Wall clock time and date at job start Tue Mar 31 2020 10:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47003 * 2 1 4 4 C 1.38358 * 120.34766 * 270.02677 * 3 2 1 5 5 N 1.31925 * 121.08086 * 179.97438 * 4 3 2 6 6 C 1.31702 * 121.88056 * 359.69548 * 5 4 3 7 7 C 1.39523 * 120.56412 * 0.59276 * 6 5 4 8 8 C 1.47810 * 120.56444 * 179.70411 * 7 6 5 9 9 O 1.21566 * 120.00790 * 179.71986 * 8 7 6 10 10 N 1.34783 * 119.99396 * 359.71904 * 8 7 6 11 11 C 1.40087 * 119.99697 * 180.02562 * 10 8 7 12 12 C 1.40423 * 125.97680 * 0.26752 * 11 10 8 13 13 C 1.35232 * 107.86638 * 180.11098 * 12 11 10 14 14 C 1.50703 * 126.06766 * 179.90771 * 13 12 11 15 15 N 1.34973 * 107.86541 * 359.64383 * 13 12 11 16 16 C 1.46498 * 125.97410 * 180.22663 * 15 13 12 17 17 C 1.50702 * 109.47036 * 90.00121 * 16 15 13 18 18 H 1.08000 * 120.00135 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99820 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00047 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00018 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46879 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47089 * 120.00065 * 21 19 17 24 24 H 1.48501 * 109.46995 * 240.00076 * 21 19 17 25 25 N 1.31230 * 125.97019 * 179.97438 * 11 10 8 26 26 C 1.38349 * 120.34881 * 90.00101 * 3 2 1 27 27 H 1.08997 * 109.47077 * 59.99888 * 1 2 3 28 28 H 1.09000 * 109.46935 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46973 * 299.99531 * 1 2 3 30 30 H 1.09000 * 109.46973 * 240.00469 * 2 1 3 31 31 H 1.09001 * 109.47745 * 119.99839 * 2 1 3 32 32 H 1.07998 * 119.45718 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.71163 * 180.29181 * 6 5 4 34 34 H 0.96993 * 120.00348 * 359.97438 * 10 8 7 35 35 H 1.07998 * 126.06852 * 0.02562 * 12 11 10 36 36 H 1.09002 * 109.47152 * 269.68932 * 14 13 12 37 37 H 1.09001 * 109.46980 * 149.69032 * 14 13 12 38 38 H 1.09004 * 109.47113 * 29.69013 * 14 13 12 39 39 H 1.09005 * 109.47009 * 210.00038 * 16 15 13 40 40 H 1.09004 * 109.46994 * 330.00070 * 16 15 13 41 41 H 0.97008 * 120.00045 * 179.97438 * 20 19 17 42 42 H 1.08006 * 120.85504 * 0.04405 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2648 2.0801 -1.1940 5 7 2.7040 3.3240 -1.2109 6 6 2.9350 3.9952 -0.1015 7 6 2.7312 3.3996 1.1436 8 6 2.9966 4.1508 2.3886 9 8 2.8107 3.6236 3.4681 10 7 3.4449 5.4204 2.3270 11 6 3.6970 6.1322 3.5069 12 6 3.5321 5.6469 4.8143 13 6 3.8770 6.6354 5.6703 14 6 3.8510 6.5552 7.1749 15 7 4.2542 7.7045 4.9379 16 6 4.7099 8.9925 5.4668 17 6 6.2058 8.9606 5.6467 18 1 6.7614 8.0699 5.3930 19 6 6.8651 10.0685 6.1354 20 7 6.1886 11.1533 6.4440 21 14 8.7193 10.0288 6.3592 22 1 9.2398 8.7018 5.9429 23 1 9.3413 11.0888 5.5256 24 1 9.0506 10.2641 7.7875 25 7 4.1336 7.3673 3.5836 26 6 2.2653 2.0799 1.1939 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0837 1.5680 -2.1274 33 1 3.2898 5.0138 -0.1562 34 1 3.5936 5.8410 1.4657 35 1 3.1894 4.6599 5.0876 36 1 2.8760 6.8787 7.5393 37 1 4.6257 7.2022 7.5867 38 1 4.0327 5.5268 7.4872 39 1 4.4448 9.7863 4.7684 40 1 4.2322 9.1799 6.4284 41 1 6.6525 11.9327 6.7881 42 1 2.0926 1.5892 2.1404 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279857437.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:25 Heat of formation + Delta-G solvation = 68.515042 kcal Electronic energy + Delta-G solvation = -24588.347659 eV Core-core repulsion = 20955.888772 eV Total energy + Delta-G solvation = -3632.458888 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.13636 -40.48183 -39.00047 -35.32265 -34.85968 -33.46148 -32.59958 -31.45388 -30.86987 -30.04738 -26.85293 -26.39573 -25.18136 -24.65001 -23.01367 -22.45601 -21.15155 -19.91086 -19.30700 -17.67735 -17.16555 -16.74518 -16.61002 -15.97643 -15.41914 -15.34400 -15.05674 -14.43968 -14.37007 -14.24257 -13.99875 -13.85786 -13.42921 -13.12028 -13.00799 -12.59943 -12.50965 -12.37029 -12.20412 -11.94401 -11.70518 -11.46731 -11.44656 -11.10867 -10.88207 -10.49585 -10.32290 -10.22344 -10.13290 -9.87616 -9.58535 -9.55585 -9.37707 -8.66955 -7.99454 -7.51416 -6.27820 -4.35510 0.30186 0.83754 2.39697 2.62790 2.86163 3.19019 3.27103 3.33050 3.40960 3.74583 3.76744 3.95034 4.23084 4.28553 4.41651 4.49912 4.57347 4.65800 4.90266 4.92075 5.05867 5.08045 5.29793 5.38956 5.45550 5.50650 5.65973 5.68808 5.77854 5.85788 5.89512 6.07010 6.17482 6.19350 6.43097 6.48641 6.66805 6.89748 7.02331 7.35469 7.49230 7.56111 7.65103 7.86179 8.00746 8.10075 8.59322 8.72638 9.31111 10.79488 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.025820 B = 0.002456 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.170809 B =11397.005496 C =11906.546456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 C -0.142 4.142 4 C 0.122 3.878 5 N -0.482 5.482 6 C 0.130 3.870 7 C -0.174 4.174 8 C 0.569 3.431 9 O -0.509 6.509 10 N -0.623 5.623 11 C 0.262 3.738 12 C -0.289 4.289 13 C 0.092 3.908 14 C -0.089 4.089 15 N -0.315 5.315 16 C 0.258 3.742 17 C -0.536 4.536 18 H 0.065 0.935 19 C 0.065 3.935 20 N -0.891 5.891 21 Si 0.906 3.094 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 N -0.317 5.317 26 C -0.013 4.013 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.410 0.590 35 H 0.160 0.840 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.268 0.732 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.188 -19.517 -11.123 24.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.144 4.144 4 C -0.035 4.035 5 N -0.190 5.190 6 C -0.029 4.029 7 C -0.180 4.180 8 C 0.354 3.646 9 O -0.384 6.384 10 N -0.271 5.271 11 C 0.009 3.991 12 C -0.320 4.320 13 C -0.039 4.039 14 C -0.147 4.147 15 N -0.097 5.097 16 C 0.140 3.860 17 C -0.575 4.575 18 H 0.083 0.917 19 C -0.138 4.138 20 N -0.529 5.529 21 Si 0.733 3.267 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 N -0.148 5.148 26 C -0.040 4.040 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.177 0.823 33 H 0.178 0.822 34 H 0.246 0.754 35 H 0.177 0.823 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.756 -18.140 -11.703 23.690 hybrid contribution 0.800 -0.564 0.812 1.272 sum -8.956 -18.704 -10.891 23.423 Atomic orbital electron populations 1.21781 0.94284 1.02156 1.02469 1.20498 0.96447 0.91219 1.03635 1.20935 1.01443 0.98343 0.93682 1.22914 0.92553 0.90268 0.97722 1.67727 1.11938 1.08497 1.30800 1.23039 0.93447 0.99581 0.86797 1.20873 1.06366 0.96495 0.94253 1.17903 0.77384 0.80573 0.88700 1.90730 1.50488 1.68082 1.29082 1.42284 1.64723 1.12680 1.07389 1.18910 1.01952 0.91773 0.86442 1.21241 1.19046 1.02387 0.89286 1.21076 0.99095 0.88267 0.95468 1.20386 1.03066 1.03319 0.87953 1.49026 1.46690 1.12960 1.01043 1.19721 0.95735 0.75765 0.94783 1.21358 0.91077 1.00401 1.44628 0.91673 1.24934 0.99318 0.94822 0.94738 1.69930 1.36218 1.03483 1.43263 0.86301 0.84108 0.78377 0.77911 1.19571 1.20629 1.20625 1.77269 1.26651 1.12500 0.98354 1.21627 0.91057 0.92091 0.99189 0.92431 0.91964 0.92317 0.90353 0.90365 0.82307 0.82208 0.75395 0.82303 0.91025 0.89846 0.90578 0.92926 0.92715 0.92281 0.83309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.89 37.16 0.37 -0.38 16 2 C -0.08 -0.42 6.09 -27.88 -0.17 -0.59 16 3 C -0.14 -1.12 5.15 -104.53 -0.54 -1.65 16 4 C 0.12 1.01 10.85 -17.47 -0.19 0.82 16 5 N -0.48 -5.01 10.35 -12.91 -0.13 -5.14 16 6 C 0.13 1.34 10.71 -17.13 -0.18 1.16 16 7 C -0.17 -1.99 5.89 -104.83 -0.62 -2.61 16 8 C 0.57 8.36 7.75 -12.34 -0.10 8.27 16 9 O -0.51 -8.84 13.55 5.31 0.07 -8.77 16 10 N -0.62 -9.70 5.40 -12.00 -0.06 -9.76 16 11 C 0.26 5.28 8.11 -154.44 -1.25 4.03 16 12 C -0.29 -5.88 9.52 -39.83 -0.38 -6.26 16 13 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16 14 C -0.09 -1.50 9.89 36.01 0.36 -1.14 16 15 N -0.31 -7.41 3.59 -58.32 -0.21 -7.62 16 16 C 0.26 6.55 5.81 -5.19 -0.03 6.52 16 17 C -0.54 -14.67 9.39 -34.44 -0.32 -14.99 16 18 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 19 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -24.90 13.29 55.43 0.74 -24.16 16 21 Si 0.91 21.03 29.54 -169.99 -5.02 16.00 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 N -0.32 -7.27 12.59 31.43 0.40 -6.87 16 26 C -0.01 -0.13 9.39 -38.87 -0.37 -0.50 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.30 8.09 -51.93 -0.42 -0.12 16 31 H 0.08 0.39 8.09 -51.93 -0.42 -0.03 16 32 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.16 1.34 6.42 -52.49 -0.34 1.00 16 34 H 0.41 5.12 6.89 -40.82 -0.28 4.84 16 35 H 0.16 3.12 5.91 -52.49 -0.31 2.81 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.05 1.43 8.14 -51.93 -0.42 1.00 16 40 H 0.06 1.37 7.65 -51.93 -0.40 0.98 16 41 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.15 1.41 7.74 -52.48 -0.41 1.00 16 LS Contribution 361.97 15.07 5.45 5.45 Total: -1.00 -32.70 361.97 -8.33 -41.03 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.48 Total: 4.14 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -4.09 Total: -4.31 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.72 Total: -53.56 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.07 Total: -8.77 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.70 -8.33 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279857437.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.546 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds