Wall clock time and date at job start Tue Mar 31 2020 11:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46755 * 2 1 4 4 C 1.52997 * 109.46962 * 240.00188 * 2 1 3 5 5 C 1.53002 * 109.47115 * 119.99766 * 2 1 3 6 6 C 1.50704 * 109.46721 * 60.00198 * 5 2 1 7 7 O 1.21279 * 120.00243 * 359.97438 * 6 5 2 8 8 N 1.34774 * 119.99766 * 180.02562 * 6 5 2 9 9 C 1.47605 * 122.42929 * 359.97265 * 8 6 5 10 10 S 1.84072 * 102.63830 * 204.83244 * 9 8 6 11 11 C 1.83985 * 93.84880 * 326.49046 * 10 9 8 12 12 C 1.45498 * 122.43141 * 180.02562 * 8 6 5 13 13 H 1.09002 * 108.75577 * 58.09072 * 12 8 6 14 14 C 1.50703 * 108.75221 * 299.86716 * 12 8 6 15 15 O 1.21278 * 119.99985 * 357.55863 * 14 12 8 16 16 N 1.34779 * 119.99944 * 177.55575 * 14 12 8 17 17 C 1.46499 * 119.99872 * 180.02562 * 16 14 12 18 18 C 1.50701 * 109.46992 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47432 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46890 * 120.00210 * 22 20 18 25 25 H 1.48501 * 109.47062 * 240.00257 * 22 20 18 26 26 H 1.09003 * 109.47250 * 300.00095 * 1 2 3 27 27 H 1.09001 * 109.47373 * 60.00239 * 1 2 3 28 28 H 1.09002 * 109.47069 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46651 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46985 * 299.99999 * 3 2 1 31 31 H 1.08993 * 109.47229 * 60.00106 * 3 2 1 32 32 H 1.09002 * 109.46946 * 299.99729 * 4 2 1 33 33 H 1.09001 * 109.47429 * 60.00162 * 4 2 1 34 34 H 1.09000 * 109.47074 * 180.02562 * 4 2 1 35 35 H 1.09003 * 109.47175 * 300.00185 * 5 2 1 36 36 H 1.08996 * 109.46612 * 179.97438 * 5 2 1 37 37 H 1.08998 * 110.77549 * 323.12103 * 9 8 6 38 38 H 1.09007 * 110.77582 * 86.54925 * 9 8 6 39 39 H 1.09003 * 111.06993 * 274.33003 * 11 10 9 40 40 H 1.08999 * 110.94412 * 150.41579 * 11 10 9 41 41 H 0.97000 * 119.99708 * 359.97438 * 16 14 12 42 42 H 1.09002 * 109.47391 * 59.99686 * 17 16 14 43 43 H 1.09001 * 109.46813 * 299.99742 * 17 16 14 44 44 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2493 6 6 1.5377 -2.1421 1.2492 7 8 0.8401 -2.5386 0.3399 8 7 1.8628 -2.9718 2.2603 9 6 2.7073 -2.5457 3.3935 10 16 3.4270 -4.1353 3.9794 11 6 1.9280 -5.1137 3.5541 12 6 1.4078 -4.3527 2.3135 13 1 1.7496 -4.8692 1.4165 14 6 -0.0990 -4.3659 2.3341 15 8 -0.7144 -3.3210 2.3514 16 7 -0.7628 -5.5389 2.3331 17 6 -2.2276 -5.5517 2.3526 18 6 -2.7176 -6.9768 2.3466 19 1 -2.0088 -7.7915 2.3304 20 6 -4.0709 -7.2405 2.3629 21 7 -4.9339 -6.2485 2.3831 22 14 -4.6782 -9.0070 2.3562 23 1 -3.5153 -9.9303 2.3330 24 1 -5.4846 -9.2578 3.5778 25 1 -5.5176 -9.2373 1.1530 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1393 34 1 3.1300 -0.7216 -1.2490 35 1 1.6767 -0.2074 2.1393 36 1 3.1300 -0.7216 1.2490 37 1 3.4912 -1.8669 3.0576 38 1 2.1027 -2.0840 4.1742 39 1 1.1995 -5.0866 4.3645 40 1 2.1918 -6.1406 3.3011 41 1 -0.2706 -6.3746 2.3189 42 1 -2.6072 -5.0336 1.4719 43 1 -2.5834 -5.0485 3.2517 44 1 -5.8860 -6.4340 2.3942 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331214603.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:22 Heat of formation + Delta-G solvation = -71.265091 kcal Electronic energy + Delta-G solvation = -25145.581922 eV Core-core repulsion = 21610.212913 eV Total energy + Delta-G solvation = -3535.369009 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.62833 -38.83073 -36.81858 -35.66069 -34.22170 -32.58922 -31.55419 -28.37315 -27.56886 -27.21632 -27.10194 -27.05771 -24.09692 -22.52464 -20.60182 -19.36957 -18.68908 -17.79274 -17.33575 -16.78499 -16.25088 -15.30072 -15.25946 -15.05320 -14.76385 -14.44304 -14.39829 -14.23133 -13.95783 -13.74698 -13.41295 -12.78814 -12.75861 -12.48183 -12.31811 -12.13089 -12.11981 -11.98714 -11.72770 -11.60372 -11.25481 -11.06096 -10.97236 -10.93204 -10.84544 -10.75437 -10.64710 -10.32733 -9.47167 -9.40089 -9.28236 -8.76064 -8.61472 -8.12568 -7.92270 -6.18155 -4.25290 1.37184 1.72338 2.53146 2.79990 3.19970 3.22585 3.29664 3.32492 3.96512 4.17372 4.33744 4.52051 4.60961 4.67359 4.76595 4.82247 5.00222 5.08082 5.18215 5.22418 5.35772 5.38480 5.43106 5.46629 5.52554 5.58456 5.76515 5.86918 5.93652 6.04879 6.13047 6.16922 6.25065 6.52192 6.72646 7.20484 7.27748 7.37633 7.50044 7.63001 7.94678 8.24897 8.55811 8.74823 9.02719 9.41233 10.92036 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.014170 B = 0.003826 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.566103 B = 7315.994531 C = 8846.211793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.051 4.051 3 C -0.140 4.140 4 C -0.153 4.153 5 C -0.126 4.126 6 C 0.536 3.464 7 O -0.498 6.498 8 N -0.603 5.603 9 C 0.156 3.844 10 S -0.268 6.268 11 C -0.063 4.063 12 C 0.114 3.886 13 H 0.108 0.892 14 C 0.495 3.505 15 O -0.530 6.530 16 N -0.709 5.709 17 C 0.253 3.747 18 C -0.543 4.543 19 H 0.064 0.936 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.050 0.950 34 H 0.044 0.956 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.130 0.870 41 H 0.389 0.611 42 H 0.027 0.973 43 H 0.026 0.974 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.063 9.762 0.247 21.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.051 4.051 3 C -0.198 4.198 4 C -0.210 4.210 5 C -0.166 4.166 6 C 0.324 3.676 7 O -0.371 6.371 8 N -0.340 5.340 9 C -0.078 4.078 10 S -0.041 6.041 11 C -0.212 4.212 12 C 0.004 3.996 13 H 0.125 0.875 14 C 0.276 3.724 15 O -0.407 6.407 16 N -0.358 5.358 17 C 0.132 3.868 18 C -0.581 4.581 19 H 0.082 0.918 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.134 0.866 38 H 0.115 0.885 39 H 0.128 0.872 40 H 0.148 0.852 41 H 0.222 0.778 42 H 0.045 0.955 43 H 0.044 0.956 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.094 10.073 0.232 21.589 hybrid contribution -1.241 -1.021 -0.263 1.628 sum 17.853 9.052 -0.031 20.017 Atomic orbital electron populations 1.22113 0.93517 1.04875 1.00641 1.20281 0.96835 0.94270 0.93758 1.21889 1.00533 0.95429 1.01929 1.22108 0.99627 1.03035 0.96241 1.21787 1.01702 0.92144 1.00939 1.20400 0.79605 0.87056 0.80562 1.90634 1.35344 1.76302 1.34855 1.48200 1.51944 1.10810 1.23021 1.24222 0.96078 0.96213 0.91299 1.88223 1.24762 1.06885 1.84245 1.24519 0.96024 1.01735 0.98879 1.21225 0.94549 0.83947 0.99875 0.87463 1.20366 0.88470 0.85218 0.78314 1.90666 1.68653 1.31849 1.49555 1.46399 1.10492 1.06385 1.72490 1.19103 0.72539 0.97413 0.97721 1.21244 0.92233 0.91437 1.53211 0.91833 1.24952 0.96554 0.97818 0.94677 1.69986 1.02249 1.31097 1.48860 0.86364 0.78890 0.83906 0.77766 1.19607 1.20806 1.20773 0.93491 0.93267 0.89194 0.92869 0.92378 0.92695 0.89765 0.93051 0.93720 0.88876 0.89216 0.86648 0.88509 0.87229 0.85231 0.77846 0.95476 0.95621 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.18 37.16 0.30 -1.86 16 2 C -0.05 -0.58 0.77 -154.50 -0.12 -0.70 16 3 C -0.14 -1.23 8.47 37.16 0.31 -0.91 16 4 C -0.15 -1.80 8.18 37.16 0.30 -1.50 16 5 C -0.13 -1.34 3.56 -27.88 -0.10 -1.44 16 6 C 0.54 7.87 6.17 -10.98 -0.07 7.80 16 7 O -0.50 -9.23 10.09 -12.90 -0.13 -9.36 16 8 N -0.60 -8.09 2.75 -169.15 -0.46 -8.56 16 9 C 0.16 1.54 7.21 60.45 0.44 1.98 16 10 S -0.27 -2.81 23.43 -107.50 -2.52 -5.33 16 11 C -0.06 -0.70 6.77 37.98 0.26 -0.44 16 12 C 0.11 1.63 2.86 -68.80 -0.20 1.43 16 13 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 14 C 0.50 9.75 6.37 -10.98 -0.07 9.68 16 15 O -0.53 -12.67 14.73 -12.89 -0.19 -12.86 16 16 N -0.71 -14.58 5.43 -61.47 -0.33 -14.92 16 17 C 0.25 6.67 5.43 -5.19 -0.03 6.65 16 18 C -0.54 -14.60 9.28 -34.44 -0.32 -14.92 16 19 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 21 N -0.88 -26.10 13.29 55.43 0.74 -25.37 16 22 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 1.62 5.51 -51.93 -0.29 1.34 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 1.23 5.51 -51.93 -0.29 0.94 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 0.72 7.63 -51.93 -0.40 0.32 16 37 H 0.12 0.81 7.13 -51.93 -0.37 0.44 16 38 H 0.10 0.92 8.14 -51.92 -0.42 0.50 16 39 H 0.11 1.31 7.85 -51.93 -0.41 0.90 16 40 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.39 6.73 8.17 -40.82 -0.33 6.39 16 42 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -33.88 362.83 -8.95 -42.82 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.11 Total: 4.91 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 0.62 Total: 7.42 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.06 Total: -48.84 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.32 Total: -22.22 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -2.81 SS G_CDS: -2.52 Total: -5.33 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.88 -8.95 -42.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331214603.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.443 kcal (2) G-P(sol) polarization free energy of solvation -33.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds