Wall clock time and date at job start Tue Mar 31 2020 11:39:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52996 * 109.47612 * 2 1
4 4 C 1.52999 * 109.46938 * 239.99565 * 2 1 3
5 5 C 1.50706 * 109.46868 * 120.00101 * 2 1 3
6 6 O 1.21279 * 119.99986 * 10.95217 * 5 2 1
7 7 N 1.34777 * 119.99963 * 190.95257 * 5 2 1
8 8 C 1.47605 * 122.43021 * 355.89338 * 7 5 2
9 9 S 1.84070 * 102.63917 * 204.83012 * 8 7 5
10 10 C 1.83987 * 93.84371 * 326.48538 * 9 8 7
11 11 C 1.45503 * 122.43056 * 175.91167 * 7 5 2
12 12 H 1.08994 * 108.75000 * 58.09741 * 11 7 5
13 13 C 1.50696 * 108.75225 * 299.87576 * 11 7 5
14 14 O 1.21285 * 120.00386 * 357.55012 * 13 11 7
15 15 N 1.34779 * 119.99772 * 177.83379 * 13 11 7
16 16 C 1.46500 * 120.00176 * 179.72392 * 15 13 11
17 17 C 1.52996 * 109.47501 * 179.97438 * 16 15 13
18 18 C 1.50698 * 109.47428 * 180.02562 * 17 16 15
19 19 H 1.08002 * 119.99758 * 359.97438 * 18 17 16
20 20 C 1.37870 * 120.00118 * 179.97438 * 18 17 16
21 21 N 1.31521 * 120.00009 * 0.02562 * 20 18 17
22 22 Si 1.86803 * 120.00302 * 179.97438 * 20 18 17
23 23 H 1.48496 * 109.46756 * 359.97438 * 22 20 18
24 24 H 1.48497 * 109.47090 * 119.99748 * 22 20 18
25 25 H 1.48496 * 109.47187 * 240.00272 * 22 20 18
26 26 H 1.08996 * 109.47053 * 300.00265 * 1 2 3
27 27 H 1.09000 * 109.47153 * 59.99671 * 1 2 3
28 28 H 1.09001 * 109.47362 * 179.97438 * 1 2 3
29 29 H 1.08997 * 109.47620 * 179.97438 * 3 2 1
30 30 H 1.09000 * 109.47130 * 300.00343 * 3 2 1
31 31 H 1.08996 * 109.47128 * 59.99780 * 3 2 1
32 32 H 1.08997 * 109.47776 * 309.14081 * 4 2 1
33 33 H 1.09006 * 109.47042 * 69.13778 * 4 2 1
34 34 H 1.09001 * 109.47236 * 189.13955 * 4 2 1
35 35 H 1.09000 * 110.77596 * 323.11495 * 8 7 5
36 36 H 1.09005 * 110.77800 * 86.34871 * 8 7 5
37 37 H 1.08998 * 111.07735 * 274.32860 * 10 9 8
38 38 H 1.09003 * 110.94250 * 150.41716 * 10 9 8
39 39 H 0.96999 * 120.00030 * 359.71504 * 15 13 11
40 40 H 1.09000 * 109.46881 * 299.99647 * 16 15 13
41 41 H 1.08998 * 109.47358 * 59.99211 * 16 15 13
42 42 H 1.09000 * 109.46945 * 299.99829 * 17 16 15
43 43 H 1.08998 * 109.47278 * 59.99384 * 17 16 15
44 44 H 0.97002 * 119.99738 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0399 -0.7213 -1.2492
5 6 2.0323 -0.7105 1.2305
6 8 1.2622 -1.3410 1.9235
7 7 3.3373 -0.6451 1.5609
8 6 4.3362 0.0314 0.7104
9 16 5.9032 -0.8118 1.1812
10 6 5.3913 -1.0552 2.9315
11 6 3.8638 -1.2367 2.7815
12 1 3.6359 -2.3026 2.7808
13 6 3.1814 -0.5974 3.9632
14 8 2.3764 0.2931 3.7900
15 7 3.4698 -1.0113 5.2130
16 6 2.8109 -0.3857 6.3622
17 6 3.3121 -1.0354 7.6535
18 6 2.6338 -0.3923 8.8356
19 1 1.9173 0.4009 8.6813
20 6 2.9281 -0.8165 10.1140
21 7 3.8010 -1.7821 10.3019
22 14 2.0879 -0.0188 11.5794
23 1 1.1571 1.0355 11.1028
24 1 1.3272 -1.0470 12.3340
25 1 3.1118 0.5896 12.4663
26 1 -0.3633 0.5139 0.8899
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3634 -1.0277 -0.0005
29 1 3.1301 1.4424 0.0005
30 1 1.6768 1.9563 -0.8900
31 1 1.6768 1.9563 0.8899
32 1 1.5495 -1.6910 -1.3346
33 1 1.8160 -0.1220 -2.1317
34 1 3.1177 -0.8649 -1.1714
35 1 4.1149 -0.1253 -0.3453
36 1 4.3823 1.0960 0.9403
37 1 5.6239 -0.1769 3.5337
38 1 5.8524 -1.9491 3.3516
39 1 4.1136 -1.7235 5.3516
40 1 3.0417 0.6795 6.3778
41 1 1.7326 -0.5226 6.2817
42 1 3.0810 -2.1005 7.6377
43 1 4.3905 -0.8988 7.7342
44 1 4.0077 -2.0807 11.2014
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000330864577.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:39:20
Heat of formation + Delta-G solvation = -61.948239 kcal
Electronic energy + Delta-G solvation = -24962.953127 eV
Core-core repulsion = 21427.988127 eV
Total energy + Delta-G solvation = -3534.965000 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 314.145 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-41.00677 -39.09535 -36.32897 -35.96146 -34.86617 -32.97428 -31.64858 -29.41487
-28.08283 -27.73111 -27.07996 -25.32773 -24.44346 -22.33152 -20.98748 -20.22577
-19.22326 -17.61422 -17.46801 -16.72669 -16.39033 -15.62686 -15.30266 -15.24870
-14.95431 -14.86410 -14.46120 -14.35154 -14.05411 -13.94656 -13.26580 -13.14131
-12.82988 -12.75746 -12.43137 -12.36614 -12.31839 -12.10350 -12.00490 -11.88740
-11.27207 -11.22036 -11.18524 -11.05992 -10.84293 -10.64222 -10.36474 -9.90619
-9.76657 -9.53499 -9.29377 -8.86591 -8.58602 -8.38993 -8.23821 -6.11292
-4.14019 1.23913 1.58701 2.33526 2.61982 2.84075 3.27379 3.34916
3.39798 3.57641 3.92188 4.19933 4.39816 4.40417 4.51981 4.55030
4.61721 4.77788 4.90196 5.00904 5.08311 5.21288 5.26008 5.28632
5.32709 5.41769 5.52392 5.64183 5.66547 5.75313 5.90377 5.97374
6.12999 6.29746 6.32255 6.70426 6.84169 6.99223 7.48530 7.58792
7.86114 7.90152 8.03380 8.25252 8.54980 8.91979 9.51041 11.00315
Molecular weight = 314.15amu
Principal moments of inertia in cm(-1)
A = 0.019403 B = 0.003137 C = 0.002825
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1442.736263 B = 8922.513736 C = 9908.665694
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.080 4.080
3 C -0.159 4.159
4 C -0.147 4.147
5 C 0.547 3.453
6 O -0.510 6.510
7 N -0.600 5.600
8 C 0.144 3.856
9 S -0.267 6.267
10 C -0.065 4.065
11 C 0.114 3.886
12 H 0.112 0.888
13 C 0.502 3.498
14 O -0.527 6.527
15 N -0.718 5.718
16 C 0.124 3.876
17 C 0.013 3.987
18 C -0.521 4.521
19 H 0.059 0.941
20 C 0.059 3.941
21 N -0.894 5.894
22 Si 0.896 3.104
23 H -0.271 1.271
24 H -0.283 1.283
25 H -0.283 1.283
26 H 0.064 0.936
27 H 0.062 0.938
28 H 0.064 0.936
29 H 0.070 0.930
30 H 0.068 0.932
31 H 0.068 0.932
32 H 0.065 0.935
33 H 0.072 0.928
34 H 0.063 0.937
35 H 0.127 0.873
36 H 0.102 0.898
37 H 0.110 0.890
38 H 0.132 0.868
39 H 0.397 0.603
40 H 0.056 0.944
41 H 0.056 0.944
42 H 0.023 0.977
43 H 0.023 0.977
44 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.066 2.243 -25.006 25.293
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.083 4.083
3 C -0.217 4.217
4 C -0.204 4.204
5 C 0.334 3.666
6 O -0.383 6.383
7 N -0.336 5.336
8 C -0.089 4.089
9 S -0.040 6.040
10 C -0.214 4.214
11 C 0.005 3.995
12 H 0.129 0.871
13 C 0.283 3.717
14 O -0.403 6.403
15 N -0.368 5.368
16 C 0.002 3.998
17 C -0.024 4.024
18 C -0.560 4.560
19 H 0.078 0.922
20 C -0.143 4.143
21 N -0.533 5.533
22 Si 0.724 3.276
23 H -0.196 1.196
24 H -0.209 1.209
25 H -0.209 1.209
26 H 0.083 0.917
27 H 0.081 0.919
28 H 0.083 0.917
29 H 0.088 0.912
30 H 0.087 0.913
31 H 0.087 0.913
32 H 0.084 0.916
33 H 0.091 0.909
34 H 0.081 0.919
35 H 0.145 0.855
36 H 0.120 0.880
37 H 0.128 0.872
38 H 0.150 0.850
39 H 0.230 0.770
40 H 0.074 0.926
41 H 0.075 0.925
42 H 0.041 0.959
43 H 0.041 0.959
44 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 3.123 2.145 -25.239 25.521
hybrid contribution -0.921 0.313 1.706 1.963
sum 2.203 2.458 -23.533 23.763
Atomic orbital electron populations
1.21667 0.91469 1.03059 1.02252 1.20748 0.98368 0.96329 0.92899
1.22294 1.02085 0.93907 1.03408 1.22048 1.01174 1.01115 0.96106
1.20374 0.79750 0.80147 0.86310 1.90732 1.53965 1.41128 1.52454
1.48081 1.07953 1.57128 1.20460 1.24943 0.86043 0.98601 0.99273
1.88338 1.25840 1.77986 1.11804 1.24512 0.93278 1.08165 0.95436
1.21210 0.92839 1.00291 0.85200 0.87063 1.20479 0.83014 0.83862
0.84317 1.90677 1.33986 1.30483 1.85193 1.46255 1.45060 1.39572
1.05958 1.21733 0.96594 0.96894 0.84572 1.19325 0.97029 0.96458
0.89629 1.21079 1.24553 1.19685 0.90655 0.92230 1.24993 0.95127
0.95013 0.99142 1.69964 1.33387 1.28037 1.21889 0.86458 0.79422
0.79364 0.82352 1.19584 1.20896 1.20921 0.91732 0.91913 0.91685
0.91180 0.91267 0.91337 0.91562 0.90937 0.91866 0.85530 0.87975
0.87199 0.84963 0.76979 0.92594 0.92513 0.95888 0.95919 0.92884
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.31 7.82 37.16 0.29 -1.02 16
2 C -0.08 -0.80 0.75 -155.66 -0.12 -0.92 16
3 C -0.16 -1.34 8.08 37.16 0.30 -1.04 16
4 C -0.15 -1.05 8.27 37.16 0.31 -0.74 16
5 C 0.55 7.66 5.41 -10.98 -0.06 7.60 16
6 O -0.51 -9.41 14.97 -10.67 -0.16 -9.57 16
7 N -0.60 -7.33 2.73 -169.16 -0.46 -7.79 16
8 C 0.14 1.28 5.34 60.45 0.32 1.60 16
9 S -0.27 -2.51 23.43 -107.50 -2.52 -5.03 16
10 C -0.07 -0.63 6.76 37.98 0.26 -0.37 16
11 C 0.11 1.45 2.84 -68.80 -0.20 1.26 16
12 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16
13 C 0.50 8.56 6.41 -10.99 -0.07 8.49 16
14 O -0.53 -11.03 14.86 -10.68 -0.16 -11.19 16
15 N -0.72 -12.35 5.44 -60.30 -0.33 -12.68 16
16 C 0.12 2.65 5.61 -4.04 -0.02 2.63 16
17 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16
18 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16
19 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16
20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16
21 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16
22 Si 0.90 21.45 29.54 -169.99 -5.02 16.42 16
23 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16
24 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16
25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16
27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
28 H 0.06 0.72 7.98 -51.93 -0.41 0.31 16
29 H 0.07 0.50 3.76 -51.93 -0.20 0.30 16
30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
32 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16
33 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16
34 H 0.06 0.40 5.10 -51.93 -0.26 0.14 16
35 H 0.13 0.85 4.24 -51.93 -0.22 0.63 16
36 H 0.10 0.85 6.76 -51.93 -0.35 0.50 16
37 H 0.11 1.10 7.85 -51.93 -0.41 0.69 16
38 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16
39 H 0.40 5.72 8.32 -40.82 -0.34 5.38 16
40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16
41 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16
42 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16
43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16
44 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16
LS Contribution 360.24 15.07 5.43 5.43
Total: -1.00 -34.70 360.24 -8.83 -43.52
By element:
Atomic # 1 Polarization: 8.56 SS G_CDS: -6.81 Total: 1.75 kcal
Atomic # 6 Polarization: 3.97 SS G_CDS: 0.46 Total: 4.43 kcal
Atomic # 7 Polarization: -45.72 SS G_CDS: -0.05 Total: -45.77 kcal
Atomic # 8 Polarization: -20.44 SS G_CDS: -0.32 Total: -20.76 kcal
Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal
Atomic # 16 Polarization: -2.51 SS G_CDS: -2.52 Total: -5.03 kcal
Total LS contribution 5.43 Total: 5.43 kcal
Total: -34.70 -8.83 -43.52 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000330864577.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.425 kcal
(2) G-P(sol) polarization free energy of solvation -34.697 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.121 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.948 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds