Wall clock time and date at job start Tue Mar 31 2020 11:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47612 * 2 1 4 4 C 1.52999 * 109.46938 * 239.99565 * 2 1 3 5 5 C 1.50706 * 109.46868 * 120.00101 * 2 1 3 6 6 O 1.21279 * 119.99986 * 10.95217 * 5 2 1 7 7 N 1.34777 * 119.99963 * 190.95257 * 5 2 1 8 8 C 1.47605 * 122.43021 * 355.89338 * 7 5 2 9 9 S 1.84070 * 102.63917 * 204.83012 * 8 7 5 10 10 C 1.83987 * 93.84371 * 326.48538 * 9 8 7 11 11 C 1.45503 * 122.43056 * 175.91167 * 7 5 2 12 12 H 1.08994 * 108.75000 * 58.09741 * 11 7 5 13 13 C 1.50696 * 108.75225 * 299.87576 * 11 7 5 14 14 O 1.21285 * 120.00386 * 357.55012 * 13 11 7 15 15 N 1.34779 * 119.99772 * 177.83379 * 13 11 7 16 16 C 1.46500 * 120.00176 * 179.72392 * 15 13 11 17 17 C 1.52996 * 109.47501 * 179.97438 * 16 15 13 18 18 C 1.50698 * 109.47428 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99758 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00118 * 179.97438 * 18 17 16 21 21 N 1.31521 * 120.00009 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00302 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46756 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47090 * 119.99748 * 22 20 18 25 25 H 1.48496 * 109.47187 * 240.00272 * 22 20 18 26 26 H 1.08996 * 109.47053 * 300.00265 * 1 2 3 27 27 H 1.09000 * 109.47153 * 59.99671 * 1 2 3 28 28 H 1.09001 * 109.47362 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47620 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47130 * 300.00343 * 3 2 1 31 31 H 1.08996 * 109.47128 * 59.99780 * 3 2 1 32 32 H 1.08997 * 109.47776 * 309.14081 * 4 2 1 33 33 H 1.09006 * 109.47042 * 69.13778 * 4 2 1 34 34 H 1.09001 * 109.47236 * 189.13955 * 4 2 1 35 35 H 1.09000 * 110.77596 * 323.11495 * 8 7 5 36 36 H 1.09005 * 110.77800 * 86.34871 * 8 7 5 37 37 H 1.08998 * 111.07735 * 274.32860 * 10 9 8 38 38 H 1.09003 * 110.94250 * 150.41716 * 10 9 8 39 39 H 0.96999 * 120.00030 * 359.71504 * 15 13 11 40 40 H 1.09000 * 109.46881 * 299.99647 * 16 15 13 41 41 H 1.08998 * 109.47358 * 59.99211 * 16 15 13 42 42 H 1.09000 * 109.46945 * 299.99829 * 17 16 15 43 43 H 1.08998 * 109.47278 * 59.99384 * 17 16 15 44 44 H 0.97002 * 119.99738 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2305 6 8 1.2622 -1.3410 1.9235 7 7 3.3373 -0.6451 1.5609 8 6 4.3362 0.0314 0.7104 9 16 5.9032 -0.8118 1.1812 10 6 5.3913 -1.0552 2.9315 11 6 3.8638 -1.2367 2.7815 12 1 3.6359 -2.3026 2.7808 13 6 3.1814 -0.5974 3.9632 14 8 2.3764 0.2931 3.7900 15 7 3.4698 -1.0113 5.2130 16 6 2.8109 -0.3857 6.3622 17 6 3.3121 -1.0354 7.6535 18 6 2.6338 -0.3923 8.8356 19 1 1.9173 0.4009 8.6813 20 6 2.9281 -0.8165 10.1140 21 7 3.8010 -1.7821 10.3019 22 14 2.0879 -0.0188 11.5794 23 1 1.1571 1.0355 11.1028 24 1 1.3272 -1.0470 12.3340 25 1 3.1118 0.5896 12.4663 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.5495 -1.6910 -1.3346 33 1 1.8160 -0.1220 -2.1317 34 1 3.1177 -0.8649 -1.1714 35 1 4.1149 -0.1253 -0.3453 36 1 4.3823 1.0960 0.9403 37 1 5.6239 -0.1769 3.5337 38 1 5.8524 -1.9491 3.3516 39 1 4.1136 -1.7235 5.3516 40 1 3.0417 0.6795 6.3778 41 1 1.7326 -0.5226 6.2817 42 1 3.0810 -2.1005 7.6377 43 1 4.3905 -0.8988 7.7342 44 1 4.0077 -2.0807 11.2014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330864577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:20 Heat of formation + Delta-G solvation = -85.206618 kcal Electronic energy + Delta-G solvation = -24963.961686 eV Core-core repulsion = 21427.988127 eV Total energy + Delta-G solvation = -3535.973559 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.07895 -40.41088 -37.44456 -36.92107 -36.52618 -34.91425 -32.83911 -31.14685 -28.91799 -28.32793 -27.90978 -26.97374 -25.68914 -23.64452 -22.68654 -21.40255 -20.27685 -18.85157 -18.57225 -18.31268 -17.63318 -16.72709 -16.68847 -16.51715 -16.38588 -16.02504 -15.71292 -15.39212 -15.20849 -14.85012 -14.65501 -14.32672 -14.27310 -13.97304 -13.52914 -13.26179 -13.16301 -13.08264 -12.99586 -12.93625 -12.87926 -12.60083 -12.56183 -12.28619 -12.14363 -11.96298 -11.70581 -11.61676 -11.45090 -11.01969 -10.68146 -10.63462 -10.11761 -9.97060 -8.96945 -8.27003 -6.37375 0.48832 0.79430 1.31942 1.38564 1.39954 1.48130 1.52792 1.66594 2.21497 2.41902 3.00989 3.07726 3.33398 3.52290 3.70844 3.83184 3.84770 3.89981 4.10558 4.19309 4.32444 4.36804 4.42626 4.45248 4.64478 4.67980 4.75838 4.79151 4.85495 4.90747 4.93673 5.00112 5.17232 5.20888 5.29203 5.33536 5.43827 5.54317 5.74988 6.01913 6.12920 6.49212 6.75209 6.98535 7.16262 7.31975 8.84886 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.019403 B = 0.003137 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.736263 B = 8922.513736 C = 9908.665694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.079 4.079 3 C -0.155 4.155 4 C -0.141 4.141 5 C 0.536 3.464 6 O -0.568 6.568 7 N -0.601 5.601 8 C 0.139 3.861 9 S -0.253 6.253 10 C -0.062 4.062 11 C 0.120 3.880 12 H 0.116 0.884 13 C 0.499 3.501 14 O -0.569 6.569 15 N -0.711 5.711 16 C 0.145 3.855 17 C 0.025 3.975 18 C -0.548 4.548 19 H 0.055 0.945 20 C 0.009 3.991 21 N -0.924 5.924 22 Si 0.964 3.036 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.274 1.274 26 H 0.032 0.968 27 H 0.095 0.905 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.037 0.963 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.155 0.845 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.159 0.841 39 H 0.412 0.588 40 H 0.048 0.952 41 H 0.035 0.965 42 H 0.007 0.993 43 H 0.015 0.985 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.287 2.846 -26.921 27.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.082 4.082 3 C -0.212 4.212 4 C -0.198 4.198 5 C 0.325 3.675 6 O -0.445 6.445 7 N -0.336 5.336 8 C -0.092 4.092 9 S -0.026 6.026 10 C -0.211 4.211 11 C 0.010 3.990 12 H 0.134 0.866 13 C 0.283 3.717 14 O -0.448 6.448 15 N -0.363 5.363 16 C 0.021 3.979 17 C -0.012 4.012 18 C -0.587 4.587 19 H 0.073 0.927 20 C -0.190 4.190 21 N -0.564 5.564 22 Si 0.788 3.212 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.199 1.199 26 H 0.052 0.948 27 H 0.114 0.886 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.172 0.828 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.176 0.824 39 H 0.248 0.752 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.025 0.975 43 H 0.034 0.966 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.405 2.744 -27.189 27.680 hybrid contribution -1.294 0.119 2.272 2.617 sum 3.111 2.864 -24.917 25.273 Atomic orbital electron populations 1.21669 0.92210 1.02167 1.02262 1.20862 0.97850 0.97193 0.92335 1.22295 1.03033 0.92535 1.03371 1.22041 1.01515 1.00899 0.95311 1.21290 0.79812 0.79388 0.86992 1.90696 1.55516 1.43716 1.54547 1.48218 1.08272 1.56761 1.20365 1.25246 0.84963 0.98786 1.00214 1.88345 1.25547 1.77956 1.10776 1.24542 0.90790 1.09446 0.96322 1.21227 0.94397 0.99874 0.83506 0.86613 1.21289 0.82284 0.83111 0.84998 1.90657 1.35780 1.32470 1.85847 1.46034 1.45142 1.39858 1.05274 1.21182 0.95411 0.96383 0.84885 1.19118 0.96267 0.95395 0.90465 1.21469 1.24981 1.20045 0.92167 0.92667 1.25840 0.95687 0.95481 1.01983 1.70054 1.34394 1.29048 1.22857 0.85414 0.78526 0.78519 0.78703 1.19210 1.20225 1.19919 0.94841 0.88625 0.93082 0.89634 0.88233 0.94396 0.92267 0.87933 0.90833 0.82818 0.87058 0.87434 0.82358 0.75197 0.93338 0.94694 0.97469 0.96618 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 7.82 71.98 0.56 -2.03 16 2 C -0.08 -1.49 0.75 -52.93 -0.04 -1.53 16 3 C -0.15 -2.30 8.08 71.98 0.58 -1.72 16 4 C -0.14 -1.58 8.27 71.98 0.60 -0.98 16 5 C 0.54 15.12 5.41 87.66 0.47 15.59 16 6 O -0.57 -22.00 14.97 12.49 0.19 -21.81 16 7 N -0.60 -14.18 2.73 -807.48 -2.20 -16.39 16 8 C 0.14 2.12 5.34 127.56 0.68 2.80 16 9 S -0.25 -4.08 23.43 -56.49 -1.32 -5.41 16 10 C -0.06 -1.09 6.76 72.51 0.49 -0.60 16 11 C 0.12 2.98 2.84 44.96 0.13 3.11 16 12 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 13 C 0.50 17.39 6.41 87.66 0.56 17.96 16 14 O -0.57 -24.73 14.86 12.47 0.19 -24.55 16 15 N -0.71 -25.00 5.44 -463.07 -2.52 -27.52 16 16 C 0.15 6.44 5.61 86.38 0.48 6.92 16 17 C 0.03 1.27 5.09 29.85 0.15 1.42 16 18 C -0.55 -31.07 9.11 25.60 0.23 -30.84 16 19 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 20 C 0.01 0.51 5.46 84.65 0.46 0.97 16 21 N -0.92 -54.14 13.29 21.45 0.28 -53.85 16 22 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 H 0.03 0.87 8.14 -2.39 -0.02 0.86 16 27 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.17 7.98 -2.39 -0.02 1.15 16 29 H 0.09 0.97 3.76 -2.39 -0.01 0.96 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 33 H 0.10 0.58 8.12 -2.38 -0.02 0.56 16 34 H 0.07 0.66 5.10 -2.39 -0.01 0.65 16 35 H 0.15 1.48 4.24 -2.39 -0.01 1.47 16 36 H 0.11 1.56 6.76 -2.38 -0.02 1.54 16 37 H 0.11 1.99 7.85 -2.39 -0.02 1.97 16 38 H 0.16 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.41 11.90 8.32 -92.71 -0.77 11.13 16 40 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -78.23 360.24 2.24 -75.98 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.24 Total: 16.37 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 5.37 Total: 11.08 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -4.44 Total: -97.76 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: 0.37 Total: -46.36 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -4.08 SS G_CDS: -1.32 Total: -5.41 kcal Total: -78.23 2.24 -75.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330864577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.224 kcal (2) G-P(sol) polarization free energy of solvation -78.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds