Wall clock time and date at job start Tue Mar 31 2020 10:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30471 * 125.84548 * 2 1 4 4 C 1.34213 * 109.83238 * 179.97438 * 3 2 1 5 5 C 1.47710 * 125.64632 * 180.02562 * 4 3 2 6 6 O 1.21605 * 119.99582 * 179.97438 * 5 4 3 7 7 N 1.34771 * 120.00277 * 359.97438 * 5 4 3 8 8 C 1.36859 * 120.00133 * 179.97438 * 7 5 4 9 9 H 1.08002 * 120.00399 * 0.02562 * 8 7 5 10 10 C 1.39051 * 120.00040 * 180.02562 * 8 7 5 11 11 N 1.31366 * 119.99973 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99971 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47416 * 89.99832 * 12 10 8 14 14 H 1.48506 * 109.46984 * 209.99792 * 12 10 8 15 15 H 1.48503 * 109.47041 * 329.99282 * 12 10 8 16 16 N 1.31802 * 108.70442 * 359.72015 * 4 3 2 17 17 N 1.35067 * 125.84908 * 179.97438 * 2 1 3 18 18 C 1.40135 * 126.75287 * 0.02562 * 17 2 1 19 19 C 1.38877 * 120.06562 * 310.43325 * 18 17 2 20 20 C 1.38087 * 119.93193 * 180.02562 * 19 18 17 21 21 C 1.38308 * 120.06529 * 0.02562 * 20 19 18 22 22 C 1.38257 * 120.13703 * 359.68482 * 21 20 19 23 23 C 1.38132 * 120.06979 * 0.58882 * 22 21 20 24 24 C 1.50698 * 120.03565 * 179.69962 * 23 22 21 25 25 C 1.52996 * 109.46959 * 54.48647 * 24 23 22 26 26 C 1.52993 * 109.47565 * 294.48208 * 24 23 22 27 27 H 1.09002 * 109.47017 * 274.54978 * 1 2 3 28 28 H 1.08999 * 109.47045 * 34.55373 * 1 2 3 29 29 H 1.08998 * 109.47160 * 154.55556 * 1 2 3 30 30 H 0.97004 * 119.99688 * 0.02562 * 7 5 4 31 31 H 0.96995 * 119.99926 * 180.02562 * 11 10 8 32 32 H 1.07998 * 120.03732 * 0.05626 * 19 18 17 33 33 H 1.08001 * 119.96842 * 180.02562 * 20 19 18 34 34 H 1.08005 * 119.93098 * 179.97438 * 21 20 19 35 35 H 1.08005 * 119.96534 * 180.29884 * 22 21 20 36 36 H 1.09002 * 109.47150 * 174.48337 * 24 23 22 37 37 H 1.09005 * 109.47426 * 179.97438 * 25 24 23 38 38 H 1.09001 * 109.47687 * 59.99536 * 25 24 23 39 39 H 1.08999 * 109.47419 * 299.99708 * 25 24 23 40 40 H 1.08998 * 109.47522 * 179.97438 * 26 24 23 41 41 H 1.08998 * 109.47054 * 300.00134 * 26 24 23 42 42 H 1.09002 * 109.46782 * 59.99903 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2710 1.0576 0.0000 4 6 3.5611 0.6874 0.0006 5 6 4.7196 1.6037 0.0013 6 8 5.8498 1.1547 0.0022 7 7 4.5242 2.9371 0.0009 8 6 5.5976 3.7861 0.0021 9 1 6.6014 3.3875 0.0029 10 6 5.3960 5.1619 0.0022 11 7 4.1751 5.6468 0.0007 12 14 6.8612 6.3206 0.0031 13 1 7.2502 6.6279 -1.3967 14 1 6.4969 7.5786 0.7032 15 1 8.0012 5.6765 0.7038 16 7 3.6230 -0.6292 0.0070 17 7 2.2980 -1.0948 0.0005 18 6 1.8790 -2.4320 0.0006 19 6 0.9268 -2.8627 0.9152 20 6 0.5163 -4.1812 0.9132 21 6 1.0528 -5.0725 0.0019 22 6 1.9966 -4.6454 -0.9138 23 6 2.4154 -3.3291 -0.9131 24 6 3.4491 -2.8660 -1.9071 25 6 2.9851 -3.2110 -3.3236 26 6 4.7800 -3.5648 -1.6220 27 1 -0.3633 0.0815 1.0244 28 1 -0.3633 0.8464 -0.5829 29 1 -0.3633 -0.9280 -0.4415 30 1 3.6226 3.2951 0.0005 31 1 4.0344 6.6065 0.0004 32 1 0.5074 -2.1671 1.6269 33 1 -0.2245 -4.5166 1.6239 34 1 0.7305 -6.1034 0.0025 35 1 2.4102 -5.3428 -1.6273 36 1 3.5792 -1.7873 -1.8200 37 1 3.7325 -2.8756 -4.0426 38 1 2.0369 -2.7132 -3.5267 39 1 2.8550 -4.2897 -3.4107 40 1 5.5275 -3.2301 -2.3412 41 1 5.1105 -3.3189 -0.6129 42 1 4.6499 -4.6435 -1.7091 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343033552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:01 Heat of formation + Delta-G solvation = 74.081143 kcal Electronic energy + Delta-G solvation = -25806.396647 eV Core-core repulsion = 22174.179124 eV Total energy + Delta-G solvation = -3632.217523 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.05761 -39.72850 -37.85386 -35.55293 -34.12969 -33.99958 -32.37564 -31.33697 -30.23707 -29.45609 -27.88271 -27.13798 -25.78547 -23.86118 -23.52322 -22.15856 -20.40485 -20.07381 -19.26560 -18.00006 -17.87135 -16.55021 -16.12695 -15.72035 -15.06154 -14.81314 -14.44740 -14.29549 -14.19546 -13.86533 -13.76821 -13.67216 -13.41733 -13.09591 -12.80157 -12.60430 -12.47198 -12.37181 -12.16017 -11.99249 -11.64782 -11.54375 -11.17056 -11.14329 -10.92255 -10.67751 -10.42770 -10.31624 -10.14461 -9.76363 -9.60892 -9.22038 -9.08095 -8.72042 -8.57295 -8.07135 -6.53697 -3.88653 0.74838 1.05347 1.78802 2.36480 2.71787 3.21225 3.23613 3.30087 3.39871 4.02649 4.20216 4.33001 4.43611 4.47444 4.64080 4.72413 4.82813 4.97012 5.10474 5.14723 5.19144 5.25491 5.28772 5.35492 5.43954 5.54257 5.60688 5.69739 5.72962 5.77869 5.84484 5.91291 5.99028 6.05248 6.17067 6.24009 6.34278 6.42305 6.47852 6.59960 6.73384 7.16270 7.44226 7.91838 8.24930 8.56215 9.04976 9.43833 9.96675 10.62182 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.021232 B = 0.003359 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.422305 B = 8333.845724 C = 9103.340201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.276 3.724 3 N -0.513 5.513 4 C 0.224 3.776 5 C 0.504 3.496 6 O -0.578 6.578 7 N -0.516 5.516 8 C -0.298 4.298 9 H 0.110 0.890 10 C 0.028 3.972 11 N -0.879 5.879 12 Si 0.937 3.063 13 H -0.275 1.275 14 H -0.281 1.281 15 H -0.266 1.266 16 N -0.263 5.263 17 N -0.346 5.346 18 C 0.147 3.853 19 C -0.115 4.115 20 C -0.111 4.111 21 C -0.114 4.114 22 C -0.104 4.104 23 C -0.053 4.053 24 C -0.067 4.067 25 C -0.141 4.141 26 C -0.134 4.134 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.405 0.595 31 H 0.277 0.723 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.461 -18.754 -1.883 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.001 3.999 3 N -0.241 5.241 4 C -0.059 4.059 5 C 0.287 3.713 6 O -0.462 6.462 7 N -0.151 5.151 8 C -0.429 4.429 9 H 0.128 0.872 10 C -0.177 4.177 11 N -0.518 5.518 12 Si 0.763 3.237 13 H -0.201 1.201 14 H -0.207 1.207 15 H -0.190 1.190 16 N -0.090 5.090 17 N -0.133 5.133 18 C 0.055 3.945 19 C -0.135 4.135 20 C -0.129 4.129 21 C -0.132 4.132 22 C -0.122 4.122 23 C -0.055 4.055 24 C -0.086 4.086 25 C -0.199 4.199 26 C -0.192 4.192 27 H 0.110 0.890 28 H 0.118 0.882 29 H 0.099 0.901 30 H 0.240 0.760 31 H 0.087 0.913 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.185 -18.882 -1.876 22.026 hybrid contribution -0.180 0.697 0.113 0.728 sum -11.365 -18.185 -1.763 21.517 Atomic orbital electron populations 1.20423 0.83851 1.04637 1.04546 1.24510 0.96614 0.81983 0.96822 1.70650 1.01378 1.28300 1.23790 1.24719 0.92295 0.90606 0.98264 1.15942 0.84779 0.81942 0.88618 1.90660 1.21769 1.75985 1.57774 1.41670 1.10805 1.03159 1.59457 1.19866 0.88838 0.86666 1.47488 0.87205 1.25443 0.98162 0.97681 0.96423 1.69639 1.20328 1.14653 1.47170 0.85750 0.80487 0.78821 0.78645 1.20059 1.20654 1.19040 1.78681 0.93815 1.11350 1.25136 1.47809 1.04846 1.04618 1.56051 1.17339 0.98451 0.81096 0.97567 1.21099 0.98194 0.96909 0.97327 1.20968 1.00386 0.92236 0.99350 1.21238 0.96761 0.99865 0.95358 1.20929 0.97484 0.94522 0.99296 1.19926 0.97238 0.93181 0.95184 1.20267 0.93177 1.02578 0.92560 1.21860 1.01260 1.01210 0.95544 1.21730 0.95596 0.99065 1.02770 0.89037 0.88237 0.90141 0.75975 0.91320 0.85185 0.85068 0.85434 0.85168 0.88969 0.92057 0.92904 0.92556 0.92132 0.91929 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 9.36 36.00 0.34 -0.46 16 2 C 0.28 4.59 7.83 -155.42 -1.22 3.37 16 3 N -0.51 -10.73 10.85 -8.57 -0.09 -10.82 16 4 C 0.22 5.31 7.94 -156.47 -1.24 4.06 16 5 C 0.50 13.78 7.78 -12.39 -0.10 13.68 16 6 O -0.58 -17.35 16.65 5.27 0.09 -17.26 16 7 N -0.52 -14.24 5.27 -11.88 -0.06 -14.30 16 8 C -0.30 -8.48 9.68 -15.01 -0.15 -8.63 16 9 H 0.11 3.21 7.15 -52.49 -0.38 2.84 16 10 C 0.03 0.74 5.50 -17.45 -0.10 0.65 16 11 N -0.88 -23.94 13.05 55.50 0.72 -23.22 16 12 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16 13 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 14 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 16 N -0.26 -5.73 10.58 32.02 0.34 -5.39 16 17 N -0.35 -5.97 3.11 -8.04 -0.03 -5.99 16 18 C 0.15 2.04 5.89 -83.60 -0.49 1.55 16 19 C -0.11 -1.22 8.63 -39.40 -0.34 -1.56 16 20 C -0.11 -0.91 10.04 -39.61 -0.40 -1.31 16 21 C -0.11 -0.91 10.04 -39.55 -0.40 -1.30 16 22 C -0.10 -1.00 8.75 -39.61 -0.35 -1.35 16 23 C -0.05 -0.68 4.80 -104.44 -0.50 -1.18 16 24 C -0.07 -0.93 2.81 -91.78 -0.26 -1.19 16 25 C -0.14 -1.57 8.94 37.16 0.33 -1.24 16 26 C -0.13 -1.77 9.06 37.15 0.34 -1.44 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 0.68 7.26 -51.93 -0.38 0.31 16 30 H 0.40 10.98 7.58 -40.82 -0.31 10.67 16 31 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.13 1.22 7.66 -52.49 -0.40 0.82 16 33 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 34 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 35 H 0.13 1.01 7.10 -52.48 -0.37 0.63 16 36 H 0.09 1.64 5.50 -51.93 -0.29 1.36 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.50 7.10 -51.93 -0.37 0.13 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.54 7.73 -51.93 -0.40 0.14 16 LS Contribution 357.80 15.07 5.39 5.39 Total: -1.00 -33.97 357.80 -8.59 -42.56 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -5.41 Total: 9.64 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -4.52 Total: 3.68 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.88 Total: -59.73 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: 0.09 Total: -17.26 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.97 -8.59 -42.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343033552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.642 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds