Wall clock time and date at job start Tue Mar 31 2020 10:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33243 * 125.50250 * 2 1 4 4 C 1.30870 * 109.83878 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.97800 * 179.74028 * 4 3 2 6 6 N 1.34690 * 108.04140 * 359.97438 * 4 3 2 7 7 C 1.40254 * 126.84360 * 179.97438 * 6 4 3 8 8 C 1.38703 * 120.09730 * 49.20070 * 7 6 4 9 9 C 1.38177 * 120.00181 * 179.72611 * 8 7 6 10 10 C 1.38318 * 120.20265 * 0.55401 * 9 8 7 11 11 C 1.38170 * 120.19540 * 359.72340 * 10 9 8 12 12 C 1.38745 * 119.99031 * 359.97438 * 11 10 9 13 13 N 1.39985 * 120.09683 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99714 * 34.57699 * 13 12 11 15 15 O 1.21286 * 120.00038 * 355.69050 * 14 13 12 16 16 C 1.50700 * 119.99474 * 175.69774 * 14 13 12 17 17 C 1.53000 * 109.46804 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47457 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99576 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00245 * 180.02562 * 18 17 16 21 21 N 1.31508 * 119.99753 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99705 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47047 * 90.00281 * 22 20 18 24 24 H 1.48501 * 109.47020 * 210.00051 * 22 20 18 25 25 H 1.48501 * 109.47444 * 330.00109 * 22 20 18 26 26 N 1.30774 * 125.49983 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.46509 * 89.97841 * 1 2 3 28 28 H 1.09000 * 109.47102 * 209.97513 * 1 2 3 29 29 H 1.08998 * 109.47130 * 329.97702 * 1 2 3 30 30 H 1.09002 * 109.47939 * 85.07867 * 5 4 3 31 31 H 1.08999 * 109.47298 * 205.08132 * 5 4 3 32 32 H 1.09004 * 109.47270 * 325.07402 * 5 4 3 33 33 H 1.07999 * 119.99866 * 359.97438 * 8 7 6 34 34 H 1.08003 * 119.90110 * 180.28204 * 9 8 7 35 35 H 1.08006 * 119.90323 * 179.74779 * 10 9 8 36 36 H 1.07999 * 120.00021 * 180.02562 * 11 10 9 37 37 H 0.97000 * 119.99759 * 214.56728 * 13 12 11 38 38 H 1.08992 * 109.47218 * 299.99038 * 16 14 13 39 39 H 1.09001 * 109.47235 * 59.99966 * 16 14 13 40 40 H 1.09000 * 109.47489 * 300.00085 * 17 16 14 41 41 H 1.09001 * 109.47562 * 59.99711 * 17 16 14 42 42 H 0.97005 * 119.99486 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2808 1.0847 0.0000 4 6 3.5409 0.7314 -0.0006 5 6 4.7226 1.6666 -0.0063 6 7 3.5968 -0.6144 -0.0003 7 6 4.7531 -1.4081 -0.0013 8 6 5.7712 -1.1551 0.9062 9 6 6.9071 -1.9418 0.9072 10 6 7.0384 -2.9756 -0.0023 11 6 6.0318 -3.2314 -0.9137 12 6 4.8851 -2.4504 -0.9178 13 7 3.8642 -2.7072 -1.8405 14 6 3.6002 -3.9738 -2.2181 15 8 4.2967 -4.8831 -1.8195 16 6 2.4396 -4.2599 -3.1359 17 6 2.3622 -5.7638 -3.4065 18 6 1.2013 -6.0501 -4.3237 19 1 0.5810 -5.2404 -4.6785 20 6 0.9311 -7.3459 -4.7099 21 7 1.6868 -8.3318 -4.2783 22 14 -0.5083 -7.7007 -5.8463 23 1 -0.0516 -7.6386 -7.2580 24 1 -1.0438 -9.0556 -5.5585 25 1 -1.5740 -6.6902 -5.6259 26 7 2.2664 -1.0647 -0.0005 27 1 -0.3632 0.0004 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 4.9546 1.9655 1.0160 31 1 5.5844 1.1604 -0.4412 32 1 4.4837 2.5504 -0.5979 33 1 5.6743 -0.3456 1.6145 34 1 7.6968 -1.7462 1.6175 35 1 7.9301 -3.5850 0.0002 36 1 6.1375 -4.0396 -1.6221 37 1 3.3468 -1.9736 -2.2080 38 1 1.5142 -3.9270 -2.6660 39 1 2.5810 -3.7285 -4.0770 40 1 3.2877 -6.0965 -3.8765 41 1 2.2211 -6.2956 -2.4655 42 1 1.4965 -9.2434 -4.5498 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291388920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:50 Heat of formation + Delta-G solvation = 73.412180 kcal Electronic energy + Delta-G solvation = -25502.991780 eV Core-core repulsion = 21870.745248 eV Total energy + Delta-G solvation = -3632.246532 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.53298 -40.36993 -38.54009 -34.86904 -34.54876 -33.53510 -32.89064 -31.28910 -30.69210 -29.63173 -29.22125 -27.42311 -25.78617 -23.56800 -23.05534 -21.50266 -20.80682 -20.62544 -19.77767 -18.26451 -17.31144 -17.04707 -16.29119 -15.74210 -15.41435 -15.19358 -14.71348 -14.59077 -14.45175 -14.08523 -13.94828 -13.67163 -13.43610 -13.28556 -13.03157 -12.67428 -12.58094 -12.36416 -12.23511 -12.16172 -12.01540 -11.68486 -11.21358 -10.95778 -10.62987 -10.51027 -10.25853 -10.17620 -10.02410 -9.73839 -9.65050 -9.31908 -9.12491 -8.85250 -8.35834 -8.17120 -5.99128 -4.03635 0.65685 1.10569 1.56507 2.05121 2.66081 2.95716 3.18465 3.31975 3.38314 3.41252 3.55425 3.76606 4.29716 4.43812 4.45269 4.63716 4.78321 4.98568 5.01981 5.03608 5.14382 5.21733 5.34462 5.36148 5.42703 5.43519 5.60868 5.62421 5.70132 5.94885 6.00629 6.10849 6.15724 6.18486 6.24423 6.30969 6.41093 6.63815 6.78368 6.96050 7.53707 7.69882 7.79400 7.91131 8.01873 8.31792 8.50163 9.03744 9.60107 11.11830 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.014045 B = 0.003529 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.159882 B = 7931.244311 C = 9618.374936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.222 3.778 3 N -0.537 5.537 4 C 0.282 3.718 5 C -0.078 4.078 6 N -0.328 5.328 7 C 0.093 3.907 8 C -0.097 4.097 9 C -0.129 4.129 10 C -0.088 4.088 11 C -0.114 4.114 12 C 0.183 3.817 13 N -0.676 5.676 14 C 0.515 3.485 15 O -0.512 6.512 16 C -0.127 4.127 17 C 0.038 3.962 18 C -0.528 4.528 19 H 0.056 0.944 20 C 0.059 3.941 21 N -0.889 5.889 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 N -0.303 5.303 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.153 0.847 37 H 0.407 0.593 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.024 0.976 41 H 0.025 0.975 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.964 21.442 10.505 25.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.060 4.060 3 N -0.266 5.266 4 C 0.007 3.993 5 C -0.137 4.137 6 N -0.113 5.113 7 C -0.001 4.001 8 C -0.118 4.118 9 C -0.149 4.149 10 C -0.107 4.107 11 C -0.135 4.135 12 C 0.084 3.916 13 N -0.320 5.320 14 C 0.306 3.694 15 O -0.385 6.385 16 C -0.167 4.167 17 C 0.001 3.999 18 C -0.566 4.566 19 H 0.074 0.926 20 C -0.143 4.143 21 N -0.528 5.528 22 Si 0.721 3.279 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 N -0.129 5.129 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.171 0.829 37 H 0.243 0.757 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.999 20.095 10.718 24.488 hybrid contribution -0.890 0.106 -0.671 1.119 sum 8.109 20.201 10.047 23.974 Atomic orbital electron populations 1.20135 0.83559 1.04101 1.04090 1.24459 0.98449 0.85588 0.97500 1.70420 0.99550 1.30638 1.25972 1.24547 0.95392 0.83295 0.96054 1.20456 0.91438 0.97215 1.04626 1.47416 1.04519 1.04694 1.54695 1.17218 0.86019 0.97865 0.98994 1.20817 0.93403 1.00900 0.96654 1.20943 0.97655 0.96010 1.00261 1.21251 0.98666 0.96563 0.94219 1.21436 0.90600 1.00399 1.01036 1.17785 0.89105 0.94937 0.89723 1.43897 1.34714 1.10333 1.43102 1.21863 0.86400 0.80418 0.80718 1.90655 1.49459 1.44108 1.54297 1.21913 0.93739 1.04273 0.96784 1.18915 0.97520 0.85954 0.97549 1.21185 1.13370 0.92820 1.29234 0.92564 1.25015 0.96594 0.96336 0.96363 1.69993 1.38620 0.99654 1.44505 0.86576 0.82654 0.77652 0.80994 1.20648 1.21175 1.19839 1.78417 0.85790 1.21888 1.26844 0.89500 0.89760 0.89604 0.88935 0.89649 0.88387 0.85207 0.84910 0.84851 0.82907 0.75746 0.89664 0.89958 0.95727 0.95676 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.59 10.51 36.01 0.38 -0.21 16 2 C 0.22 3.00 8.14 -156.80 -1.28 1.73 16 3 N -0.54 -7.07 11.19 -8.08 -0.09 -7.17 16 4 C 0.28 3.27 7.84 -155.43 -1.22 2.05 16 5 C -0.08 -0.52 9.37 36.01 0.34 -0.18 16 6 N -0.33 -4.42 3.30 -7.91 -0.03 -4.44 16 7 C 0.09 1.21 5.93 -83.39 -0.49 0.71 16 8 C -0.10 -0.95 8.61 -39.43 -0.34 -1.29 16 9 C -0.13 -1.14 10.04 -39.57 -0.40 -1.53 16 10 C -0.09 -0.93 10.04 -39.58 -0.40 -1.32 16 11 C -0.11 -1.61 8.70 -39.42 -0.34 -1.95 16 12 C 0.18 2.73 6.32 -83.51 -0.53 2.20 16 13 N -0.68 -10.93 4.75 -9.75 -0.05 -10.98 16 14 C 0.52 10.18 7.67 -10.99 -0.08 10.10 16 15 O -0.51 -11.68 13.40 5.55 0.07 -11.60 16 16 C -0.13 -2.64 5.64 -27.88 -0.16 -2.80 16 17 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 18 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 16 19 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -27.34 13.29 55.43 0.74 -26.60 16 22 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 N -0.30 -4.68 11.77 32.43 0.38 -4.30 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.49 7.24 -51.93 -0.38 0.12 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.13 0.98 7.64 -52.49 -0.40 0.58 16 34 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 35 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.15 2.47 6.19 -52.49 -0.32 2.14 16 37 H 0.41 6.02 8.14 -40.82 -0.33 5.69 16 38 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 41 H 0.02 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 360.76 15.07 5.44 5.44 Total: -1.00 -35.90 360.76 -9.23 -45.13 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.62 Total: 3.14 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -5.05 Total: -5.30 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.96 Total: -53.49 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.07 Total: -11.60 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.90 -9.23 -45.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291388920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.540 kcal (2) G-P(sol) polarization free energy of solvation -35.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds