Wall clock time and date at job start Tue Mar 31 2020 10:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47405 * 2 1 4 4 N 1.30864 * 126.20372 * 275.37664 * 3 2 1 5 5 C 1.34575 * 107.28977 * 179.97438 * 4 3 2 6 6 C 1.47827 * 126.02208 * 180.02562 * 5 4 3 7 7 O 1.21551 * 120.00585 * 0.02562 * 6 5 4 8 8 N 1.34791 * 119.99717 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99734 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46642 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.46863 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99989 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99900 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99834 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00217 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47129 * 89.99558 * 15 13 11 17 17 H 1.48501 * 109.47385 * 209.99994 * 15 13 11 18 18 H 1.48502 * 109.46879 * 330.00040 * 15 13 11 19 19 N 1.31561 * 107.94957 * 359.74274 * 5 4 3 20 20 N 1.28853 * 108.70962 * 0.42936 * 19 5 4 21 21 C 1.40150 * 125.77155 * 179.84060 * 20 19 5 22 22 C 1.38851 * 120.05939 * 224.09408 * 21 20 19 23 23 C 1.38117 * 119.92633 * 179.97438 * 22 21 20 24 24 C 1.38289 * 120.06770 * 359.97438 * 23 22 21 25 25 C 1.38283 * 120.13507 * 0.02562 * 24 23 22 26 26 C 1.38116 * 120.06830 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.47163 * 304.97507 * 1 2 3 28 28 H 1.09001 * 109.47064 * 64.97249 * 1 2 3 29 29 H 1.09002 * 109.47138 * 184.97420 * 1 2 3 30 30 H 1.09002 * 109.46854 * 239.99314 * 2 1 3 31 31 H 1.09000 * 109.46684 * 120.00333 * 2 1 3 32 32 H 0.96995 * 119.99721 * 359.97438 * 8 6 5 33 33 H 1.08998 * 109.47529 * 300.00015 * 9 8 6 34 34 H 1.09001 * 109.46956 * 60.00115 * 9 8 6 35 35 H 1.09002 * 109.47131 * 299.99520 * 10 9 8 36 36 H 1.09001 * 109.47307 * 60.00383 * 10 9 8 37 37 H 0.97002 * 119.99572 * 179.97438 * 14 13 11 38 38 H 1.07992 * 120.04231 * 359.97438 * 22 21 20 39 39 H 1.08002 * 119.96905 * 180.02562 * 23 22 21 40 40 H 1.07994 * 119.92750 * 179.72265 * 24 23 22 41 41 H 1.07996 * 119.96170 * 179.97438 * 25 24 23 42 42 H 1.08000 * 120.03102 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.1968 2.1825 -1.0513 5 6 2.6592 3.3693 -0.6170 6 6 2.9869 4.5368 -1.4624 7 8 2.8436 4.4738 -2.6678 8 7 3.4446 5.6714 -0.8966 9 6 3.7698 6.8282 -1.7345 10 6 4.2631 7.9755 -0.8505 11 6 4.5983 9.1654 -1.7124 12 1 4.4717 9.1091 -2.7835 13 6 5.0655 10.3262 -1.1335 14 7 5.3576 11.3648 -1.8857 15 14 5.2838 10.4239 0.7191 16 1 6.6560 9.9856 1.0796 17 1 5.0771 11.8240 1.1688 18 1 4.2917 9.5396 1.3816 19 7 2.7625 3.3093 0.6932 20 7 2.3937 2.1380 1.0837 21 6 2.3666 1.6876 2.4106 22 6 2.8474 0.4238 2.7260 23 6 2.8199 -0.0171 4.0346 24 6 2.3147 0.7990 5.0302 25 6 1.8353 2.0581 4.7191 26 6 1.8601 2.5047 3.4123 27 1 -0.3633 0.5891 0.8421 28 1 -0.3633 0.4348 -0.9312 29 1 -0.3633 -1.0238 0.0891 30 1 1.8933 -0.5140 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.5585 5.7218 0.0653 33 1 4.5502 6.5547 -2.4445 34 1 2.8795 7.1453 -2.2775 35 1 3.4822 8.2490 -0.1408 36 1 5.1533 7.6587 -0.3071 37 1 5.6859 12.1816 -1.4784 38 1 3.2424 -0.2138 1.9490 39 1 3.1940 -0.9999 4.2807 40 1 2.2902 0.4502 6.0520 41 1 1.4410 2.6930 5.4987 42 1 1.4858 3.4884 3.1701 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273051821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:00 Heat of formation + Delta-G solvation = 55.568609 kcal Electronic energy + Delta-G solvation = -24810.425260 eV Core-core repulsion = 21177.404973 eV Total energy + Delta-G solvation = -3633.020287 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.91646 -40.80073 -40.15181 -36.82759 -35.70341 -35.65253 -34.85342 -32.41863 -32.09929 -31.74115 -30.48502 -27.50225 -25.82069 -25.44904 -23.80665 -23.33518 -22.68429 -22.06686 -21.48208 -19.35564 -19.03593 -18.66220 -18.01950 -17.37027 -16.87162 -16.59906 -16.26927 -15.92453 -15.80905 -15.42772 -15.33768 -15.00679 -14.98363 -14.61218 -14.47998 -14.14867 -13.64811 -13.47621 -13.40575 -13.09968 -12.75190 -12.61210 -12.37418 -12.32766 -12.22669 -12.04337 -11.79812 -11.76002 -11.74259 -11.59000 -11.40459 -10.90017 -10.80565 -10.27015 -10.08395 -9.74212 -8.31524 -6.38757 -0.40584 0.25468 0.34338 0.90227 1.00848 1.37481 1.39657 1.51185 1.72103 2.07334 2.35246 2.57419 2.98517 3.03203 3.07138 3.44615 3.74053 3.79849 4.12040 4.17684 4.20100 4.25918 4.31651 4.34290 4.35857 4.40280 4.48843 4.68921 4.76453 4.88167 4.92453 4.93949 4.96567 5.02725 5.24103 5.27443 5.28217 5.31146 5.34409 5.43948 5.51453 5.57552 5.87159 6.17403 6.26589 6.67475 6.77495 6.94306 7.25562 8.85113 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.014854 B = 0.003005 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.563839 B = 9316.817389 C =10931.856776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 C 0.228 3.772 4 N -0.490 5.490 5 C 0.133 3.867 6 C 0.608 3.392 7 O -0.555 6.555 8 N -0.695 5.695 9 C 0.144 3.856 10 C -0.013 4.013 11 C -0.538 4.538 12 H 0.033 0.967 13 C 0.007 3.993 14 N -0.948 5.948 15 Si 0.956 3.044 16 H -0.265 1.265 17 H -0.283 1.283 18 H -0.241 1.241 19 N -0.278 5.278 20 N -0.244 5.244 21 C 0.085 3.915 22 C -0.113 4.113 23 C -0.094 4.094 24 C -0.096 4.096 25 C -0.104 4.104 26 C -0.112 4.112 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.415 0.585 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.037 0.963 36 H 0.035 0.965 37 H 0.269 0.731 38 H 0.150 0.850 39 H 0.172 0.828 40 H 0.165 0.835 41 H 0.155 0.845 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.121 -31.939 21.740 39.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 C -0.046 4.046 4 N -0.214 5.214 5 C -0.146 4.146 6 C 0.391 3.609 7 O -0.430 6.430 8 N -0.347 5.347 9 C 0.022 3.978 10 C -0.050 4.050 11 C -0.576 4.576 12 H 0.052 0.948 13 C -0.190 4.190 14 N -0.588 5.588 15 Si 0.778 3.222 16 H -0.190 1.190 17 H -0.209 1.209 18 H -0.164 1.164 19 N -0.117 5.117 20 N -0.034 5.034 21 C -0.003 4.003 22 C -0.132 4.132 23 C -0.112 4.112 24 C -0.114 4.114 25 C -0.123 4.123 26 C -0.132 4.132 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.140 0.860 32 H 0.251 0.749 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.167 0.833 39 H 0.189 0.811 40 H 0.183 0.817 41 H 0.172 0.828 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.989 -31.277 20.809 38.627 hybrid contribution 0.275 1.099 0.207 1.152 sum -8.714 -30.178 21.016 37.793 Atomic orbital electron populations 1.21725 0.92254 1.04407 1.01739 1.20659 0.97849 0.82851 1.07123 1.25971 0.98575 0.99519 0.80544 1.71232 1.18967 1.01876 1.29324 1.23513 1.07181 0.95722 0.88165 1.16542 0.77584 0.81082 0.85738 1.90782 1.54396 1.82922 1.14918 1.45852 1.64579 1.12063 1.12157 1.21253 0.99483 0.83710 0.93389 1.19660 0.97256 0.92260 0.95853 1.21197 1.44521 0.97622 0.94302 0.94817 1.26024 0.94038 0.94731 1.04249 1.70067 1.46044 1.04424 1.38272 0.85583 0.79974 0.77953 0.78676 1.18957 1.20913 1.16398 1.74291 1.19464 1.04624 1.13357 1.44580 1.43083 1.07665 1.08057 1.17981 1.06688 0.97005 0.78659 1.21357 0.99091 0.93249 0.99552 1.21507 0.97731 1.01676 0.90275 1.21841 0.95039 0.92962 1.01590 1.21428 0.98745 0.97398 0.94705 1.21200 0.99065 0.99555 0.93391 0.93312 0.93377 0.87739 0.86671 0.85973 0.74853 0.92636 0.92653 0.94506 0.94668 0.92240 0.83250 0.81079 0.81738 0.82760 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.90 71.98 0.71 -0.95 16 2 C -0.05 -0.59 6.17 29.85 0.18 -0.40 16 3 C 0.23 5.54 7.04 138.07 0.97 6.52 16 4 N -0.49 -16.66 11.41 -180.73 -2.06 -18.72 16 5 C 0.13 4.84 7.96 137.09 1.09 5.93 16 6 C 0.61 25.04 7.83 86.78 0.68 25.72 16 7 O -0.55 -26.77 17.09 -3.88 -0.07 -26.84 16 8 N -0.69 -26.63 5.55 -465.98 -2.59 -29.22 16 9 C 0.14 6.36 5.61 86.38 0.48 6.85 16 10 C -0.01 -0.59 4.16 29.85 0.12 -0.46 16 11 C -0.54 -31.48 9.66 25.60 0.25 -31.23 16 12 H 0.03 2.19 7.99 -2.91 -0.02 2.17 16 13 C 0.01 0.41 5.47 84.65 0.46 0.87 16 14 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 15 Si 0.96 43.48 27.47 68.60 1.88 45.37 16 16 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 19 N -0.28 -8.62 11.56 -52.43 -0.61 -9.23 16 20 N -0.24 -6.00 3.42 -179.21 -0.61 -6.61 16 21 C 0.09 1.47 6.10 38.10 0.23 1.70 16 22 C -0.11 -1.11 8.29 22.39 0.19 -0.92 16 23 C -0.09 -0.41 10.04 22.25 0.22 -0.19 16 24 C -0.10 -0.43 10.04 22.29 0.22 -0.21 16 25 C -0.10 -0.92 10.04 22.25 0.22 -0.69 16 26 C -0.11 -1.76 9.81 22.39 0.22 -1.54 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.12 1.29 8.14 -2.39 -0.02 1.28 16 31 H 0.12 0.78 4.89 -2.39 -0.01 0.77 16 32 H 0.41 13.88 8.17 -92.71 -0.76 13.12 16 33 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.04 1.64 7.20 -2.39 -0.02 1.62 16 36 H 0.04 1.55 7.57 -2.39 -0.02 1.53 16 37 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 38 H 0.15 1.00 6.45 -2.91 -0.02 0.98 16 39 H 0.17 -0.36 8.06 -2.91 -0.02 -0.38 16 40 H 0.17 -0.26 8.06 -2.91 -0.02 -0.28 16 41 H 0.15 0.72 8.06 -2.91 -0.02 0.70 16 42 H 0.12 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -83.09 360.99 2.75 -80.33 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.24 Total: 13.56 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 6.27 Total: 10.97 kcal Atomic # 7 Polarization: -117.83 SS G_CDS: -5.57 Total: -123.40 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.07 Total: -26.84 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.37 kcal Total: -83.09 2.75 -80.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273051821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.904 kcal (2) G-P(sol) polarization free energy of solvation -83.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds