Wall clock time and date at job start Tue Mar 31 2020 10:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46978 * 2 1 4 4 N 1.30834 * 125.96142 * 264.99735 * 3 2 1 5 5 C 1.33236 * 109.83033 * 179.97438 * 4 3 2 6 6 C 1.50701 * 125.52747 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.46924 * 14.99968 * 6 5 4 8 8 C 1.53006 * 109.47271 * 255.00334 * 6 5 4 9 9 N 1.46498 * 109.47533 * 134.99929 * 6 5 4 10 10 C 1.34772 * 120.00073 * 205.00277 * 9 6 5 11 11 O 1.21581 * 120.00451 * 0.02562 * 10 9 6 12 12 C 1.47653 * 119.99901 * 179.97438 * 10 9 6 13 13 C 1.40007 * 119.89209 * 359.72659 * 12 10 9 14 14 C 1.36324 * 120.10662 * 179.71719 * 13 12 10 15 15 C 1.40888 * 119.88343 * 0.57426 * 14 13 12 16 16 C 1.41120 * 120.09651 * 179.67476 * 15 14 13 17 17 H 1.08002 * 119.99580 * 155.08958 * 16 15 14 18 18 C 1.40219 * 120.00290 * 335.08771 * 16 15 14 19 19 N 1.30653 * 119.99970 * 342.20543 * 18 16 15 20 20 Si 1.86795 * 120.00248 * 162.20816 * 18 16 15 21 21 H 1.48492 * 109.47448 * 94.65978 * 20 18 16 22 22 H 1.48505 * 109.47292 * 214.66229 * 20 18 16 23 23 H 1.48501 * 109.46785 * 334.65867 * 20 18 16 24 24 C 1.40888 * 119.79800 * 359.70011 * 15 14 13 25 25 C 1.36317 * 119.89173 * 359.97438 * 24 15 14 26 26 N 1.30713 * 108.94808 * 359.97438 * 5 4 3 27 27 N 1.34429 * 125.96598 * 84.97190 * 3 2 1 28 28 H 0.97002 * 126.81751 * 0.02562 * 27 3 2 29 29 H 1.09002 * 109.46819 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47346 * 300.00429 * 1 2 3 31 31 H 1.08999 * 109.46676 * 60.00190 * 1 2 3 32 32 H 1.08995 * 109.47346 * 239.99571 * 2 1 3 33 33 H 1.08998 * 109.46784 * 119.99265 * 2 1 3 34 34 H 1.08996 * 109.47148 * 179.97438 * 8 6 5 35 35 H 1.08997 * 109.46446 * 299.99424 * 8 6 5 36 36 H 1.08997 * 109.47231 * 59.99496 * 8 6 5 37 37 H 0.97002 * 119.99691 * 25.00217 * 9 6 5 38 38 H 1.08004 * 119.95228 * 359.97438 * 13 12 10 39 39 H 1.07996 * 120.05707 * 180.25541 * 14 13 12 40 40 H 0.96997 * 119.99840 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.04909 * 179.97438 * 24 15 14 42 42 H 1.07998 * 119.94588 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3755 2.1144 -1.0550 5 6 2.7711 3.3321 -0.6862 6 6 3.2413 4.4195 -1.6176 7 1 2.9637 4.1666 -2.6409 8 6 4.7624 4.5524 -1.5199 9 7 2.6150 5.6893 -1.2414 10 6 2.4596 6.6625 -2.1607 11 8 2.8387 6.4865 -3.3024 12 6 1.8278 7.9421 -1.7817 13 6 1.3859 8.1399 -0.4680 14 6 0.8073 9.3217 -0.1118 15 6 0.6434 10.3403 -1.0712 16 6 0.0387 11.5629 -0.7091 17 1 0.2572 12.4601 -1.2693 18 6 -0.8456 11.6129 0.3779 19 7 -1.3814 10.5126 0.8353 20 14 -1.2577 13.2526 1.1721 21 1 -2.5073 13.7907 0.5771 22 1 -1.4471 13.0616 2.6326 23 1 -0.1462 14.2092 0.9381 24 6 1.0845 10.1344 -2.3933 25 6 1.6680 8.9517 -2.7384 26 7 2.6843 3.4309 0.6143 27 7 2.2056 2.1970 1.0838 28 1 2.0336 1.9532 2.0069 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 5.1025 5.3386 -2.1939 35 1 5.0399 4.8054 -0.4967 36 1 5.2284 3.6077 -1.7998 37 1 2.3122 5.8297 -0.3306 38 1 1.5073 7.3565 0.2655 39 1 0.4704 9.4749 0.9028 40 1 -1.9934 10.5472 1.5870 41 1 0.9605 10.9123 -3.1322 42 1 2.0061 8.7928 -3.7517 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270744477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:20 Heat of formation + Delta-G solvation = 31.167227 kcal Electronic energy + Delta-G solvation = -24788.576285 eV Core-core repulsion = 21154.497875 eV Total energy + Delta-G solvation = -3634.078411 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.35309 -40.86921 -39.01479 -36.89379 -35.68169 -34.95501 -33.70434 -32.58182 -31.37779 -31.22173 -30.52417 -27.71878 -25.65592 -25.29420 -23.73860 -22.83828 -21.95121 -21.43069 -21.13448 -19.37563 -19.13844 -18.35292 -17.37960 -17.03193 -16.83786 -15.98679 -15.78416 -15.73936 -15.55934 -15.10488 -15.07829 -14.77355 -14.48714 -14.17629 -13.92269 -13.70857 -13.48757 -13.26553 -13.23719 -13.08533 -12.84262 -12.67899 -12.53034 -12.47675 -12.36616 -12.00360 -11.79129 -11.38915 -11.26319 -11.21473 -11.12671 -10.81457 -10.61648 -10.22369 -9.59034 -9.42763 -8.80534 -6.49245 0.41048 0.45014 1.14214 1.37851 1.41676 1.54655 1.57235 1.59822 2.09643 2.17361 2.24814 2.76009 2.84854 3.46054 3.67843 3.70153 4.04521 4.12402 4.26551 4.27540 4.28823 4.35527 4.45002 4.58335 4.68067 4.81991 4.91604 4.94460 5.00931 5.02067 5.04848 5.14352 5.14774 5.20267 5.28324 5.32765 5.44227 5.57957 5.80315 5.92491 5.98610 6.12172 6.21136 6.52598 6.60168 6.75908 6.87438 6.95161 7.36240 8.14902 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.016278 B = 0.002845 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.733461 B = 9839.696255 C =10963.641826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.042 4.042 3 C 0.293 3.707 4 N -0.563 5.563 5 C 0.216 3.784 6 C 0.240 3.760 7 H 0.095 0.905 8 C -0.145 4.145 9 N -0.720 5.720 10 C 0.578 3.422 11 O -0.595 6.595 12 C -0.293 4.293 13 C -0.054 4.054 14 C -0.197 4.197 15 C 0.103 3.897 16 C -0.472 4.472 17 H 0.088 0.912 18 C 0.037 3.963 19 N -0.799 5.799 20 Si 0.988 3.012 21 H -0.261 1.261 22 H -0.262 1.262 23 H -0.256 1.256 24 C -0.252 4.252 25 C -0.029 4.029 26 N -0.324 5.324 27 N -0.467 5.467 28 H 0.457 0.543 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.109 0.891 33 H 0.126 0.874 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.406 0.594 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.297 0.703 41 H 0.107 0.893 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.126 -18.428 6.882 19.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.081 4.081 3 C 0.015 3.985 4 N -0.292 5.292 5 C -0.068 4.068 6 C 0.132 3.868 7 H 0.113 0.887 8 C -0.204 4.204 9 N -0.373 5.373 10 C 0.372 3.628 11 O -0.478 6.478 12 C -0.297 4.297 13 C -0.073 4.073 14 C -0.217 4.217 15 C 0.099 3.901 16 C -0.499 4.499 17 H 0.106 0.894 18 C -0.182 4.182 19 N -0.423 5.423 20 Si 0.808 3.192 21 H -0.185 1.185 22 H -0.187 1.187 23 H -0.180 1.180 24 C -0.271 4.271 25 C -0.048 4.048 26 N -0.154 5.154 27 N -0.187 5.187 28 H 0.306 0.694 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.128 0.872 33 H 0.144 0.856 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.242 0.758 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.126 0.874 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.416 -18.139 6.302 19.504 hybrid contribution -0.656 0.565 1.150 1.440 sum 2.760 -17.573 7.452 19.287 Atomic orbital electron populations 1.21767 0.92768 1.04210 1.01897 1.20473 0.96968 0.83444 1.07238 1.25234 0.93904 0.97401 0.81921 1.70313 1.22888 1.04707 1.31326 1.24040 0.98451 0.93912 0.90363 1.18932 0.93894 0.78421 0.95527 0.88728 1.22051 0.92119 1.03286 1.02919 1.45800 1.63318 1.14247 1.13934 1.18359 0.76827 0.83724 0.83877 1.90616 1.53951 1.82177 1.21104 1.19114 1.18364 0.96015 0.96255 1.20667 0.95796 0.96662 0.94197 1.20982 1.05855 0.95139 0.99686 1.18139 0.87773 0.93221 0.90937 1.20132 1.21712 0.95860 1.12158 0.89433 1.26966 0.93445 1.02386 0.95423 1.69777 1.20100 1.31627 1.20749 0.85090 0.79561 0.76649 0.77910 1.18508 1.18650 1.17974 1.20879 1.11525 0.98473 0.96248 1.20514 0.94285 0.92458 0.97545 1.77877 1.22764 1.02790 1.11959 1.47890 1.50556 1.08801 1.11459 0.69362 0.88477 0.92340 0.93977 0.87222 0.85635 0.91819 0.91586 0.89834 0.75759 0.86896 0.86986 0.89215 0.87445 0.87478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.89 71.98 0.71 -0.61 16 2 C -0.04 -0.37 6.56 29.85 0.20 -0.17 16 3 C 0.29 5.61 7.49 138.22 1.04 6.65 16 4 N -0.56 -15.58 11.19 -179.73 -2.01 -17.59 16 5 C 0.22 6.50 6.95 138.63 0.96 7.46 16 6 C 0.24 7.84 3.12 44.25 0.14 7.98 16 7 H 0.09 3.42 7.58 -2.39 -0.02 3.40 16 8 C -0.14 -4.07 9.47 71.98 0.68 -3.39 16 9 N -0.72 -26.55 5.02 -449.15 -2.25 -28.80 16 10 C 0.58 25.64 7.73 86.73 0.67 26.31 16 11 O -0.59 -28.87 15.98 -3.97 -0.06 -28.93 16 12 C -0.29 -13.94 5.89 -19.93 -0.12 -14.06 16 13 C -0.05 -2.52 9.47 22.25 0.21 -2.31 16 14 C -0.20 -10.08 8.63 22.47 0.19 -9.88 16 15 C 0.10 5.42 5.57 -21.27 -0.12 5.31 16 16 C -0.47 -24.06 9.04 23.46 0.21 -23.85 16 17 H 0.09 4.26 7.91 -2.91 -0.02 4.23 16 18 C 0.04 1.73 5.13 85.35 0.44 2.16 16 19 N -0.80 -38.84 10.97 21.87 0.24 -38.60 16 20 Si 0.99 35.09 29.60 68.60 2.03 37.12 16 21 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 22 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 23 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 24 C -0.25 -12.68 9.73 22.47 0.22 -12.46 16 25 C -0.03 -1.41 9.52 22.25 0.21 -1.20 16 26 N -0.32 -8.91 12.46 -51.34 -0.64 -9.55 16 27 N -0.47 -8.71 7.45 -50.71 -0.38 -9.09 16 28 H 0.46 4.72 8.96 -213.10 -1.91 2.81 16 29 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.41 14.27 6.32 -92.71 -0.59 13.69 16 38 H 0.11 4.55 6.37 -2.91 -0.02 4.53 16 39 H 0.11 5.80 6.17 -2.91 -0.02 5.78 16 40 H 0.30 12.80 8.29 -92.71 -0.77 12.03 16 41 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 42 H 0.11 5.04 7.63 -2.91 -0.02 5.02 16 Total: -1.00 -68.50 360.62 1.15 -67.35 By element: Atomic # 1 Polarization: 41.59 SS G_CDS: -1.42 Total: 40.17 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 5.65 Total: -12.07 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -5.04 Total: -103.64 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.06 Total: -28.93 kcal Atomic # 14 Polarization: 35.09 SS G_CDS: 2.03 Total: 37.12 kcal Total: -68.50 1.15 -67.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270744477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.515 kcal (2) G-P(sol) polarization free energy of solvation -68.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds