Wall clock time and date at job start Tue Mar 31 2020 10:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33243 * 125.50250 * 2 1 4 4 C 1.30870 * 109.83878 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.97800 * 179.74028 * 4 3 2 6 6 N 1.34690 * 108.04140 * 359.97438 * 4 3 2 7 7 C 1.40254 * 126.84360 * 179.97438 * 6 4 3 8 8 C 1.38703 * 120.09730 * 49.20070 * 7 6 4 9 9 C 1.38177 * 120.00181 * 179.72611 * 8 7 6 10 10 C 1.38318 * 120.20265 * 0.55401 * 9 8 7 11 11 C 1.38170 * 120.19540 * 359.72340 * 10 9 8 12 12 C 1.38745 * 119.99031 * 359.97438 * 11 10 9 13 13 N 1.39985 * 120.09683 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99714 * 34.57699 * 13 12 11 15 15 O 1.21286 * 120.00038 * 355.69050 * 14 13 12 16 16 C 1.50700 * 119.99474 * 175.69774 * 14 13 12 17 17 C 1.53000 * 109.46804 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47457 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99576 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00245 * 180.02562 * 18 17 16 21 21 N 1.31508 * 119.99753 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99705 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47047 * 90.00281 * 22 20 18 24 24 H 1.48501 * 109.47020 * 210.00051 * 22 20 18 25 25 H 1.48501 * 109.47444 * 330.00109 * 22 20 18 26 26 N 1.30774 * 125.49983 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.46509 * 89.97841 * 1 2 3 28 28 H 1.09000 * 109.47102 * 209.97513 * 1 2 3 29 29 H 1.08998 * 109.47130 * 329.97702 * 1 2 3 30 30 H 1.09002 * 109.47939 * 85.07867 * 5 4 3 31 31 H 1.08999 * 109.47298 * 205.08132 * 5 4 3 32 32 H 1.09004 * 109.47270 * 325.07402 * 5 4 3 33 33 H 1.07999 * 119.99866 * 359.97438 * 8 7 6 34 34 H 1.08003 * 119.90110 * 180.28204 * 9 8 7 35 35 H 1.08006 * 119.90323 * 179.74779 * 10 9 8 36 36 H 1.07999 * 120.00021 * 180.02562 * 11 10 9 37 37 H 0.97000 * 119.99759 * 214.56728 * 13 12 11 38 38 H 1.08992 * 109.47218 * 299.99038 * 16 14 13 39 39 H 1.09001 * 109.47235 * 59.99966 * 16 14 13 40 40 H 1.09000 * 109.47489 * 300.00085 * 17 16 14 41 41 H 1.09001 * 109.47562 * 59.99711 * 17 16 14 42 42 H 0.97005 * 119.99486 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2808 1.0847 0.0000 4 6 3.5409 0.7314 -0.0006 5 6 4.7226 1.6666 -0.0063 6 7 3.5968 -0.6144 -0.0003 7 6 4.7531 -1.4081 -0.0013 8 6 5.7712 -1.1551 0.9062 9 6 6.9071 -1.9418 0.9072 10 6 7.0384 -2.9756 -0.0023 11 6 6.0318 -3.2314 -0.9137 12 6 4.8851 -2.4504 -0.9178 13 7 3.8642 -2.7072 -1.8405 14 6 3.6002 -3.9738 -2.2181 15 8 4.2967 -4.8831 -1.8195 16 6 2.4396 -4.2599 -3.1359 17 6 2.3622 -5.7638 -3.4065 18 6 1.2013 -6.0501 -4.3237 19 1 0.5810 -5.2404 -4.6785 20 6 0.9311 -7.3459 -4.7099 21 7 1.6868 -8.3318 -4.2783 22 14 -0.5083 -7.7007 -5.8463 23 1 -0.0516 -7.6386 -7.2580 24 1 -1.0438 -9.0556 -5.5585 25 1 -1.5740 -6.6902 -5.6259 26 7 2.2664 -1.0647 -0.0005 27 1 -0.3632 0.0004 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 4.9546 1.9655 1.0160 31 1 5.5844 1.1604 -0.4412 32 1 4.4837 2.5504 -0.5979 33 1 5.6743 -0.3456 1.6145 34 1 7.6968 -1.7462 1.6175 35 1 7.9301 -3.5850 0.0002 36 1 6.1375 -4.0396 -1.6221 37 1 3.3468 -1.9736 -2.2080 38 1 1.5142 -3.9270 -2.6660 39 1 2.5810 -3.7285 -4.0770 40 1 3.2877 -6.0965 -3.8765 41 1 2.2211 -6.2956 -2.4655 42 1 1.4965 -9.2434 -4.5498 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291388920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:49 Heat of formation + Delta-G solvation = 51.057153 kcal Electronic energy + Delta-G solvation = -25503.961167 eV Core-core repulsion = 21870.745248 eV Total energy + Delta-G solvation = -3633.215919 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.46170 -41.63360 -39.75178 -36.04716 -35.70653 -35.50545 -33.75323 -33.19931 -31.60147 -30.76114 -29.98823 -28.37606 -27.66070 -24.77488 -24.20325 -23.04063 -21.73337 -21.60473 -21.26504 -19.33692 -18.84954 -18.32599 -17.74747 -17.10609 -16.80236 -16.52036 -16.04484 -15.79984 -15.53065 -15.23458 -14.89160 -14.74186 -14.56749 -14.26657 -14.23873 -13.95427 -13.63353 -13.42212 -13.31966 -13.28442 -13.01088 -12.88528 -12.84400 -12.52992 -12.52406 -12.03286 -11.72876 -11.57942 -11.36181 -11.30051 -11.14489 -10.86726 -10.60517 -10.59706 -9.79777 -9.25198 -8.22026 -6.36310 -0.26382 0.17062 0.65441 1.15832 1.39679 1.42530 1.47309 1.53626 1.73660 1.92159 2.40337 2.60135 3.01852 3.11067 3.40665 3.65229 3.74551 3.81480 4.04820 4.22814 4.26764 4.30226 4.37457 4.40942 4.49321 4.61887 4.67362 4.69411 4.81260 4.86076 4.91104 5.00238 5.08917 5.13048 5.26922 5.32584 5.42297 5.42516 5.45002 5.53800 5.70246 5.78420 6.02606 6.11904 6.18169 6.79669 6.97624 7.00081 7.33793 8.90622 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.014045 B = 0.003529 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.159882 B = 7931.244311 C = 9618.374936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.216 3.784 3 N -0.557 5.557 4 C 0.287 3.713 5 C -0.078 4.078 6 N -0.337 5.337 7 C 0.087 3.913 8 C -0.088 4.088 9 C -0.105 4.105 10 C -0.085 4.085 11 C -0.137 4.137 12 C 0.144 3.856 13 N -0.661 5.661 14 C 0.518 3.482 15 O -0.554 6.554 16 C -0.116 4.116 17 C 0.047 3.953 18 C -0.546 4.546 19 H 0.073 0.927 20 C -0.004 4.004 21 N -0.935 5.935 22 Si 0.974 3.026 23 H -0.270 1.270 24 H -0.284 1.284 25 H -0.257 1.257 26 N -0.352 5.352 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.162 0.838 34 H 0.179 0.821 35 H 0.158 0.842 36 H 0.121 0.879 37 H 0.412 0.588 38 H 0.098 0.902 39 H 0.105 0.895 40 H -0.011 1.011 41 H -0.017 1.017 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.395 24.385 11.385 28.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.065 4.065 3 N -0.286 5.286 4 C 0.013 3.987 5 C -0.137 4.137 6 N -0.122 5.122 7 C -0.006 4.006 8 C -0.108 4.108 9 C -0.124 4.124 10 C -0.104 4.104 11 C -0.158 4.158 12 C 0.047 3.953 13 N -0.305 5.305 14 C 0.308 3.692 15 O -0.431 6.431 16 C -0.155 4.155 17 C 0.009 3.991 18 C -0.584 4.584 19 H 0.091 0.909 20 C -0.202 4.202 21 N -0.575 5.575 22 Si 0.798 3.202 23 H -0.195 1.195 24 H -0.210 1.210 25 H -0.181 1.181 26 N -0.179 5.179 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.121 0.879 30 H 0.137 0.863 31 H 0.115 0.885 32 H 0.128 0.872 33 H 0.180 0.820 34 H 0.196 0.804 35 H 0.175 0.825 36 H 0.139 0.861 37 H 0.249 0.751 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.007 0.993 41 H 0.002 0.998 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.444 23.105 11.611 27.530 hybrid contribution -0.893 -0.714 -0.837 1.416 sum 8.552 22.392 10.775 26.280 Atomic orbital electron populations 1.20267 0.81761 1.04868 1.04899 1.25057 0.99688 0.85416 0.96363 1.70472 1.00326 1.30635 1.27190 1.25497 0.96296 0.83120 0.93762 1.20741 0.89719 0.96565 1.06631 1.47451 1.04001 1.05387 1.55401 1.17465 0.86685 0.97326 0.99157 1.21252 0.92413 1.01440 0.95712 1.21451 0.97919 0.93772 0.99255 1.21569 0.98283 0.97272 0.93292 1.21344 0.92112 1.00159 1.02151 1.18017 0.89166 0.97060 0.91038 1.43463 1.35031 1.08873 1.43107 1.21508 0.85788 0.81340 0.80530 1.90641 1.50760 1.45629 1.56066 1.21642 0.95129 1.00202 0.98564 1.18662 0.95712 0.89700 0.95014 1.21650 1.13783 0.93644 1.29297 0.90882 1.26112 0.99847 0.96080 0.98133 1.70166 1.40882 1.00245 1.46174 0.85315 0.78694 0.77658 0.78558 1.19519 1.20968 1.18111 1.78349 0.87104 1.23500 1.28949 0.88578 0.89827 0.87933 0.86257 0.88478 0.87218 0.82030 0.80352 0.82452 0.86112 0.75116 0.88379 0.87642 0.99261 0.99824 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.13 10.51 71.24 0.75 -0.38 16 2 C 0.22 5.77 8.14 138.61 1.13 6.90 16 3 N -0.56 -13.95 11.19 -179.48 -2.01 -15.96 16 4 C 0.29 6.10 7.84 138.13 1.08 7.18 16 5 C -0.08 -0.76 9.37 71.24 0.67 -0.10 16 6 N -0.34 -8.74 3.30 -178.93 -0.59 -9.33 16 7 C 0.09 2.16 5.93 38.19 0.23 2.38 16 8 C -0.09 -1.41 8.61 22.37 0.19 -1.22 16 9 C -0.11 -1.41 10.04 22.27 0.22 -1.18 16 10 C -0.09 -1.64 10.04 22.27 0.22 -1.42 16 11 C -0.14 -3.99 8.70 22.37 0.19 -3.80 16 12 C 0.14 4.39 6.32 38.25 0.24 4.63 16 13 N -0.66 -22.34 4.75 -303.14 -1.44 -23.78 16 14 C 0.52 21.78 7.67 87.66 0.67 22.45 16 15 O -0.55 -27.41 13.40 -3.05 -0.04 -27.46 16 16 C -0.12 -5.01 5.64 29.85 0.17 -4.84 16 17 C 0.05 2.67 4.26 29.85 0.13 2.80 16 18 C -0.55 -31.76 9.11 25.60 0.23 -31.53 16 19 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 20 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 21 N -0.93 -59.67 13.29 21.45 0.28 -59.39 16 22 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 25 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 26 N -0.35 -10.90 11.77 -51.30 -0.60 -11.51 16 27 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.10 0.76 7.24 -2.39 -0.02 0.74 16 32 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.16 1.60 7.64 -2.91 -0.02 1.57 16 34 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 35 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 36 H 0.12 4.28 6.19 -2.91 -0.02 4.26 16 37 H 0.41 12.63 8.14 -92.71 -0.75 11.87 16 38 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 39 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 40 H -0.01 -0.70 8.10 -2.39 -0.02 -0.72 16 41 H -0.02 -1.08 8.10 -2.39 -0.02 -1.09 16 42 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 Total: -1.00 -84.12 360.76 4.52 -79.61 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.29 Total: 18.79 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 6.59 Total: 2.11 kcal Atomic # 7 Polarization: -115.61 SS G_CDS: -4.36 Total: -119.96 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.04 Total: -27.46 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -84.12 4.52 -79.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291388920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.666 kcal (2) G-P(sol) polarization free energy of solvation -84.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds