Wall clock time and date at job start Tue Mar 31 2020 10:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30808 * 125.32501 * 2 1 4 4 C 1.34150 * 110.11097 * 180.02562 * 3 2 1 5 5 N 1.33134 * 126.09917 * 179.97438 * 4 3 2 6 6 C 1.32997 * 120.00009 * 0.02562 * 5 4 3 7 7 O 1.21569 * 119.99968 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99935 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47342 * 179.97438 * 8 6 5 10 10 H 1.09007 * 109.47353 * 305.00562 * 9 8 6 11 11 C 1.50700 * 109.47050 * 65.00024 * 9 8 6 12 12 H 1.08003 * 119.99804 * 31.89536 * 11 9 8 13 13 C 1.37878 * 120.00595 * 211.89704 * 11 9 8 14 14 N 1.31520 * 119.99366 * 5.85405 * 13 11 9 15 15 Si 1.86793 * 120.00404 * 185.85245 * 13 11 9 16 16 H 1.48498 * 109.47201 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46968 * 119.99834 * 15 13 11 18 18 H 1.48503 * 109.47325 * 239.99695 * 15 13 11 19 19 C 1.50699 * 109.47628 * 185.00138 * 9 8 6 20 20 C 1.38234 * 120.00194 * 118.33108 * 19 9 8 21 21 C 1.38226 * 120.00123 * 179.97438 * 20 19 9 22 22 C 1.38237 * 120.00178 * 359.97438 * 21 20 19 23 23 C 1.38232 * 119.99731 * 0.02562 * 22 21 20 24 24 C 1.38235 * 120.00405 * 0.08142 * 23 22 21 25 25 N 1.37126 * 107.80291 * 0.23512 * 4 3 2 26 26 C 1.46499 * 127.01570 * 179.76065 * 25 4 3 27 27 N 1.35021 * 125.31993 * 180.02562 * 2 1 3 28 28 H 0.96994 * 126.62053 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.46607 * 89.98331 * 1 2 3 30 30 H 1.08997 * 109.46978 * 209.97825 * 1 2 3 31 31 H 1.08994 * 109.47311 * 329.98201 * 1 2 3 32 32 H 1.09002 * 109.47156 * 60.00311 * 8 6 5 33 33 H 1.09004 * 109.47358 * 300.00516 * 8 6 5 34 34 H 0.96997 * 119.99551 * 180.02562 * 14 13 11 35 35 H 1.08006 * 119.99606 * 0.02562 * 20 19 9 36 36 H 1.08002 * 120.00010 * 179.97438 * 21 20 19 37 37 H 1.08003 * 120.00184 * 179.71921 * 22 21 20 38 38 H 1.08005 * 120.00035 * 179.97438 * 23 22 21 39 39 H 1.07991 * 120.00533 * 179.97438 * 24 23 22 40 40 H 1.09000 * 109.47268 * 90.00823 * 26 25 4 41 41 H 1.09009 * 109.46622 * 209.99913 * 26 25 4 42 42 H 1.08994 * 109.47482 * 329.99562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2633 1.0672 0.0000 4 6 3.5578 0.7152 -0.0006 5 7 4.5970 1.5474 -0.0012 6 6 4.3962 2.8621 -0.0008 7 8 3.2636 3.3039 0.0006 8 6 5.5725 3.8040 -0.0010 9 6 5.0690 5.2488 -0.0011 10 1 4.3927 5.3979 -0.8429 11 6 4.3367 5.5257 1.2866 12 1 4.6381 5.0285 2.1968 13 6 3.2821 6.4136 1.3029 14 7 2.8409 6.9311 0.1771 15 14 2.4799 6.8815 2.9236 16 1 3.1572 6.1673 4.0355 17 1 2.6008 8.3471 3.1308 18 1 1.0443 6.5028 2.8929 19 6 6.2402 6.1890 -0.1251 20 6 6.3361 7.0336 -1.2152 21 6 7.4101 7.8964 -1.3287 22 6 8.3880 7.9150 -0.3518 23 6 8.2920 7.0704 0.7383 24 6 7.2192 6.2060 0.8508 25 7 3.6198 -0.6547 -0.0063 26 6 4.8281 -1.4829 -0.0138 27 7 2.2876 -1.1017 -0.0005 28 1 1.9869 -2.0238 -0.0013 29 1 -0.3632 0.0003 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5141 32 1 6.1770 3.6303 -0.8912 33 1 6.1776 3.6298 0.8887 34 1 2.0992 7.5561 0.1886 35 1 5.5715 7.0199 -1.9779 36 1 7.4853 8.5559 -2.1806 37 1 9.2295 8.5859 -0.4427 38 1 9.0562 7.0847 1.5014 39 1 7.1444 5.5459 1.7021 40 1 5.1313 -1.6925 1.0120 41 1 4.6228 -2.4204 -0.5308 42 1 5.6292 -0.9522 -0.5283 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360178644.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:38 Heat of formation + Delta-G solvation = 123.601466 kcal Electronic energy + Delta-G solvation = -25610.166122 eV Core-core repulsion = 21980.095961 eV Total energy + Delta-G solvation = -3630.070161 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.06587 -38.49601 -37.76574 -34.68763 -34.08261 -33.23958 -31.22234 -30.73755 -30.13125 -29.83937 -28.50992 -26.37441 -25.32635 -22.95809 -21.69570 -21.56698 -21.29964 -19.51780 -18.72558 -17.63357 -16.38325 -16.25582 -15.94986 -15.75774 -15.22011 -14.44591 -14.24425 -14.06740 -13.95787 -13.72775 -13.58793 -13.35462 -12.86850 -12.84952 -12.69844 -12.38085 -12.11295 -11.80361 -11.58078 -11.41042 -10.75437 -10.69334 -10.38930 -10.32500 -10.22492 -10.07676 -9.96504 -9.85062 -9.49118 -9.05538 -8.78104 -8.16525 -7.92396 -7.87642 -7.52374 -7.41198 -5.70175 -3.66753 1.09442 1.15723 2.45625 2.52430 2.97858 3.50116 3.50475 3.56085 3.60368 4.09131 4.61436 4.67849 4.69172 4.73800 4.90445 5.01835 5.05422 5.14319 5.33812 5.38788 5.58545 5.65928 5.80341 5.88551 5.90096 5.99839 6.23551 6.47171 6.57785 6.62282 6.71761 6.81293 6.90468 7.06117 7.14298 7.21849 7.46807 7.54769 7.68131 7.81352 7.89625 8.13331 8.15354 8.29435 8.55479 8.66294 9.32793 9.77990 9.92030 11.40452 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.013235 B = 0.004181 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.023918 B = 6695.043214 C = 8101.149038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.373 3.627 3 N -0.513 5.513 4 C 0.589 3.411 5 N -0.648 5.648 6 C 0.479 3.521 7 O -0.470 6.470 8 C -0.094 4.094 9 C 0.072 3.928 10 H 0.072 0.928 11 C -0.481 4.481 12 H 0.048 0.952 13 C 0.076 3.924 14 N -0.881 5.881 15 Si 0.883 3.117 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.286 1.286 19 C -0.018 4.018 20 C -0.121 4.121 21 C -0.129 4.129 22 C -0.158 4.158 23 C -0.132 4.132 24 C -0.115 4.115 25 N -0.425 5.425 26 C 0.123 3.877 27 N -0.507 5.507 28 H 0.443 0.557 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.255 0.745 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.004 -19.772 -2.331 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.097 3.903 3 N -0.247 5.247 4 C 0.230 3.770 5 N -0.410 5.410 6 C 0.263 3.737 7 O -0.339 6.339 8 C -0.134 4.134 9 C 0.053 3.947 10 H 0.090 0.910 11 C -0.519 4.519 12 H 0.066 0.934 13 C -0.126 4.126 14 N -0.519 5.519 15 Si 0.712 3.288 16 H -0.201 1.201 17 H -0.214 1.214 18 H -0.213 1.213 19 C -0.019 4.019 20 C -0.139 4.139 21 C -0.147 4.147 22 C -0.176 4.176 23 C -0.150 4.150 24 C -0.133 4.133 25 N -0.234 5.234 26 C -0.018 4.018 27 N -0.236 5.236 28 H 0.290 0.710 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.129 0.871 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.166 -18.657 -2.398 18.811 hybrid contribution -0.850 -0.723 1.030 1.519 sum -0.685 -19.380 -1.368 19.440 Atomic orbital electron populations 1.20618 0.82743 1.05683 1.05278 1.24402 0.96141 0.81597 0.88116 1.72211 1.01037 1.24437 1.27051 1.21197 0.88525 0.81109 0.86137 1.69507 1.26002 1.06610 1.38925 1.21198 0.91207 0.84627 0.76691 1.90840 1.24571 1.80091 1.38407 1.21366 0.95207 0.96060 1.00808 1.17921 0.90116 0.85922 1.00699 0.90966 1.20715 1.13877 1.24076 0.93186 0.93362 1.24792 0.96069 0.96309 0.95432 1.69933 1.26235 1.30701 1.25055 0.86688 0.79396 0.77778 0.84986 1.20069 1.21384 1.21268 1.20818 0.93914 0.96171 0.90962 1.21109 0.97198 0.96883 0.98736 1.20966 0.95503 0.99515 0.98734 1.20764 0.99533 1.01170 0.96169 1.20964 0.98628 0.97595 0.97856 1.20972 0.94041 0.99273 0.99031 1.47643 0.95420 1.05531 1.74824 1.21877 0.82525 0.94198 1.03245 1.45033 0.96347 1.09292 1.72915 0.70952 0.88109 0.89570 0.87123 0.92299 0.91140 0.93513 0.86817 0.87747 0.87924 0.87748 0.86864 0.91309 0.90756 0.87439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.51 36.00 0.38 -0.17 16 2 C 0.37 4.38 8.17 -155.18 -1.27 3.11 16 3 N -0.51 -9.78 9.18 -11.07 -0.10 -9.89 16 4 C 0.59 11.13 8.39 -321.65 -2.70 8.44 16 5 N -0.65 -14.19 10.42 -13.32 -0.14 -14.33 16 6 C 0.48 12.27 7.46 -11.77 -0.09 12.19 16 7 O -0.47 -13.83 13.50 5.30 0.07 -13.76 16 8 C -0.09 -2.28 5.00 -27.88 -0.14 -2.42 16 9 C 0.07 1.97 1.73 -92.93 -0.16 1.81 16 10 H 0.07 2.22 6.87 -51.92 -0.36 1.87 16 11 C -0.48 -14.31 6.44 -34.44 -0.22 -14.53 16 12 H 0.05 1.45 7.82 -52.48 -0.41 1.04 16 13 C 0.08 2.32 5.45 -17.82 -0.10 2.23 16 14 N -0.88 -27.78 12.81 55.43 0.71 -27.07 16 15 Si 0.88 23.70 29.54 -169.99 -5.02 18.68 16 16 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 17 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 18 H -0.29 -7.68 7.11 56.52 0.40 -7.27 16 19 C -0.02 -0.44 4.77 -104.62 -0.50 -0.94 16 20 C -0.12 -2.82 9.67 -39.59 -0.38 -3.20 16 21 C -0.13 -2.60 10.05 -39.59 -0.40 -3.00 16 22 C -0.16 -3.01 10.05 -39.58 -0.40 -3.40 16 23 C -0.13 -2.61 10.05 -39.58 -0.40 -3.00 16 24 C -0.12 -2.58 8.86 -39.58 -0.35 -2.93 16 25 N -0.42 -5.27 4.12 -68.90 -0.28 -5.56 16 26 C 0.12 0.97 11.51 59.85 0.69 1.66 16 27 N -0.51 -4.38 7.36 32.72 0.24 -4.14 16 28 H 0.44 1.51 8.96 -182.28 -1.63 -0.12 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.07 1.64 7.66 -51.93 -0.40 1.24 16 34 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 35 H 0.11 2.68 7.95 -52.48 -0.42 2.26 16 36 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 37 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 38 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 39 H 0.11 2.48 7.70 -52.49 -0.40 2.08 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.32 8.14 -51.92 -0.42 -0.11 16 42 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 362.79 15.07 5.47 5.47 Total: -1.00 -42.66 362.79 -12.07 -54.73 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.98 Total: 0.04 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -6.03 Total: -4.18 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: 0.43 Total: -60.98 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.07 Total: -13.76 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -5.02 Total: 18.68 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -42.66 -12.07 -54.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360178644.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.333 kcal (2) G-P(sol) polarization free energy of solvation -42.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds