Wall clock time and date at job start Tue Mar 31 2020 10:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30471 * 125.84548 * 2 1 4 4 C 1.34213 * 109.83238 * 179.97438 * 3 2 1 5 5 C 1.47710 * 125.64632 * 180.02562 * 4 3 2 6 6 O 1.21605 * 119.99582 * 179.97438 * 5 4 3 7 7 N 1.34771 * 120.00277 * 359.97438 * 5 4 3 8 8 C 1.36859 * 120.00133 * 179.97438 * 7 5 4 9 9 H 1.08002 * 120.00399 * 0.02562 * 8 7 5 10 10 C 1.39051 * 120.00040 * 180.02562 * 8 7 5 11 11 N 1.31366 * 119.99973 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99971 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47416 * 89.99832 * 12 10 8 14 14 H 1.48506 * 109.46984 * 209.99792 * 12 10 8 15 15 H 1.48503 * 109.47041 * 329.99282 * 12 10 8 16 16 N 1.31802 * 108.70442 * 359.72015 * 4 3 2 17 17 N 1.35067 * 125.84908 * 179.97438 * 2 1 3 18 18 C 1.40135 * 126.75287 * 0.02562 * 17 2 1 19 19 C 1.38877 * 120.06562 * 310.43325 * 18 17 2 20 20 C 1.38087 * 119.93193 * 180.02562 * 19 18 17 21 21 C 1.38308 * 120.06529 * 0.02562 * 20 19 18 22 22 C 1.38257 * 120.13703 * 359.68482 * 21 20 19 23 23 C 1.38132 * 120.06979 * 0.58882 * 22 21 20 24 24 C 1.50698 * 120.03565 * 179.69962 * 23 22 21 25 25 C 1.52996 * 109.46959 * 54.48647 * 24 23 22 26 26 C 1.52993 * 109.47565 * 294.48208 * 24 23 22 27 27 H 1.09002 * 109.47017 * 274.54978 * 1 2 3 28 28 H 1.08999 * 109.47045 * 34.55373 * 1 2 3 29 29 H 1.08998 * 109.47160 * 154.55556 * 1 2 3 30 30 H 0.97004 * 119.99688 * 0.02562 * 7 5 4 31 31 H 0.96995 * 119.99926 * 180.02562 * 11 10 8 32 32 H 1.07998 * 120.03732 * 0.05626 * 19 18 17 33 33 H 1.08001 * 119.96842 * 180.02562 * 20 19 18 34 34 H 1.08005 * 119.93098 * 179.97438 * 21 20 19 35 35 H 1.08005 * 119.96534 * 180.29884 * 22 21 20 36 36 H 1.09002 * 109.47150 * 174.48337 * 24 23 22 37 37 H 1.09005 * 109.47426 * 179.97438 * 25 24 23 38 38 H 1.09001 * 109.47687 * 59.99536 * 25 24 23 39 39 H 1.08999 * 109.47419 * 299.99708 * 25 24 23 40 40 H 1.08998 * 109.47522 * 179.97438 * 26 24 23 41 41 H 1.08998 * 109.47054 * 300.00134 * 26 24 23 42 42 H 1.09002 * 109.46782 * 59.99903 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2710 1.0576 0.0000 4 6 3.5611 0.6874 0.0006 5 6 4.7196 1.6037 0.0013 6 8 5.8498 1.1547 0.0022 7 7 4.5242 2.9371 0.0009 8 6 5.5976 3.7861 0.0021 9 1 6.6014 3.3875 0.0029 10 6 5.3960 5.1619 0.0022 11 7 4.1751 5.6468 0.0007 12 14 6.8612 6.3206 0.0031 13 1 7.2502 6.6279 -1.3967 14 1 6.4969 7.5786 0.7032 15 1 8.0012 5.6765 0.7038 16 7 3.6230 -0.6292 0.0070 17 7 2.2980 -1.0948 0.0005 18 6 1.8790 -2.4320 0.0006 19 6 0.9268 -2.8627 0.9152 20 6 0.5163 -4.1812 0.9132 21 6 1.0528 -5.0725 0.0019 22 6 1.9966 -4.6454 -0.9138 23 6 2.4154 -3.3291 -0.9131 24 6 3.4491 -2.8660 -1.9071 25 6 2.9851 -3.2110 -3.3236 26 6 4.7800 -3.5648 -1.6220 27 1 -0.3633 0.0815 1.0244 28 1 -0.3633 0.8464 -0.5829 29 1 -0.3633 -0.9280 -0.4415 30 1 3.6226 3.2951 0.0005 31 1 4.0344 6.6065 0.0004 32 1 0.5074 -2.1671 1.6269 33 1 -0.2245 -4.5166 1.6239 34 1 0.7305 -6.1034 0.0025 35 1 2.4102 -5.3428 -1.6273 36 1 3.5792 -1.7873 -1.8200 37 1 3.7325 -2.8756 -4.0426 38 1 2.0369 -2.7132 -3.5267 39 1 2.8550 -4.2897 -3.4107 40 1 5.5275 -3.2301 -2.3412 41 1 5.1105 -3.3189 -0.6129 42 1 4.6499 -4.6435 -1.7091 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343033552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:00 Heat of formation + Delta-G solvation = 52.736098 kcal Electronic energy + Delta-G solvation = -25807.322238 eV Core-core repulsion = 22174.179124 eV Total energy + Delta-G solvation = -3633.143114 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.48687 -40.69720 -39.91679 -36.48950 -36.21822 -35.28484 -33.71387 -33.43759 -31.08889 -30.53227 -29.10142 -28.12836 -27.71998 -25.23274 -24.57807 -23.47450 -21.58357 -21.21752 -20.98479 -20.08386 -19.13874 -17.89686 -17.54870 -16.94291 -16.70651 -16.22453 -15.97320 -15.43240 -15.35555 -15.13145 -15.11583 -14.82917 -14.74532 -14.62122 -13.94977 -13.79179 -13.63497 -13.39462 -13.15173 -13.09476 -13.00288 -12.95385 -12.59491 -12.55134 -12.19581 -12.11320 -11.93830 -11.71372 -11.66470 -11.36074 -11.29571 -10.89575 -10.71062 -10.21535 -9.86067 -9.57593 -8.61279 -6.09278 -0.28153 0.30297 0.40383 1.07496 1.14537 1.41134 1.47846 1.56376 2.21423 2.34311 2.57713 2.67441 3.11060 3.15806 3.54018 3.61336 3.71791 3.94185 4.06383 4.17630 4.21325 4.30172 4.37651 4.40592 4.48897 4.58849 4.62530 4.66387 4.76402 4.82767 4.83381 4.99639 5.01558 5.05020 5.11103 5.20129 5.26707 5.28332 5.37313 5.47639 5.50198 5.74025 5.79641 6.06656 6.34249 6.77034 6.92254 7.30299 7.83019 8.55512 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.021232 B = 0.003359 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.422305 B = 8333.845724 C = 9103.340201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.281 3.719 3 N -0.543 5.543 4 C 0.195 3.805 5 C 0.499 3.501 6 O -0.619 6.619 7 N -0.519 5.519 8 C -0.343 4.343 9 H 0.091 0.909 10 C -0.004 4.004 11 N -0.900 5.900 12 Si 1.009 2.991 13 H -0.265 1.265 14 H -0.263 1.263 15 H -0.268 1.268 16 N -0.282 5.282 17 N -0.329 5.329 18 C 0.097 3.903 19 C -0.112 4.112 20 C -0.101 4.101 21 C -0.095 4.095 22 C -0.104 4.104 23 C -0.069 4.069 24 C -0.070 4.070 25 C -0.134 4.134 26 C -0.129 4.129 27 H 0.119 0.881 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.404 0.596 31 H 0.287 0.713 32 H 0.141 0.859 33 H 0.169 0.831 34 H 0.168 0.832 35 H 0.153 0.847 36 H 0.042 0.958 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.030 0.970 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.329 -21.384 -1.636 26.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.007 3.993 3 N -0.273 5.273 4 C -0.088 4.088 5 C 0.283 3.717 6 O -0.506 6.506 7 N -0.153 5.153 8 C -0.473 4.473 9 H 0.109 0.891 10 C -0.207 4.207 11 N -0.538 5.538 12 Si 0.829 3.171 13 H -0.190 1.190 14 H -0.187 1.187 15 H -0.193 1.193 16 N -0.111 5.111 17 N -0.116 5.116 18 C 0.006 3.994 19 C -0.133 4.133 20 C -0.119 4.119 21 C -0.113 4.113 22 C -0.123 4.123 23 C -0.071 4.071 24 C -0.089 4.089 25 C -0.191 4.191 26 C -0.187 4.187 27 H 0.137 0.863 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.240 0.760 31 H 0.097 0.903 32 H 0.159 0.841 33 H 0.187 0.813 34 H 0.185 0.815 35 H 0.171 0.829 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.111 -21.528 -1.632 25.792 hybrid contribution 0.530 1.232 0.045 1.342 sum -13.581 -20.296 -1.587 24.472 Atomic orbital electron populations 1.20758 0.79145 1.06394 1.06703 1.25576 0.98634 0.80689 0.94383 1.70542 1.00469 1.30630 1.25703 1.23887 0.92502 0.90752 1.01651 1.16386 0.85528 0.82254 0.87514 1.90588 1.23857 1.76835 1.59353 1.41665 1.10560 1.03383 1.59656 1.19934 0.88451 0.87951 1.50952 0.89135 1.26392 1.01395 0.98296 0.94649 1.69700 1.22059 1.15697 1.46364 0.84725 0.76508 0.76655 0.79162 1.18959 1.18711 1.19254 1.78532 0.97558 1.10558 1.24442 1.47884 1.03022 1.06445 1.54274 1.17890 1.01256 0.79719 1.00486 1.21325 0.97042 0.98454 0.96453 1.21435 1.00189 0.90778 0.99480 1.21747 0.94622 1.01603 0.93373 1.21212 0.97724 0.93108 1.00224 1.19980 0.97383 0.94614 0.95147 1.20183 0.94191 0.99597 0.94957 1.21805 1.00710 1.03088 0.93489 1.21687 0.95339 1.01083 1.00542 0.86251 0.87453 0.87452 0.76034 0.90319 0.84127 0.81338 0.81496 0.82928 0.93974 0.92679 0.93176 0.89487 0.92933 0.95045 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 9.36 71.24 0.67 -0.69 16 2 C 0.28 9.49 7.83 138.13 1.08 10.58 16 3 N -0.54 -24.01 10.85 -181.03 -1.96 -25.97 16 4 C 0.19 9.97 7.94 137.10 1.09 11.06 16 5 C 0.50 29.61 7.78 86.75 0.67 30.28 16 6 O -0.62 -40.44 16.65 -4.05 -0.07 -40.51 16 7 N -0.52 -30.75 5.27 -309.75 -1.63 -32.38 16 8 C -0.34 -20.73 9.68 84.10 0.81 -19.92 16 9 H 0.09 5.70 7.15 -2.91 -0.02 5.68 16 10 C 0.00 -0.24 5.50 84.96 0.47 0.23 16 11 N -0.90 -49.96 13.05 21.68 0.28 -49.67 16 12 Si 1.01 43.10 29.55 68.60 2.03 45.13 16 13 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 14 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 15 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 16 N -0.28 -13.20 10.58 -52.60 -0.56 -13.76 16 17 N -0.33 -11.69 3.11 -179.34 -0.56 -12.25 16 18 C 0.10 2.58 5.89 38.11 0.22 2.81 16 19 C -0.11 -2.04 8.63 22.39 0.19 -1.85 16 20 C -0.10 -1.12 10.04 22.25 0.22 -0.89 16 21 C -0.10 -0.98 10.04 22.29 0.22 -0.76 16 22 C -0.10 -1.60 8.75 22.25 0.19 -1.41 16 23 C -0.07 -1.68 4.80 -19.75 -0.09 -1.77 16 24 C -0.07 -2.00 2.81 -11.54 -0.03 -2.03 16 25 C -0.13 -2.87 8.94 71.98 0.64 -2.23 16 26 C -0.13 -3.52 9.06 71.98 0.65 -2.87 16 27 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.11 1.48 7.26 -2.39 -0.02 1.46 16 30 H 0.40 23.48 7.58 -92.71 -0.70 22.77 16 31 H 0.29 14.52 8.31 -92.71 -0.77 13.75 16 32 H 0.14 2.18 7.66 -2.91 -0.02 2.16 16 33 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 34 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 35 H 0.15 1.62 7.10 -2.91 -0.02 1.59 16 36 H 0.04 1.62 5.50 -2.39 -0.01 1.61 16 37 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.09 1.30 7.10 -2.39 -0.02 1.29 16 40 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 1.66 7.73 -2.39 -0.02 1.64 16 Total: -1.00 -83.04 357.80 4.91 -78.14 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: 0.36 Total: 30.75 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: 7.02 Total: 20.54 kcal Atomic # 7 Polarization: -129.61 SS G_CDS: -4.43 Total: -134.04 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -0.07 Total: -40.51 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -83.04 4.91 -78.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343033552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.873 kcal (2) G-P(sol) polarization free energy of solvation -83.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds