Wall clock time and date at job start Tue Mar 31 2020 10:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47003 * 2 1 4 4 C 1.38358 * 120.34766 * 270.02677 * 3 2 1 5 5 N 1.31925 * 121.08086 * 179.97438 * 4 3 2 6 6 C 1.31702 * 121.88056 * 359.69548 * 5 4 3 7 7 C 1.39523 * 120.56412 * 0.59276 * 6 5 4 8 8 C 1.47810 * 120.56444 * 179.70411 * 7 6 5 9 9 O 1.21566 * 120.00790 * 179.71986 * 8 7 6 10 10 N 1.34783 * 119.99396 * 359.71904 * 8 7 6 11 11 C 1.40087 * 119.99697 * 180.02562 * 10 8 7 12 12 C 1.40423 * 125.97680 * 0.26752 * 11 10 8 13 13 C 1.35232 * 107.86638 * 180.11098 * 12 11 10 14 14 C 1.50703 * 126.06766 * 179.90771 * 13 12 11 15 15 N 1.34973 * 107.86541 * 359.64383 * 13 12 11 16 16 C 1.46498 * 125.97410 * 180.22663 * 15 13 12 17 17 C 1.50702 * 109.47036 * 90.00121 * 16 15 13 18 18 H 1.08000 * 120.00135 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99820 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00047 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00018 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46879 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47089 * 120.00065 * 21 19 17 24 24 H 1.48501 * 109.46995 * 240.00076 * 21 19 17 25 25 N 1.31230 * 125.97019 * 179.97438 * 11 10 8 26 26 C 1.38349 * 120.34881 * 90.00101 * 3 2 1 27 27 H 1.08997 * 109.47077 * 59.99888 * 1 2 3 28 28 H 1.09000 * 109.46935 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46973 * 299.99531 * 1 2 3 30 30 H 1.09000 * 109.46973 * 240.00469 * 2 1 3 31 31 H 1.09001 * 109.47745 * 119.99839 * 2 1 3 32 32 H 1.07998 * 119.45718 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.71163 * 180.29181 * 6 5 4 34 34 H 0.96993 * 120.00348 * 359.97438 * 10 8 7 35 35 H 1.07998 * 126.06852 * 0.02562 * 12 11 10 36 36 H 1.09002 * 109.47152 * 269.68932 * 14 13 12 37 37 H 1.09001 * 109.46980 * 149.69032 * 14 13 12 38 38 H 1.09004 * 109.47113 * 29.69013 * 14 13 12 39 39 H 1.09005 * 109.47009 * 210.00038 * 16 15 13 40 40 H 1.09004 * 109.46994 * 330.00070 * 16 15 13 41 41 H 0.97008 * 120.00045 * 179.97438 * 20 19 17 42 42 H 1.08006 * 120.85504 * 0.04405 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2648 2.0801 -1.1940 5 7 2.7040 3.3240 -1.2109 6 6 2.9350 3.9952 -0.1015 7 6 2.7312 3.3996 1.1436 8 6 2.9966 4.1508 2.3886 9 8 2.8107 3.6236 3.4681 10 7 3.4449 5.4204 2.3270 11 6 3.6970 6.1322 3.5069 12 6 3.5321 5.6469 4.8143 13 6 3.8770 6.6354 5.6703 14 6 3.8510 6.5552 7.1749 15 7 4.2542 7.7045 4.9379 16 6 4.7099 8.9925 5.4668 17 6 6.2058 8.9606 5.6467 18 1 6.7614 8.0699 5.3930 19 6 6.8651 10.0685 6.1354 20 7 6.1886 11.1533 6.4440 21 14 8.7193 10.0288 6.3592 22 1 9.2398 8.7018 5.9429 23 1 9.3413 11.0888 5.5256 24 1 9.0506 10.2641 7.7875 25 7 4.1336 7.3673 3.5836 26 6 2.2653 2.0799 1.1939 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0837 1.5680 -2.1274 33 1 3.2898 5.0138 -0.1562 34 1 3.5936 5.8410 1.4657 35 1 3.1894 4.6599 5.0876 36 1 2.8760 6.8787 7.5393 37 1 4.6257 7.2022 7.5867 38 1 4.0327 5.5268 7.4872 39 1 4.4448 9.7863 4.7684 40 1 4.2322 9.1799 6.4284 41 1 6.6525 11.9327 6.7881 42 1 2.0926 1.5892 2.1404 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279857437.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:25 Heat of formation + Delta-G solvation = 48.897436 kcal Electronic energy + Delta-G solvation = -24589.198343 eV Core-core repulsion = 20955.888772 eV Total energy + Delta-G solvation = -3633.309571 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.44692 -41.63122 -40.18130 -36.51426 -35.76173 -35.30699 -33.65082 -32.88081 -32.57321 -30.71906 -28.67947 -27.91185 -26.24187 -25.37380 -24.70402 -23.32641 -22.27704 -21.37644 -20.69656 -18.84282 -18.63978 -18.13828 -17.60345 -17.38648 -16.83532 -16.69338 -16.28077 -15.89735 -15.76152 -15.15968 -14.79173 -14.69350 -14.64796 -14.34653 -14.18623 -13.84287 -13.68188 -13.61508 -13.59661 -13.17681 -13.14301 -12.85528 -12.70486 -12.41338 -12.27602 -12.13807 -11.86184 -11.64122 -11.39819 -11.25442 -10.94076 -10.74815 -10.51247 -10.08169 -9.63359 -9.19345 -8.34265 -6.51630 -0.52569 0.10666 0.95559 1.23286 1.36251 1.38171 1.47363 1.51631 2.13951 2.21047 2.36227 2.73894 2.95707 3.14477 3.50271 3.68510 3.72351 3.84905 3.87911 4.06514 4.11100 4.32087 4.43537 4.50386 4.53585 4.70540 4.76281 4.82543 4.85518 4.89353 4.92828 4.96097 4.99171 5.10681 5.14351 5.23637 5.33001 5.39188 5.52626 5.53308 5.79464 5.85923 6.14728 6.23125 6.60543 6.74937 6.85787 6.99177 7.19442 8.72099 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.025820 B = 0.002456 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.170809 B =11397.005496 C =11906.546456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.133 4.133 4 C 0.127 3.873 5 N -0.500 5.500 6 C 0.129 3.871 7 C -0.189 4.189 8 C 0.573 3.427 9 O -0.538 6.538 10 N -0.618 5.618 11 C 0.271 3.729 12 C -0.298 4.298 13 C 0.089 3.911 14 C -0.086 4.086 15 N -0.341 5.341 16 C 0.275 3.725 17 C -0.552 4.552 18 H 0.049 0.951 19 C 0.023 3.977 20 N -0.917 5.917 21 Si 0.971 3.029 22 H -0.274 1.274 23 H -0.274 1.274 24 H -0.267 1.267 25 N -0.355 5.355 26 C -0.020 4.020 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.192 0.808 33 H 0.172 0.828 34 H 0.423 0.577 35 H 0.168 0.832 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.025 0.975 40 H 0.054 0.946 41 H 0.274 0.726 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.164 -21.665 -12.098 26.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.135 4.135 4 C -0.029 4.029 5 N -0.208 5.208 6 C -0.029 4.029 7 C -0.194 4.194 8 C 0.361 3.639 9 O -0.414 6.414 10 N -0.267 5.267 11 C 0.017 3.983 12 C -0.328 4.328 13 C -0.041 4.041 14 C -0.144 4.144 15 N -0.123 5.123 16 C 0.156 3.844 17 C -0.591 4.591 18 H 0.067 0.933 19 C -0.178 4.178 20 N -0.555 5.555 21 Si 0.795 3.205 22 H -0.199 1.199 23 H -0.200 1.200 24 H -0.191 1.191 25 N -0.185 5.185 26 C -0.046 4.046 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.209 0.791 33 H 0.189 0.811 34 H 0.262 0.738 35 H 0.186 0.814 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.122 0.878 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.748 -20.300 -12.702 25.855 hybrid contribution 0.683 -0.050 1.006 1.217 sum -9.065 -20.351 -11.696 25.162 Atomic orbital electron populations 1.21780 0.94019 1.02897 1.01936 1.20581 0.96503 0.89501 1.04962 1.21198 1.00227 0.99443 0.92658 1.23514 0.90656 0.89577 0.99169 1.67807 1.12804 1.09633 1.30549 1.23202 0.93095 1.00184 0.86413 1.20617 1.08848 0.97044 0.92907 1.18432 0.75966 0.79928 0.89559 1.90695 1.51663 1.68538 1.30514 1.42389 1.64781 1.12901 1.06672 1.19235 0.99852 0.91105 0.88101 1.21436 1.19385 1.02597 0.89398 1.21773 0.97660 0.87372 0.97336 1.20517 1.03809 1.04808 0.85260 1.48824 1.48687 1.13079 1.01739 1.19277 0.94931 0.76322 0.93887 1.21453 0.92082 1.00179 1.45337 0.93291 1.25729 1.03785 0.94253 0.94063 1.70007 1.38058 1.04034 1.43444 0.85306 0.78530 0.78120 0.78503 1.19911 1.19971 1.19149 1.77189 1.28792 1.14070 0.98451 1.21785 0.90970 0.91630 1.00225 0.92218 0.90632 0.93622 0.88141 0.89992 0.79092 0.81069 0.73811 0.81425 0.88781 0.91341 0.87848 0.95653 0.92862 0.91709 0.83336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 71.98 0.71 -0.42 16 2 C -0.08 -0.59 6.09 29.85 0.18 -0.41 16 3 C -0.13 -1.78 5.15 -19.81 -0.10 -1.88 16 4 C 0.13 1.74 10.85 84.71 0.92 2.66 16 5 N -0.50 -9.44 10.35 -194.75 -2.01 -11.45 16 6 C 0.13 2.53 10.71 85.02 0.91 3.44 16 7 C -0.19 -4.19 5.89 -20.00 -0.12 -4.30 16 8 C 0.57 16.81 7.75 86.78 0.67 17.48 16 9 O -0.54 -18.69 13.55 -3.92 -0.05 -18.74 16 10 N -0.62 -19.34 5.40 -310.14 -1.68 -21.02 16 11 C 0.27 11.12 8.11 133.35 1.08 12.20 16 12 C -0.30 -12.18 9.52 22.11 0.21 -11.97 16 13 C 0.09 3.76 6.92 41.38 0.29 4.04 16 14 C -0.09 -2.84 9.89 71.24 0.70 -2.14 16 15 N -0.34 -16.56 3.59 -338.44 -1.22 -17.78 16 16 C 0.27 14.53 5.81 85.63 0.50 15.03 16 17 C -0.55 -31.01 9.39 25.60 0.24 -30.77 16 18 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 19 C 0.02 1.25 5.46 84.65 0.46 1.71 16 20 N -0.92 -51.73 13.29 21.45 0.28 -51.45 16 21 Si 0.97 43.16 29.54 68.60 2.03 45.18 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 25 N -0.35 -16.75 12.59 -54.48 -0.69 -17.44 16 26 C -0.02 -0.37 9.39 22.73 0.21 -0.16 16 27 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.10 0.37 8.09 -2.39 -0.02 0.35 16 31 H 0.08 0.60 8.09 -2.39 -0.02 0.58 16 32 H 0.19 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.17 2.74 6.42 -2.91 -0.02 2.72 16 34 H 0.42 10.61 6.89 -92.71 -0.64 9.97 16 35 H 0.17 6.55 5.91 -2.91 -0.02 6.54 16 36 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.07 2.48 7.71 -2.39 -0.02 2.46 16 38 H 0.10 2.82 8.14 -2.38 -0.02 2.80 16 39 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.05 2.78 7.65 -2.39 -0.02 2.76 16 41 H 0.27 14.36 8.31 -92.70 -0.77 13.59 16 42 H 0.15 2.72 7.74 -2.91 -0.02 2.69 16 Total: -1.00 -71.44 361.97 3.95 -67.48 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.42 Total: 20.70 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 6.87 Total: 4.50 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -5.31 Total: -119.13 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.05 Total: -18.74 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -71.44 3.95 -67.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279857437.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.381 kcal (2) G-P(sol) polarization free energy of solvation -71.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds