Wall clock time and date at job start Tue Mar 31 2020 10:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47405 * 2 1 4 4 N 1.30864 * 126.20372 * 275.37664 * 3 2 1 5 5 C 1.34575 * 107.28977 * 179.97438 * 4 3 2 6 6 C 1.47827 * 126.02208 * 180.02562 * 5 4 3 7 7 O 1.21551 * 120.00585 * 0.02562 * 6 5 4 8 8 N 1.34791 * 119.99717 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99734 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46642 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.46863 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99989 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99900 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99834 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00217 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47129 * 89.99558 * 15 13 11 17 17 H 1.48501 * 109.47385 * 209.99994 * 15 13 11 18 18 H 1.48502 * 109.46879 * 330.00040 * 15 13 11 19 19 N 1.31561 * 107.94957 * 359.74274 * 5 4 3 20 20 N 1.28853 * 108.70962 * 0.42936 * 19 5 4 21 21 C 1.40150 * 125.77155 * 179.84060 * 20 19 5 22 22 C 1.38851 * 120.05939 * 224.09408 * 21 20 19 23 23 C 1.38117 * 119.92633 * 179.97438 * 22 21 20 24 24 C 1.38289 * 120.06770 * 359.97438 * 23 22 21 25 25 C 1.38283 * 120.13507 * 0.02562 * 24 23 22 26 26 C 1.38116 * 120.06830 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.47163 * 304.97507 * 1 2 3 28 28 H 1.09001 * 109.47064 * 64.97249 * 1 2 3 29 29 H 1.09002 * 109.47138 * 184.97420 * 1 2 3 30 30 H 1.09002 * 109.46854 * 239.99314 * 2 1 3 31 31 H 1.09000 * 109.46684 * 120.00333 * 2 1 3 32 32 H 0.96995 * 119.99721 * 359.97438 * 8 6 5 33 33 H 1.08998 * 109.47529 * 300.00015 * 9 8 6 34 34 H 1.09001 * 109.46956 * 60.00115 * 9 8 6 35 35 H 1.09002 * 109.47131 * 299.99520 * 10 9 8 36 36 H 1.09001 * 109.47307 * 60.00383 * 10 9 8 37 37 H 0.97002 * 119.99572 * 179.97438 * 14 13 11 38 38 H 1.07992 * 120.04231 * 359.97438 * 22 21 20 39 39 H 1.08002 * 119.96905 * 180.02562 * 23 22 21 40 40 H 1.07994 * 119.92750 * 179.72265 * 24 23 22 41 41 H 1.07996 * 119.96170 * 179.97438 * 25 24 23 42 42 H 1.08000 * 120.03102 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.1968 2.1825 -1.0513 5 6 2.6592 3.3693 -0.6170 6 6 2.9869 4.5368 -1.4624 7 8 2.8436 4.4738 -2.6678 8 7 3.4446 5.6714 -0.8966 9 6 3.7698 6.8282 -1.7345 10 6 4.2631 7.9755 -0.8505 11 6 4.5983 9.1654 -1.7124 12 1 4.4717 9.1091 -2.7835 13 6 5.0655 10.3262 -1.1335 14 7 5.3576 11.3648 -1.8857 15 14 5.2838 10.4239 0.7191 16 1 6.6560 9.9856 1.0796 17 1 5.0771 11.8240 1.1688 18 1 4.2917 9.5396 1.3816 19 7 2.7625 3.3093 0.6932 20 7 2.3937 2.1380 1.0837 21 6 2.3666 1.6876 2.4106 22 6 2.8474 0.4238 2.7260 23 6 2.8199 -0.0171 4.0346 24 6 2.3147 0.7990 5.0302 25 6 1.8353 2.0581 4.7191 26 6 1.8601 2.5047 3.4123 27 1 -0.3633 0.5891 0.8421 28 1 -0.3633 0.4348 -0.9312 29 1 -0.3633 -1.0238 0.0891 30 1 1.8933 -0.5140 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.5585 5.7218 0.0653 33 1 4.5502 6.5547 -2.4445 34 1 2.8795 7.1453 -2.2775 35 1 3.4822 8.2490 -0.1408 36 1 5.1533 7.6587 -0.3071 37 1 5.6859 12.1816 -1.4784 38 1 3.2424 -0.2138 1.9490 39 1 3.1940 -0.9999 4.2807 40 1 2.2902 0.4502 6.0520 41 1 1.4410 2.6930 5.4987 42 1 1.4858 3.4884 3.1701 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273051821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:01 Heat of formation + Delta-G solvation = 79.516000 kcal Electronic energy + Delta-G solvation = -24809.386823 eV Core-core repulsion = 21177.404973 eV Total energy + Delta-G solvation = -3631.981850 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.86998 -39.82169 -39.01036 -35.11738 -34.92627 -34.69609 -32.80216 -31.64847 -31.10258 -30.48329 -29.44358 -25.88077 -25.08516 -24.04442 -23.25765 -22.52716 -21.14927 -20.79102 -20.15739 -18.52363 -17.47399 -17.01584 -16.88773 -16.75116 -15.44329 -15.26916 -15.13465 -14.82798 -14.77881 -14.62920 -14.14676 -14.04329 -13.57878 -13.52018 -13.27486 -12.94779 -12.67098 -12.58108 -12.27898 -11.99044 -11.87534 -11.47742 -11.39190 -11.20516 -10.89368 -10.63036 -10.38399 -10.32402 -9.97187 -9.91617 -9.76055 -9.63729 -9.30632 -9.10102 -8.63508 -8.53805 -6.08791 -4.08796 0.28729 0.69119 1.38368 1.87674 1.98929 3.03644 3.12753 3.27796 3.35272 3.37229 3.52027 3.88171 4.05504 4.18883 4.28281 4.40294 4.47615 4.57773 4.71709 4.74039 4.81854 4.85978 4.91958 5.16934 5.24262 5.32122 5.36337 5.50973 5.62364 5.67340 5.75340 5.82468 5.85761 6.08201 6.09335 6.21313 6.21896 6.48928 6.57122 6.67947 7.14170 7.25142 7.66671 7.67935 7.98351 8.42800 8.48840 8.95660 9.51351 11.04189 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.014854 B = 0.003005 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.563839 B = 9316.817389 C =10931.856776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.221 3.779 4 N -0.451 5.451 5 C 0.163 3.837 6 C 0.605 3.395 7 O -0.514 6.514 8 N -0.706 5.706 9 C 0.131 3.869 10 C -0.022 4.022 11 C -0.522 4.522 12 H 0.077 0.923 13 C 0.070 3.930 14 N -0.898 5.898 15 Si 0.881 3.119 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.266 1.266 19 N -0.277 5.277 20 N -0.255 5.255 21 C 0.125 3.875 22 C -0.114 4.114 23 C -0.102 4.102 24 C -0.108 4.108 25 C -0.102 4.102 26 C -0.094 4.094 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.403 0.597 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.023 0.977 36 H 0.019 0.981 37 H 0.265 0.735 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.974 -28.545 17.090 34.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C -0.054 4.054 4 N -0.174 5.174 5 C -0.117 4.117 6 C 0.385 3.615 7 O -0.386 6.386 8 N -0.357 5.357 9 C 0.009 3.991 10 C -0.060 4.060 11 C -0.560 4.560 12 H 0.095 0.905 13 C -0.132 4.132 14 N -0.537 5.537 15 Si 0.708 3.292 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.190 1.190 19 N -0.115 5.115 20 N -0.044 5.044 21 C 0.035 3.965 22 C -0.134 4.134 23 C -0.121 4.121 24 C -0.126 4.126 25 C -0.121 4.121 26 C -0.114 4.114 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.237 0.763 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.831 -27.850 16.121 33.369 hybrid contribution 0.266 0.163 1.561 1.591 sum -8.565 -27.687 17.681 33.950 Atomic orbital electron populations 1.21733 0.92928 1.02733 1.03132 1.20329 0.97459 0.85732 1.05122 1.25142 1.00330 0.98339 0.81567 1.71312 1.17464 1.01606 1.26998 1.24116 1.04264 0.95790 0.87562 1.16308 0.78641 0.80529 0.85976 1.90821 1.52676 1.82042 1.13077 1.46135 1.64790 1.12904 1.11911 1.21641 1.00473 0.83297 0.93680 1.19810 0.96322 0.93632 0.96249 1.20907 1.44320 0.95356 0.95442 0.90483 1.24987 0.94660 0.95477 0.98111 1.69906 1.44756 1.03492 1.35516 0.86766 0.78986 0.77356 0.86091 1.20204 1.21267 1.19020 1.74403 1.19692 1.02830 1.14548 1.44325 1.44758 1.08724 1.06638 1.17541 1.03572 0.95260 0.80094 1.21115 0.99724 0.94500 0.98056 1.21067 0.99108 1.00425 0.91454 1.21392 0.97253 0.93987 0.99968 1.21160 0.98973 0.96332 0.95600 1.21167 0.97998 1.00037 0.92180 0.92653 0.91317 0.90930 0.87676 0.89107 0.76254 0.91408 0.91391 0.95840 0.96274 0.92559 0.84568 0.84489 0.84921 0.84539 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.90 37.16 0.37 -0.62 16 2 C -0.05 -0.35 6.17 -27.88 -0.17 -0.52 16 3 C 0.22 2.74 7.04 -155.26 -1.09 1.65 16 4 N -0.45 -7.46 11.41 -8.48 -0.10 -7.56 16 5 C 0.16 2.86 7.96 -156.30 -1.24 1.62 16 6 C 0.61 11.94 7.83 -12.33 -0.10 11.85 16 7 O -0.51 -11.75 17.09 5.32 0.09 -11.66 16 8 N -0.71 -13.26 5.55 -61.25 -0.34 -13.60 16 9 C 0.13 2.79 5.61 -4.04 -0.02 2.77 16 10 C -0.02 -0.53 4.16 -27.88 -0.12 -0.64 16 11 C -0.52 -14.83 9.66 -34.44 -0.33 -15.16 16 12 H 0.08 2.36 7.99 -52.49 -0.42 1.94 16 13 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 14 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 15 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 19 N -0.28 -4.26 11.56 32.08 0.37 -3.89 16 20 N -0.25 -3.19 3.42 -8.00 -0.03 -3.22 16 21 C 0.13 1.19 6.10 -83.60 -0.51 0.68 16 22 C -0.11 -0.76 8.29 -39.40 -0.33 -1.08 16 23 C -0.10 -0.47 10.04 -39.61 -0.40 -0.87 16 24 C -0.11 -0.49 10.04 -39.55 -0.40 -0.89 16 25 C -0.10 -0.60 10.04 -39.61 -0.40 -1.00 16 26 C -0.09 -0.80 9.81 -39.40 -0.39 -1.18 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.45 4.89 -51.93 -0.25 0.20 16 32 H 0.40 6.78 8.17 -40.82 -0.33 6.45 16 33 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 35 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 36 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.14 0.72 6.45 -52.49 -0.34 0.38 16 39 H 0.14 0.29 8.06 -52.49 -0.42 -0.14 16 40 H 0.13 0.29 8.06 -52.49 -0.42 -0.13 16 41 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 360.99 15.07 5.44 5.44 Total: -1.00 -35.87 360.99 -9.19 -45.05 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.51 Total: 1.06 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -5.22 Total: -1.50 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.68 Total: -55.11 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.87 -9.19 -45.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273051821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.568 kcal (2) G-P(sol) polarization free energy of solvation -35.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds