0.4680 14 6 0.8073 9.3217 -0.1118 15 6 0.6434 10.3403 -1.0712 16 6 0.0387 11.5629 -0.7091 17 1 0.2572 12.4601 -1.2693 18 6 -0.8456 11.6129 0.3779 19 7 -1.3814 10.5126 0.8353 20 14 -1.2577 13.2526 1.1721 21 1 -2.5073 13.7907 0.5771 22 1 -1.4471 13.0616 2.6326 23 1 -0.1462 14.2092 0.9381 24 6 1.0845 10.1344 -2.3933 25 6 1.6680 8.9517 -2.7384 26 7 2.6843 3.4309 0.6143 27 7 2.2056 2.1970 1.0838 28 1 2.0336 1.9532 2.0069 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 5.1025 5.3386 -2.1939 35 1 5.0399 4.8054 -0.4967 36 1 5.2284 3.6077 -1.7998 37 1 2.3122 5.8297 -0.3306 38 1 1.5073 7.3565 0.2655 39 1 0.4704 9.4749 0.9028 40 1 -1.9934 10.5472 1.5870 41 1 0.9605 10.9123 -3.1322 42 1 2.0061 8.7928 -3.7517 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270744477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:20 Heat of formation + Delta-G solvation = 50.033527 kcal Electronic energy + Delta-G solvation = -24787.758181 eV Core-core repulsion = 21154.497875 eV Total energy + Delta-G solvation = -3633.260306 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.38089 -39.15733 -37.20575 -35.54138 -34.16193 -33.84763 -32.61549 -31.07917 -29.98264 -29.43607 -29.24564 -25.92156 -24.75763 -24.29434 -22.09084 -21.05243 -20.94011 -20.14367 -19.54012 -18.09769 -17.50156 -16.84520 -15.90911 -15.82737 -15.39523 -14.91847 -14.57238 -14.30678 -14.11272 -13.89046 -13.59215 -13.16546 -13.10863 -12.76704 -12.54822 -12.49580 -12.11871 -12.00341 -11.95102 -11.82101 -11.52183 -11.36524 -11.29533 -11.22618 -10.95103 -10.61986 -10.26977 -10.19451 -10.03695 -9.71272 -9.53604 -9.32721 -8.94734 -8.66233 -7.69058 -7.51829 -7.01776 -4.58161 1.38267 2.25159 2.40372 2.64322 2.91498 2.95437 3.01896 3.06676 3.51837 3.75082 3.86845 3.95151 4.33015 4.44989 4.59224 4.73371 4.87958 5.07141 5.33704 5.34967 5.40374 5.53469 5.60786 5.70721 5.76080 5.90829 6.03346 6.09270 6.14739 6.20558 6.34953 6.37029 6.79353 6.81740 6.84894 6.92433 7.07571 7.15896 7.46240 7.67917 7.81800 7.88592 7.91795 8.09399 8.25813 8.42274 8.65274 8.77722 9.08285 9.90338 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.016278 B = 0.002845 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.733461 B = 9839.696255 C =10963.641826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.045 4.045 3 C 0.283 3.717 4 N -0.529 5.529 5 C 0.230 3.770 6 C 0.241 3.759 7 H 0.112 0.888 8 C -0.154 4.154 9 N -0.734 5.734 10 C 0.576 3.424 11 O -0.572 6.572 12 C -0.282 4.282 13 C -0.061 4.061 14 C -0.178 4.178 15 C 0.129 3.871 16 C -0.443 4.443 17 H 0.085 0.915 18 C 0.074 3.926 19 N -0.772 5.772 20 Si 0.912 3.088 21 H -0.267 1.267 22 H -0.273 1.273 23 H -0.257 1.257 24 C -0.239 4.239 25 C -0.021 4.021 26 N -0.303 5.303 27 N -0.481 5.481 28 H 0.440 0.560 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.402 0.598 38 H 0.088 0.912 39 H 0.119 0.881 40 H 0.286 0.714 41 H 0.098 0.902 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.404 -17.081 5.045 18.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.085 4.085 3 C 0.005 3.995 4 N -0.257 5.257 5 C -0.054 4.054 6 C 0.132 3.868 7 H 0.130 0.870 8 C -0.214 4.214 9 N -0.388 5.388 10 C 0.371 3.629 11 O -0.453 6.453 12 C -0.287 4.287 13 C -0.081 4.081 14 C -0.197 4.197 15 C 0.126 3.874 16 C -0.471 4.471 17 H 0.103 0.897 18 C -0.147 4.147 19 N -0.395 5.395 20 Si 0.736 3.264 21 H -0.193 1.193 22 H -0.198 1.198 23 H -0.181 1.181 24 C -0.258 4.258 25 C -0.040 4.040 26 N -0.132 5.132 27 N -0.199 5.199 28 H 0.285 0.715 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.238 0.762 38 H 0.106 0.894 39 H 0.137 0.863 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.693 -16.742 4.426 17.706 hybrid contribution -0.710 0.308 1.698 1.866 sum 2.983 -16.433 6.125 17.789 Atomic orbital electron populations 1.21771 0.93056 1.02958 1.03095 1.20193 0.97003 0.86214 1.05112 1.24416 0.95922 0.96245 0.82945 1.70345 1.21401 1.04631 1.29372 1.24368 0.97196 0.93629 0.90188 1.18912 0.92804 0.79106 0.95933 0.87046 1.22149 0.93606 1.02691 1.02946 1.45950 1.64241 1.14117 1.14503 1.18576 0.76964 0.83538 0.83794 1.90634 1.52876 1.81718 1.20116 1.18861 1.18415 0.95279 0.96131 1.20489 0.97043 0.96694 0.93827 1.20965 1.04511 0.94260 1.00011 1.17790 0.86972 0.92357 0.90286 1.19841 1.20700 0.95906 1.10605 0.89709 1.26100 0.94298 0.98591 0.95690 1.69754 1.19935 1.29504 1.20347 0.86219 0.79829 0.81692 0.78672 1.19253 1.19778 1.18077 1.20720 1.11063 0.97875 0.96193 1.20360 0.94272 0.92317 0.97040 1.77994 1.22086 1.00703 1.12400 1.47971 1.51490 1.10044 1.10391 0.71502 0.90931 0.92485 0.91447 0.87758 0.89374 0.90504 0.92108 0.91797 0.76221 0.89385 0.86273 0.90299 0.88343 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.16 0.37 -0.49 16 2 C -0.05 -0.27 6.56 -27.88 -0.18 -0.45 16 3 C 0.28 2.99 7.49 -155.69 -1.17 1.83 16 4 N -0.53 -7.55 11.19 -8.16 -0.09 -7.64 16 5 C 0.23 3.52 6.95 -156.86 -1.09 2.44 16 6 C 0.24 3.93 3.12 -69.08 -0.22 3.72 16 7 H 0.11 1.96 7.58 -51.93 -0.39 1.57 16 8 C -0.15 -2.21 9.47 37.16 0.35 -1.86 16 9 N -0.73 -13.51 5.02 -55.94 -0.28 -13.79 16 10 C 0.58 12.64 7.73 -12.42 -0.10 12.54 16 11 O -0.57 -13.65 15.98 5.29 0.08 -13.56 16 12 C -0.28 -6.63 5.89 -104.73 -0.62 -7.24 16 13 C -0.06 -1.41 9.47 -39.61 -0.38 -1.79 16 14 C -0.18 -4.47 8.63 -39.27 -0.34 -4.80 16 15 C 0.13 3.34 5.57 -106.80 -0.60 2.74 16 16 C -0.44 -11.14 9.04 -37.75 -0.34 -11.48 16 17 H 0.08 2.03 7.91 -52.49 -0.42 1.62 16 18 C 0.07 1.75 5.13 -17.31 -0.09 1.66 16 19 N -0.77 -18.76 10.97 55.56 0.61 -18.15 16 20 Si 0.91 17.44 29.60 -169.99 -5.03 12.41 16 21 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 22 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 23 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 24 C -0.24 -5.86 9.73 -39.27 -0.38 -6.25 16 25 C -0.02 -0.50 9.52 -39.61 -0.38 -0.87 16 26 N -0.30 -4.35 12.46 32.42 0.40 -3.95 16 27 N -0.48 -4.99 7.45 32.62 0.24 -4.75 16 28 H 0.44 2.86 8.96 -182.34 -1.63 1.22 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.40 7.14 6.32 -40.82 -0.26 6.88 16 38 H 0.09 1.79 6.37 -52.48 -0.33 1.46 16 39 H 0.12 3.02 6.17 -52.49 -0.32 2.70 16 40 H 0.29 6.24 8.29 -40.82 -0.34 5.90 16 41 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 42 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 LS Contribution 360.62 15.07 5.43 5.43 Total: -1.00 -31.14 360.62 -10.47 -41.61 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -6.70 Total: 12.70 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -5.15 Total: -10.30 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.88 Total: -48.29 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.08 Total: -13.56 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.14 -10.47 -41.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270744477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.643 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds