Wall clock time and date at job start Tue Mar 31 2020 10:24:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.33243 * 125.50250 * 2 1
4 4 C 1.30870 * 109.83878 * 180.02562 * 3 2 1
5 5 C 1.50699 * 125.97800 * 179.74028 * 4 3 2
6 6 N 1.34690 * 108.04140 * 359.97438 * 4 3 2
7 7 C 1.40254 * 126.84360 * 179.97438 * 6 4 3
8 8 C 1.38703 * 120.09730 * 49.20070 * 7 6 4
9 9 C 1.38177 * 120.00181 * 179.72611 * 8 7 6
10 10 C 1.38318 * 120.20265 * 0.55401 * 9 8 7
11 11 C 1.38170 * 120.19540 * 359.72340 * 10 9 8
12 12 C 1.38745 * 119.99031 * 359.97438 * 11 10 9
13 13 N 1.39985 * 120.09683 * 179.97438 * 12 11 10
14 14 C 1.34776 * 119.99714 * 34.57699 * 13 12 11
15 15 O 1.21286 * 120.00038 * 355.69050 * 14 13 12
16 16 C 1.50700 * 119.99474 * 175.69774 * 14 13 12
17 17 C 1.53000 * 109.46804 * 179.97438 * 16 14 13
18 18 C 1.50699 * 109.47457 * 179.97438 * 17 16 14
19 19 H 1.08003 * 119.99576 * 0.02562 * 18 17 16
20 20 C 1.37880 * 120.00245 * 180.02562 * 18 17 16
21 21 N 1.31508 * 119.99753 * 359.97438 * 20 18 17
22 22 Si 1.86798 * 119.99705 * 179.97438 * 20 18 17
23 23 H 1.48501 * 109.47047 * 90.00281 * 22 20 18
24 24 H 1.48501 * 109.47020 * 210.00051 * 22 20 18
25 25 H 1.48501 * 109.47444 * 330.00109 * 22 20 18
26 26 N 1.30774 * 125.49983 * 180.02562 * 2 1 3
27 27 H 1.09004 * 109.46509 * 89.97841 * 1 2 3
28 28 H 1.09000 * 109.47102 * 209.97513 * 1 2 3
29 29 H 1.08998 * 109.47130 * 329.97702 * 1 2 3
30 30 H 1.09002 * 109.47939 * 85.07867 * 5 4 3
31 31 H 1.08999 * 109.47298 * 205.08132 * 5 4 3
32 32 H 1.09004 * 109.47270 * 325.07402 * 5 4 3
33 33 H 1.07999 * 119.99866 * 359.97438 * 8 7 6
34 34 H 1.08003 * 119.90110 * 180.28204 * 9 8 7
35 35 H 1.08006 * 119.90323 * 179.74779 * 10 9 8
36 36 H 1.07999 * 120.00021 * 180.02562 * 11 10 9
37 37 H 0.97000 * 119.99759 * 214.56728 * 13 12 11
38 38 H 1.08992 * 109.47218 * 299.99038 * 16 14 13
39 39 H 1.09001 * 109.47235 * 59.99966 * 16 14 13
40 40 H 1.09000 * 109.47489 * 300.00085 * 17 16 14
41 41 H 1.09001 * 109.47562 * 59.99711 * 17 16 14
42 42 H 0.97005 * 119.99486 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2808 1.0847 0.0000
4 6 3.5409 0.7314 -0.0006
5 6 4.7226 1.6666 -0.0063
6 7 3.5968 -0.6144 -0.0003
7 6 4.7531 -1.4081 -0.0013
8 6 5.7712 -1.1551 0.9062
9 6 6.9071 -1.9418 0.9072
10 6 7.0384 -2.9756 -0.0023
11 6 6.0318 -3.2314 -0.9137
12 6 4.8851 -2.4504 -0.9178
13 7 3.8642 -2.7072 -1.8405
14 6 3.6002 -3.9738 -2.2181
15 8 4.2967 -4.8831 -1.8195
16 6 2.4396 -4.2599 -3.1359
17 6 2.3622 -5.7638 -3.4065
18 6 1.2013 -6.0501 -4.3237
19 1 0.5810 -5.2404 -4.6785
20 6 0.9311 -7.3459 -4.7099
21 7 1.6868 -8.3318 -4.2783
22 14 -0.5083 -7.7007 -5.8463
23 1 -0.0516 -7.6386 -7.2580
24 1 -1.0438 -9.0556 -5.5585
25 1 -1.5740 -6.6902 -5.6259
26 7 2.2664 -1.0647 -0.0005
27 1 -0.3632 0.0004 -1.0277
28 1 -0.3633 -0.8902 0.5134
29 1 -0.3633 0.8898 0.5142
30 1 4.9546 1.9655 1.0160
31 1 5.5844 1.1604 -0.4412
32 1 4.4837 2.5504 -0.5979
33 1 5.6743 -0.3456 1.6145
34 1 7.6968 -1.7462 1.6175
35 1 7.9301 -3.5850 0.0002
36 1 6.1375 -4.0396 -1.6221
37 1 3.3468 -1.9736 -2.2080
38 1 1.5142 -3.9270 -2.6660
39 1 2.5810 -3.7285 -4.0770
40 1 3.2877 -6.0965 -3.8765
41 1 2.2211 -6.2956 -2.4655
42 1 1.4965 -9.2434 -4.5498
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000291388920.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:24:49
Heat of formation + Delta-G solvation = 51.057153 kcal
Electronic energy + Delta-G solvation = -25503.961167 eV
Core-core repulsion = 21870.745248 eV
Total energy + Delta-G solvation = -3633.215919 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.148 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-43.46170 -41.63360 -39.75178 -36.04716 -35.70653 -35.50545 -33.75323 -33.19931
-31.60147 -30.76114 -29.98823 -28.37606 -27.66070 -24.77488 -24.20325 -23.04063
-21.73337 -21.60473 -21.26504 -19.33692 -18.84954 -18.32599 -17.74747 -17.10609
-16.80236 -16.52036 -16.04484 -15.79984 -15.53065 -15.23458 -14.89160 -14.74186
-14.56749 -14.26657 -14.23873 -13.95427 -13.63353 -13.42212 -13.31966 -13.28442
-13.01088 -12.88528 -12.84400 -12.52992 -12.52406 -12.03286 -11.72876 -11.57942
-11.36181 -11.30051 -11.14489 -10.86726 -10.60517 -10.59706 -9.79777 -9.25198
-8.22026 -6.36310 -0.26382 0.17062 0.65441 1.15832 1.39679 1.42530
1.47309 1.53626 1.73660 1.92159 2.40337 2.60135 3.01852 3.11067
3.40665 3.65229 3.74551 3.81480 4.04820 4.22814 4.26764 4.30226
4.37457 4.40942 4.49321 4.61887 4.67362 4.69411 4.81260 4.86076
4.91104 5.00238 5.08917 5.13048 5.26922 5.32584 5.42297 5.42516
5.45002 5.53800 5.70246 5.78420 6.02606 6.11904 6.18169 6.79669
6.97624 7.00081 7.33793 8.90622
Molecular weight = 314.15amu
Principal moments of inertia in cm(-1)
A = 0.014045 B = 0.003529 C = 0.002910
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1993.159882 B = 7931.244311 C = 9618.374936
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 C 0.216 3.784
3 N -0.557 5.557
4 C 0.287 3.713
5 C -0.078 4.078
6 N -0.337 5.337
7 C 0.087 3.913
8 C -0.088 4.088
9 C -0.105 4.105
10 C -0.085 4.085
11 C -0.137 4.137
12 C 0.144 3.856
13 N -0.661 5.661
14 C 0.518 3.482
15 O -0.554 6.554
16 C -0.116 4.116
17 C 0.047 3.953
18 C -0.546 4.546
19 H 0.073 0.927
20 C -0.004 4.004
21 N -0.935 5.935
22 Si 0.974 3.026
23 H -0.270 1.270
24 H -0.284 1.284
25 H -0.257 1.257
26 N -0.352 5.352
27 H 0.096 0.904
28 H 0.083 0.917
29 H 0.102 0.898
30 H 0.119 0.881
31 H 0.097 0.903
32 H 0.109 0.891
33 H 0.162 0.838
34 H 0.179 0.821
35 H 0.158 0.842
36 H 0.121 0.879
37 H 0.412 0.588
38 H 0.098 0.902
39 H 0.105 0.895
40 H -0.011 1.011
41 H -0.017 1.017
42 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.395 24.385 11.385 28.504
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C -0.065 4.065
3 N -0.286 5.286
4 C 0.013 3.987
5 C -0.137 4.137
6 N -0.122 5.122
7 C -0.006 4.006
8 C -0.108 4.108
9 C -0.124 4.124
10 C -0.104 4.104
11 C -0.158 4.158
12 C 0.047 3.953
13 N -0.305 5.305
14 C 0.308 3.692
15 O -0.431 6.431
16 C -0.155 4.155
17 C 0.009 3.991
18 C -0.584 4.584
19 H 0.091 0.909
20 C -0.202 4.202
21 N -0.575 5.575
22 Si 0.798 3.202
23 H -0.195 1.195
24 H -0.210 1.210
25 H -0.181 1.181
26 N -0.179 5.179
27 H 0.114 0.886
28 H 0.102 0.898
29 H 0.121 0.879
30 H 0.137 0.863
31 H 0.115 0.885
32 H 0.128 0.872
33 H 0.180 0.820
34 H 0.196 0.804
35 H 0.175 0.825
36 H 0.139 0.861
37 H 0.249 0.751
38 H 0.116 0.884
39 H 0.124 0.876
40 H 0.007 0.993
41 H 0.002 0.998
42 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 9.444 23.105 11.611 27.530
hybrid contribution -0.893 -0.714 -0.837 1.416
sum 8.552 22.392 10.775 26.280
Atomic orbital electron populations
1.20267 0.81761 1.04868 1.04899 1.25057 0.99688 0.85416 0.96363
1.70472 1.00326 1.30635 1.27190 1.25497 0.96296 0.83120 0.93762
1.20741 0.89719 0.96565 1.06631 1.47451 1.04001 1.05387 1.55401
1.17465 0.86685 0.97326 0.99157 1.21252 0.92413 1.01440 0.95712
1.21451 0.97919 0.93772 0.99255 1.21569 0.98283 0.97272 0.93292
1.21344 0.92112 1.00159 1.02151 1.18017 0.89166 0.97060 0.91038
1.43463 1.35031 1.08873 1.43107 1.21508 0.85788 0.81340 0.80530
1.90641 1.50760 1.45629 1.56066 1.21642 0.95129 1.00202 0.98564
1.18662 0.95712 0.89700 0.95014 1.21650 1.13783 0.93644 1.29297
0.90882 1.26112 0.99847 0.96080 0.98133 1.70166 1.40882 1.00245
1.46174 0.85315 0.78694 0.77658 0.78558 1.19519 1.20968 1.18111
1.78349 0.87104 1.23500 1.28949 0.88578 0.89827 0.87933 0.86257
0.88478 0.87218 0.82030 0.80352 0.82452 0.86112 0.75116 0.88379
0.87642 0.99261 0.99824 0.92733
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -1.13 10.51 71.24 0.75 -0.38 16
2 C 0.22 5.77 8.14 138.61 1.13 6.90 16
3 N -0.56 -13.95 11.19 -179.48 -2.01 -15.96 16
4 C 0.29 6.10 7.84 138.13 1.08 7.18 16
5 C -0.08 -0.76 9.37 71.24 0.67 -0.10 16
6 N -0.34 -8.74 3.30 -178.93 -0.59 -9.33 16
7 C 0.09 2.16 5.93 38.19 0.23 2.38 16
8 C -0.09 -1.41 8.61 22.37 0.19 -1.22 16
9 C -0.11 -1.41 10.04 22.27 0.22 -1.18 16
10 C -0.09 -1.64 10.04 22.27 0.22 -1.42 16
11 C -0.14 -3.99 8.70 22.37 0.19 -3.80 16
12 C 0.14 4.39 6.32 38.25 0.24 4.63 16
13 N -0.66 -22.34 4.75 -303.14 -1.44 -23.78 16
14 C 0.52 21.78 7.67 87.66 0.67 22.45 16
15 O -0.55 -27.41 13.40 -3.05 -0.04 -27.46 16
16 C -0.12 -5.01 5.64 29.85 0.17 -4.84 16
17 C 0.05 2.67 4.26 29.85 0.13 2.80 16
18 C -0.55 -31.76 9.11 25.60 0.23 -31.53 16
19 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16
20 C 0.00 -0.23 5.46 84.66 0.46 0.23 16
21 N -0.93 -59.67 13.29 21.45 0.28 -59.39 16
22 Si 0.97 44.88 29.54 68.60 2.03 46.91 16
23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16
24 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16
25 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16
26 N -0.35 -10.90 11.77 -51.30 -0.60 -11.51 16
27 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16
28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16
29 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16
30 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16
31 H 0.10 0.76 7.24 -2.39 -0.02 0.74 16
32 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16
33 H 0.16 1.60 7.64 -2.91 -0.02 1.57 16
34 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16
35 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16
36 H 0.12 4.28 6.19 -2.91 -0.02 4.26 16
37 H 0.41 12.63 8.14 -92.71 -0.75 11.87 16
38 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16
39 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16
40 H -0.01 -0.70 8.10 -2.39 -0.02 -0.72 16
41 H -0.02 -1.08 8.10 -2.39 -0.02 -1.09 16
42 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16
Total: -1.00 -84.12 360.76 4.52 -79.61
By element:
Atomic # 1 Polarization: 18.50 SS G_CDS: 0.29 Total: 18.79 kcal
Atomic # 6 Polarization: -4.49 SS G_CDS: 6.59 Total: 2.11 kcal
Atomic # 7 Polarization: -115.61 SS G_CDS: -4.36 Total: -119.96 kcal
Atomic # 8 Polarization: -27.41 SS G_CDS: -0.04 Total: -27.46 kcal
Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal
Total: -84.12 4.52 -79.61 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000291388920.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 130.666 kcal
(2) G-P(sol) polarization free energy of solvation -84.124 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.542 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.608 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.057 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds