Wall clock time and date at job start Tue Mar 31 2020 11:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46755 * 2 1 4 4 C 1.52997 * 109.46962 * 240.00188 * 2 1 3 5 5 C 1.53002 * 109.47115 * 119.99766 * 2 1 3 6 6 C 1.50704 * 109.46721 * 60.00198 * 5 2 1 7 7 O 1.21279 * 120.00243 * 359.97438 * 6 5 2 8 8 N 1.34774 * 119.99766 * 180.02562 * 6 5 2 9 9 C 1.47605 * 122.42929 * 359.97265 * 8 6 5 10 10 S 1.84072 * 102.63830 * 204.83244 * 9 8 6 11 11 C 1.83985 * 93.84880 * 326.49046 * 10 9 8 12 12 C 1.45498 * 122.43141 * 180.02562 * 8 6 5 13 13 H 1.09002 * 108.75577 * 58.09072 * 12 8 6 14 14 C 1.50703 * 108.75221 * 299.86716 * 12 8 6 15 15 O 1.21278 * 119.99985 * 357.55863 * 14 12 8 16 16 N 1.34779 * 119.99944 * 177.55575 * 14 12 8 17 17 C 1.46499 * 119.99872 * 180.02562 * 16 14 12 18 18 C 1.50701 * 109.46992 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47432 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46890 * 120.00210 * 22 20 18 25 25 H 1.48501 * 109.47062 * 240.00257 * 22 20 18 26 26 H 1.09003 * 109.47250 * 300.00095 * 1 2 3 27 27 H 1.09001 * 109.47373 * 60.00239 * 1 2 3 28 28 H 1.09002 * 109.47069 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46651 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46985 * 299.99999 * 3 2 1 31 31 H 1.08993 * 109.47229 * 60.00106 * 3 2 1 32 32 H 1.09002 * 109.46946 * 299.99729 * 4 2 1 33 33 H 1.09001 * 109.47429 * 60.00162 * 4 2 1 34 34 H 1.09000 * 109.47074 * 180.02562 * 4 2 1 35 35 H 1.09003 * 109.47175 * 300.00185 * 5 2 1 36 36 H 1.08996 * 109.46612 * 179.97438 * 5 2 1 37 37 H 1.08998 * 110.77549 * 323.12103 * 9 8 6 38 38 H 1.09007 * 110.77582 * 86.54925 * 9 8 6 39 39 H 1.09003 * 111.06993 * 274.33003 * 11 10 9 40 40 H 1.08999 * 110.94412 * 150.41579 * 11 10 9 41 41 H 0.97000 * 119.99708 * 359.97438 * 16 14 12 42 42 H 1.09002 * 109.47391 * 59.99686 * 17 16 14 43 43 H 1.09001 * 109.46813 * 299.99742 * 17 16 14 44 44 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2493 6 6 1.5377 -2.1421 1.2492 7 8 0.8401 -2.5386 0.3399 8 7 1.8628 -2.9718 2.2603 9 6 2.7073 -2.5457 3.3935 10 16 3.4270 -4.1353 3.9794 11 6 1.9280 -5.1137 3.5541 12 6 1.4078 -4.3527 2.3135 13 1 1.7496 -4.8692 1.4165 14 6 -0.0990 -4.3659 2.3341 15 8 -0.7144 -3.3210 2.3514 16 7 -0.7628 -5.5389 2.3331 17 6 -2.2276 -5.5517 2.3526 18 6 -2.7176 -6.9768 2.3466 19 1 -2.0088 -7.7915 2.3304 20 6 -4.0709 -7.2405 2.3629 21 7 -4.9339 -6.2485 2.3831 22 14 -4.6782 -9.0070 2.3562 23 1 -3.5153 -9.9303 2.3330 24 1 -5.4846 -9.2578 3.5778 25 1 -5.5176 -9.2373 1.1530 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1393 34 1 3.1300 -0.7216 -1.2490 35 1 1.6767 -0.2074 2.1393 36 1 3.1300 -0.7216 1.2490 37 1 3.4912 -1.8669 3.0576 38 1 2.1027 -2.0840 4.1742 39 1 1.1995 -5.0866 4.3645 40 1 2.1918 -6.1406 3.3011 41 1 -0.2706 -6.3746 2.3189 42 1 -2.6072 -5.0336 1.4719 43 1 -2.5834 -5.0485 3.2517 44 1 -5.8860 -6.4340 2.3942 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331214603.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:22 Heat of formation + Delta-G solvation = -94.179890 kcal Electronic energy + Delta-G solvation = -25146.575582 eV Core-core repulsion = 21610.212913 eV Total energy + Delta-G solvation = -3536.362669 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.82434 -40.26560 -37.94565 -36.77270 -36.16190 -34.48928 -32.82004 -29.55191 -28.98735 -28.34833 -28.12981 -27.97561 -25.56691 -24.20860 -22.02948 -20.78343 -19.65960 -19.20572 -18.46026 -18.01375 -17.80819 -16.94581 -16.55640 -16.38453 -16.14995 -15.78308 -15.40696 -15.35291 -15.14140 -14.82846 -14.68483 -14.35515 -14.03618 -13.90676 -13.67915 -13.31306 -13.12055 -12.96172 -12.91556 -12.87934 -12.75655 -12.66637 -12.30462 -12.23551 -12.07553 -11.86668 -11.63842 -11.54875 -11.48485 -10.85280 -10.83912 -10.47646 -9.90789 -9.81689 -8.93602 -8.31478 -6.48524 0.54178 0.84343 1.41077 1.43038 1.46389 1.56713 1.64278 1.79018 2.30770 2.53954 3.03456 3.11405 3.55190 3.65897 3.74782 3.88989 3.95506 4.05466 4.21303 4.25767 4.36848 4.45271 4.56419 4.60714 4.65096 4.82043 4.85704 4.96394 4.97968 5.07559 5.11465 5.16843 5.19481 5.24353 5.38319 5.44368 5.53157 5.61668 5.64842 5.81322 6.16894 6.62223 6.81799 7.17689 7.21377 7.42254 8.81049 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.014170 B = 0.003826 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.566103 B = 7315.994531 C = 8846.211793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.051 4.051 3 C -0.133 4.133 4 C -0.149 4.149 5 C -0.120 4.120 6 C 0.523 3.477 7 O -0.546 6.546 8 N -0.608 5.608 9 C 0.151 3.849 10 S -0.249 6.249 11 C -0.061 4.061 12 C 0.125 3.875 13 H 0.116 0.884 14 C 0.491 3.509 15 O -0.578 6.578 16 N -0.703 5.703 17 C 0.273 3.727 18 C -0.554 4.554 19 H 0.087 0.913 20 C 0.003 3.997 21 N -0.932 5.932 22 Si 0.986 3.014 23 H -0.250 1.250 24 H -0.278 1.278 25 H -0.281 1.281 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.130 0.870 37 H 0.153 0.847 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.159 0.841 41 H 0.408 0.592 42 H -0.023 1.023 43 H -0.012 1.012 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.312 9.175 1.045 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.051 4.051 3 C -0.190 4.190 4 C -0.206 4.206 5 C -0.160 4.160 6 C 0.313 3.687 7 O -0.423 6.423 8 N -0.344 5.344 9 C -0.082 4.082 10 S -0.022 6.022 11 C -0.210 4.210 12 C 0.015 3.985 13 H 0.133 0.867 14 C 0.275 3.725 15 O -0.458 6.458 16 N -0.354 5.354 17 C 0.150 3.850 18 C -0.592 4.592 19 H 0.105 0.895 20 C -0.197 4.197 21 N -0.571 5.571 22 Si 0.809 3.191 23 H -0.173 1.173 24 H -0.203 1.203 25 H -0.207 1.207 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.125 0.875 36 H 0.147 0.853 37 H 0.170 0.830 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.177 0.823 41 H 0.244 0.756 42 H -0.005 1.005 43 H 0.006 0.994 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 22.424 9.475 1.060 24.366 hybrid contribution -2.259 -0.753 -0.519 2.438 sum 20.164 8.721 0.541 21.976 Atomic orbital electron populations 1.22052 0.96369 1.01763 1.00754 1.20305 0.94459 0.96351 0.94013 1.21823 1.01901 0.92945 1.02363 1.22036 1.00934 1.01029 0.96636 1.21885 1.03926 0.89135 1.01026 1.21273 0.78852 0.88559 0.79985 1.90639 1.37391 1.77395 1.36856 1.48383 1.51928 1.10334 1.23719 1.24537 0.96617 0.96715 0.90320 1.88203 1.23370 1.06528 1.84141 1.24512 0.96549 1.03037 0.96909 1.21163 0.89722 0.85584 1.02000 0.86683 1.21432 0.91085 0.83850 0.76167 1.90639 1.70490 1.33452 1.51174 1.46097 1.08289 1.08065 1.72921 1.18473 0.75976 0.96907 0.93651 1.21641 0.93037 0.91725 1.52749 0.89540 1.26096 0.96787 1.02993 0.93815 1.70156 1.02765 1.34138 1.50031 0.85096 0.78689 0.77697 0.77642 1.17349 1.20311 1.20690 0.93570 0.92929 0.93810 0.90545 0.92405 0.91929 0.93122 0.93037 0.91401 0.87497 0.85258 0.82951 0.88074 0.88114 0.82349 0.75621 1.00483 0.99390 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 8.18 71.98 0.59 -3.88 16 2 C -0.05 -1.09 0.77 -52.18 -0.04 -1.13 16 3 C -0.13 -1.94 8.47 71.98 0.61 -1.33 16 4 C -0.15 -3.42 8.18 71.98 0.59 -2.83 16 5 C -0.12 -2.31 3.56 29.85 0.11 -2.21 16 6 C 0.52 15.30 6.17 87.66 0.54 15.84 16 7 O -0.55 -21.39 10.09 14.62 0.15 -21.24 16 8 N -0.61 -15.67 2.75 -807.46 -2.22 -17.89 16 9 C 0.15 2.55 7.21 127.56 0.92 3.47 16 10 S -0.25 -4.47 23.43 -56.49 -1.32 -5.80 16 11 C -0.06 -1.25 6.77 72.51 0.49 -0.76 16 12 C 0.13 3.52 2.86 44.97 0.13 3.65 16 13 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 14 C 0.49 20.14 6.37 87.66 0.56 20.70 16 15 O -0.58 -29.46 14.73 14.62 0.22 -29.25 16 16 N -0.70 -30.07 5.43 -466.78 -2.54 -32.61 16 17 C 0.27 15.31 5.43 85.63 0.46 15.77 16 18 C -0.55 -30.35 9.28 25.60 0.24 -30.11 16 19 H 0.09 4.24 7.60 -2.91 -0.02 4.22 16 20 C 0.00 0.14 5.46 84.66 0.46 0.60 16 21 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 22 Si 0.99 42.62 29.54 68.60 2.03 44.65 16 23 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 24 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.04 1.72 5.51 -2.39 -0.01 1.70 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 1.54 5.51 -2.39 -0.01 1.52 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.13 1.47 7.63 -2.39 -0.02 1.45 16 37 H 0.15 1.44 7.13 -2.39 -0.02 1.43 16 38 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.10 2.28 7.85 -2.39 -0.02 2.27 16 40 H 0.16 2.29 8.14 -2.39 -0.02 2.28 16 41 H 0.41 14.09 8.17 -92.71 -0.76 13.33 16 42 H -0.02 -1.49 8.14 -2.39 -0.02 -1.50 16 43 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 44 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -80.90 362.83 2.49 -78.41 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.24 Total: 22.84 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 5.66 Total: 17.78 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -4.47 Total: -107.40 kcal Atomic # 8 Polarization: -50.85 SS G_CDS: 0.36 Total: -50.49 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: -4.47 SS G_CDS: -1.32 Total: -5.80 kcal Total: -80.90 2.49 -78.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331214603.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.772 kcal (2) G-P(sol) polarization free energy of solvation -80.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds