Wall clock time and date at job start Tue Mar 31 2020 11:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47612 * 2 1 4 4 C 1.52999 * 109.46938 * 239.99565 * 2 1 3 5 5 C 1.50706 * 109.46868 * 120.00101 * 2 1 3 6 6 O 1.21279 * 119.99986 * 10.95217 * 5 2 1 7 7 N 1.34777 * 119.99963 * 190.95257 * 5 2 1 8 8 C 1.47605 * 122.43021 * 355.89338 * 7 5 2 9 9 S 1.84070 * 102.63917 * 204.83012 * 8 7 5 10 10 C 1.83987 * 93.84371 * 326.48538 * 9 8 7 11 11 C 1.45503 * 122.43056 * 175.91167 * 7 5 2 12 12 H 1.08994 * 108.75000 * 58.09741 * 11 7 5 13 13 C 1.50696 * 108.75225 * 299.87576 * 11 7 5 14 14 O 1.21285 * 120.00386 * 357.55012 * 13 11 7 15 15 N 1.34779 * 119.99772 * 177.83379 * 13 11 7 16 16 C 1.46500 * 120.00176 * 179.72392 * 15 13 11 17 17 C 1.52996 * 109.47501 * 179.97438 * 16 15 13 18 18 C 1.50698 * 109.47428 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99758 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00118 * 179.97438 * 18 17 16 21 21 N 1.31521 * 120.00009 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00302 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46756 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47090 * 119.99748 * 22 20 18 25 25 H 1.48496 * 109.47187 * 240.00272 * 22 20 18 26 26 H 1.08996 * 109.47053 * 300.00265 * 1 2 3 27 27 H 1.09000 * 109.47153 * 59.99671 * 1 2 3 28 28 H 1.09001 * 109.47362 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47620 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47130 * 300.00343 * 3 2 1 31 31 H 1.08996 * 109.47128 * 59.99780 * 3 2 1 32 32 H 1.08997 * 109.47776 * 309.14081 * 4 2 1 33 33 H 1.09006 * 109.47042 * 69.13778 * 4 2 1 34 34 H 1.09001 * 109.47236 * 189.13955 * 4 2 1 35 35 H 1.09000 * 110.77596 * 323.11495 * 8 7 5 36 36 H 1.09005 * 110.77800 * 86.34871 * 8 7 5 37 37 H 1.08998 * 111.07735 * 274.32860 * 10 9 8 38 38 H 1.09003 * 110.94250 * 150.41716 * 10 9 8 39 39 H 0.96999 * 120.00030 * 359.71504 * 15 13 11 40 40 H 1.09000 * 109.46881 * 299.99647 * 16 15 13 41 41 H 1.08998 * 109.47358 * 59.99211 * 16 15 13 42 42 H 1.09000 * 109.46945 * 299.99829 * 17 16 15 43 43 H 1.08998 * 109.47278 * 59.99384 * 17 16 15 44 44 H 0.97002 * 119.99738 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2305 6 8 1.2622 -1.3410 1.9235 7 7 3.3373 -0.6451 1.5609 8 6 4.3362 0.0314 0.7104 9 16 5.9032 -0.8118 1.1812 10 6 5.3913 -1.0552 2.9315 11 6 3.8638 -1.2367 2.7815 12 1 3.6359 -2.3026 2.7808 13 6 3.1814 -0.5974 3.9632 14 8 2.3764 0.2931 3.7900 15 7 3.4698 -1.0113 5.2130 16 6 2.8109 -0.3857 6.3622 17 6 3.3121 -1.0354 7.6535 18 6 2.6338 -0.3923 8.8356 19 1 1.9173 0.4009 8.6813 20 6 2.9281 -0.8165 10.1140 21 7 3.8010 -1.7821 10.3019 22 14 2.0879 -0.0188 11.5794 23 1 1.1571 1.0355 11.1028 24 1 1.3272 -1.0470 12.3340 25 1 3.1118 0.5896 12.4663 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.5495 -1.6910 -1.3346 33 1 1.8160 -0.1220 -2.1317 34 1 3.1177 -0.8649 -1.1714 35 1 4.1149 -0.1253 -0.3453 36 1 4.3823 1.0960 0.9403 37 1 5.6239 -0.1769 3.5337 38 1 5.8524 -1.9491 3.3516 39 1 4.1136 -1.7235 5.3516 40 1 3.0417 0.6795 6.3778 41 1 1.7326 -0.5226 6.2817 42 1 3.0810 -2.1005 7.6377 43 1 4.3905 -0.8988 7.7342 44 1 4.0077 -2.0807 11.2014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330864577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:20 Heat of formation + Delta-G solvation = -61.948239 kcal Electronic energy + Delta-G solvation = -24962.953127 eV Core-core repulsion = 21427.988127 eV Total energy + Delta-G solvation = -3534.965000 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.00677 -39.09535 -36.32897 -35.96146 -34.86617 -32.97428 -31.64858 -29.41487 -28.08283 -27.73111 -27.07996 -25.32773 -24.44346 -22.33152 -20.98748 -20.22577 -19.22326 -17.61422 -17.46801 -16.72669 -16.39033 -15.62686 -15.30266 -15.24870 -14.95431 -14.86410 -14.46120 -14.35154 -14.05411 -13.94656 -13.26580 -13.14131 -12.82988 -12.75746 -12.43137 -12.36614 -12.31839 -12.10350 -12.00490 -11.88740 -11.27207 -11.22036 -11.18524 -11.05992 -10.84293 -10.64222 -10.36474 -9.90619 -9.76657 -9.53499 -9.29377 -8.86591 -8.58602 -8.38993 -8.23821 -6.11292 -4.14019 1.23913 1.58701 2.33526 2.61982 2.84075 3.27379 3.34916 3.39798 3.57641 3.92188 4.19933 4.39816 4.40417 4.51981 4.55030 4.61721 4.77788 4.90196 5.00904 5.08311 5.21288 5.26008 5.28632 5.32709 5.41769 5.52392 5.64183 5.66547 5.75313 5.90377 5.97374 6.12999 6.29746 6.32255 6.70426 6.84169 6.99223 7.48530 7.58792 7.86114 7.90152 8.03380 8.25252 8.54980 8.91979 9.51041 11.00315 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.019403 B = 0.003137 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.736263 B = 8922.513736 C = 9908.665694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.080 4.080 3 C -0.159 4.159 4 C -0.147 4.147 5 C 0.547 3.453 6 O -0.510 6.510 7 N -0.600 5.600 8 C 0.144 3.856 9 S -0.267 6.267 10 C -0.065 4.065 11 C 0.114 3.886 12 H 0.112 0.888 13 C 0.502 3.498 14 O -0.527 6.527 15 N -0.718 5.718 16 C 0.124 3.876 17 C 0.013 3.987 18 C -0.521 4.521 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.896 3.104 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.127 0.873 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.397 0.603 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.066 2.243 -25.006 25.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.083 4.083 3 C -0.217 4.217 4 C -0.204 4.204 5 C 0.334 3.666 6 O -0.383 6.383 7 N -0.336 5.336 8 C -0.089 4.089 9 S -0.040 6.040 10 C -0.214 4.214 11 C 0.005 3.995 12 H 0.129 0.871 13 C 0.283 3.717 14 O -0.403 6.403 15 N -0.368 5.368 16 C 0.002 3.998 17 C -0.024 4.024 18 C -0.560 4.560 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.145 0.855 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.150 0.850 39 H 0.230 0.770 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.123 2.145 -25.239 25.521 hybrid contribution -0.921 0.313 1.706 1.963 sum 2.203 2.458 -23.533 23.763 Atomic orbital electron populations 1.21667 0.91469 1.03059 1.02252 1.20748 0.98368 0.96329 0.92899 1.22294 1.02085 0.93907 1.03408 1.22048 1.01174 1.01115 0.96106 1.20374 0.79750 0.80147 0.86310 1.90732 1.53965 1.41128 1.52454 1.48081 1.07953 1.57128 1.20460 1.24943 0.86043 0.98601 0.99273 1.88338 1.25840 1.77986 1.11804 1.24512 0.93278 1.08165 0.95436 1.21210 0.92839 1.00291 0.85200 0.87063 1.20479 0.83014 0.83862 0.84317 1.90677 1.33986 1.30483 1.85193 1.46255 1.45060 1.39572 1.05958 1.21733 0.96594 0.96894 0.84572 1.19325 0.97029 0.96458 0.89629 1.21079 1.24553 1.19685 0.90655 0.92230 1.24993 0.95127 0.95013 0.99142 1.69964 1.33387 1.28037 1.21889 0.86458 0.79422 0.79364 0.82352 1.19584 1.20896 1.20921 0.91732 0.91913 0.91685 0.91180 0.91267 0.91337 0.91562 0.90937 0.91866 0.85530 0.87975 0.87199 0.84963 0.76979 0.92594 0.92513 0.95888 0.95919 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 7.82 37.16 0.29 -1.02 16 2 C -0.08 -0.80 0.75 -155.66 -0.12 -0.92 16 3 C -0.16 -1.34 8.08 37.16 0.30 -1.04 16 4 C -0.15 -1.05 8.27 37.16 0.31 -0.74 16 5 C 0.55 7.66 5.41 -10.98 -0.06 7.60 16 6 O -0.51 -9.41 14.97 -10.67 -0.16 -9.57 16 7 N -0.60 -7.33 2.73 -169.16 -0.46 -7.79 16 8 C 0.14 1.28 5.34 60.45 0.32 1.60 16 9 S -0.27 -2.51 23.43 -107.50 -2.52 -5.03 16 10 C -0.07 -0.63 6.76 37.98 0.26 -0.37 16 11 C 0.11 1.45 2.84 -68.80 -0.20 1.26 16 12 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 13 C 0.50 8.56 6.41 -10.99 -0.07 8.49 16 14 O -0.53 -11.03 14.86 -10.68 -0.16 -11.19 16 15 N -0.72 -12.35 5.44 -60.30 -0.33 -12.68 16 16 C 0.12 2.65 5.61 -4.04 -0.02 2.63 16 17 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 18 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 19 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 22 Si 0.90 21.45 29.54 -169.99 -5.02 16.42 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.72 7.98 -51.93 -0.41 0.31 16 29 H 0.07 0.50 3.76 -51.93 -0.20 0.30 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 33 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 34 H 0.06 0.40 5.10 -51.93 -0.26 0.14 16 35 H 0.13 0.85 4.24 -51.93 -0.22 0.63 16 36 H 0.10 0.85 6.76 -51.93 -0.35 0.50 16 37 H 0.11 1.10 7.85 -51.93 -0.41 0.69 16 38 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.40 5.72 8.32 -40.82 -0.34 5.38 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 360.24 15.07 5.43 5.43 Total: -1.00 -34.70 360.24 -8.83 -43.52 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.81 Total: 1.75 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 0.46 Total: 4.43 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.05 Total: -45.77 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.32 Total: -20.76 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -2.52 Total: -5.03 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.70 -8.83 -43.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330864577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.425 kcal (2) G-P(sol) polarization free energy of solvation -34.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds