Wall clock time and date at job start Tue Mar 31 2020 10:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30808 * 125.32501 * 2 1 4 4 C 1.34150 * 110.11097 * 180.02562 * 3 2 1 5 5 N 1.33134 * 126.09917 * 179.97438 * 4 3 2 6 6 C 1.32997 * 120.00009 * 0.02562 * 5 4 3 7 7 O 1.21569 * 119.99968 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99935 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47342 * 179.97438 * 8 6 5 10 10 H 1.09007 * 109.47353 * 305.00562 * 9 8 6 11 11 C 1.50700 * 109.47050 * 65.00024 * 9 8 6 12 12 H 1.08003 * 119.99804 * 31.89536 * 11 9 8 13 13 C 1.37878 * 120.00595 * 211.89704 * 11 9 8 14 14 N 1.31520 * 119.99366 * 5.85405 * 13 11 9 15 15 Si 1.86793 * 120.00404 * 185.85245 * 13 11 9 16 16 H 1.48498 * 109.47201 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46968 * 119.99834 * 15 13 11 18 18 H 1.48503 * 109.47325 * 239.99695 * 15 13 11 19 19 C 1.50699 * 109.47628 * 185.00138 * 9 8 6 20 20 C 1.38234 * 120.00194 * 118.33108 * 19 9 8 21 21 C 1.38226 * 120.00123 * 179.97438 * 20 19 9 22 22 C 1.38237 * 120.00178 * 359.97438 * 21 20 19 23 23 C 1.38232 * 119.99731 * 0.02562 * 22 21 20 24 24 C 1.38235 * 120.00405 * 0.08142 * 23 22 21 25 25 N 1.37126 * 107.80291 * 0.23512 * 4 3 2 26 26 C 1.46499 * 127.01570 * 179.76065 * 25 4 3 27 27 N 1.35021 * 125.31993 * 180.02562 * 2 1 3 28 28 H 0.96994 * 126.62053 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.46607 * 89.98331 * 1 2 3 30 30 H 1.08997 * 109.46978 * 209.97825 * 1 2 3 31 31 H 1.08994 * 109.47311 * 329.98201 * 1 2 3 32 32 H 1.09002 * 109.47156 * 60.00311 * 8 6 5 33 33 H 1.09004 * 109.47358 * 300.00516 * 8 6 5 34 34 H 0.96997 * 119.99551 * 180.02562 * 14 13 11 35 35 H 1.08006 * 119.99606 * 0.02562 * 20 19 9 36 36 H 1.08002 * 120.00010 * 179.97438 * 21 20 19 37 37 H 1.08003 * 120.00184 * 179.71921 * 22 21 20 38 38 H 1.08005 * 120.00035 * 179.97438 * 23 22 21 39 39 H 1.07991 * 120.00533 * 179.97438 * 24 23 22 40 40 H 1.09000 * 109.47268 * 90.00823 * 26 25 4 41 41 H 1.09009 * 109.46622 * 209.99913 * 26 25 4 42 42 H 1.08994 * 109.47482 * 329.99562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2633 1.0672 0.0000 4 6 3.5578 0.7152 -0.0006 5 7 4.5970 1.5474 -0.0012 6 6 4.3962 2.8621 -0.0008 7 8 3.2636 3.3039 0.0006 8 6 5.5725 3.8040 -0.0010 9 6 5.0690 5.2488 -0.0011 10 1 4.3927 5.3979 -0.8429 11 6 4.3367 5.5257 1.2866 12 1 4.6381 5.0285 2.1968 13 6 3.2821 6.4136 1.3029 14 7 2.8409 6.9311 0.1771 15 14 2.4799 6.8815 2.9236 16 1 3.1572 6.1673 4.0355 17 1 2.6008 8.3471 3.1308 18 1 1.0443 6.5028 2.8929 19 6 6.2402 6.1890 -0.1251 20 6 6.3361 7.0336 -1.2152 21 6 7.4101 7.8964 -1.3287 22 6 8.3880 7.9150 -0.3518 23 6 8.2920 7.0704 0.7383 24 6 7.2192 6.2060 0.8508 25 7 3.6198 -0.6547 -0.0063 26 6 4.8281 -1.4829 -0.0138 27 7 2.2876 -1.1017 -0.0005 28 1 1.9869 -2.0238 -0.0013 29 1 -0.3632 0.0003 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5141 32 1 6.1770 3.6303 -0.8912 33 1 6.1776 3.6298 0.8887 34 1 2.0992 7.5561 0.1886 35 1 5.5715 7.0199 -1.9779 36 1 7.4853 8.5559 -2.1806 37 1 9.2295 8.5859 -0.4427 38 1 9.0562 7.0847 1.5014 39 1 7.1444 5.5459 1.7021 40 1 5.1313 -1.6925 1.0120 41 1 4.6228 -2.4204 -0.5308 42 1 5.6292 -0.9522 -0.5283 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360178644.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:37 Heat of formation + Delta-G solvation = 93.908189 kcal Electronic energy + Delta-G solvation = -25611.453719 eV Core-core repulsion = 21980.095961 eV Total energy + Delta-G solvation = -3631.357758 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.22631 -40.26751 -39.46142 -35.96945 -35.62072 -34.81897 -33.34920 -32.14686 -31.49984 -30.82775 -30.23638 -27.71003 -27.03486 -24.80344 -23.26202 -22.89531 -22.56693 -21.23410 -20.08939 -18.98839 -18.41943 -17.57634 -17.42587 -17.03471 -16.85687 -16.41981 -15.88104 -15.55618 -15.29364 -15.19874 -14.92624 -14.73243 -14.24398 -13.98983 -13.63395 -13.60117 -13.53083 -13.41521 -13.24694 -13.15492 -12.84279 -12.51516 -12.43054 -11.92088 -11.81889 -11.66763 -11.47447 -11.32062 -11.01550 -11.00252 -10.88716 -10.43426 -9.74569 -9.54139 -9.17241 -8.94319 -7.98531 -6.00590 -0.08209 0.19861 0.77987 0.85560 1.33472 1.36697 1.46419 1.61397 2.48613 2.48848 3.02540 3.19676 3.24586 3.37036 3.62069 3.91369 3.99333 4.27753 4.35862 4.40497 4.46374 4.61220 4.64526 4.67104 4.68125 4.74312 4.76963 4.84229 4.93631 4.94008 5.01577 5.08793 5.24897 5.39528 5.52492 5.68944 5.81432 5.83575 5.85534 6.02583 6.22437 6.36830 6.45876 6.50073 6.62655 7.04149 7.11017 7.59147 8.05352 9.12113 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.013235 B = 0.004181 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.023918 B = 6695.043214 C = 8101.149038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.385 3.615 3 N -0.595 5.595 4 C 0.575 3.425 5 N -0.678 5.678 6 C 0.473 3.527 7 O -0.536 6.536 8 C -0.086 4.086 9 C 0.081 3.919 10 H 0.021 0.979 11 C -0.479 4.479 12 H 0.035 0.965 13 C 0.019 3.981 14 N -0.917 5.917 15 Si 0.940 3.060 16 H -0.269 1.269 17 H -0.275 1.275 18 H -0.287 1.287 19 C -0.046 4.046 20 C -0.147 4.147 21 C -0.126 4.126 22 C -0.146 4.146 23 C -0.124 4.124 24 C -0.130 4.130 25 N -0.409 5.409 26 C 0.110 3.890 27 N -0.463 5.463 28 H 0.473 0.527 29 H 0.122 0.878 30 H 0.138 0.862 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.253 0.747 35 H 0.092 0.908 36 H 0.136 0.864 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.123 0.877 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.056 -22.052 -1.468 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.111 3.889 3 N -0.332 5.332 4 C 0.215 3.785 5 N -0.445 5.445 6 C 0.258 3.742 7 O -0.409 6.409 8 C -0.126 4.126 9 C 0.062 3.938 10 H 0.039 0.961 11 C -0.517 4.517 12 H 0.054 0.946 13 C -0.179 4.179 14 N -0.557 5.557 15 Si 0.767 3.233 16 H -0.194 1.194 17 H -0.201 1.201 18 H -0.214 1.214 19 C -0.047 4.047 20 C -0.165 4.165 21 C -0.143 4.143 22 C -0.164 4.164 23 C -0.142 4.142 24 C -0.148 4.148 25 N -0.215 5.215 26 C -0.028 4.028 27 N -0.193 5.193 28 H 0.328 0.672 29 H 0.140 0.860 30 H 0.156 0.844 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.110 0.890 36 H 0.153 0.847 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.128 0.872 40 H 0.103 0.897 41 H 0.142 0.858 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.191 -21.154 -1.526 21.243 hybrid contribution -1.210 -0.382 0.694 1.446 sum -0.019 -21.536 -0.832 21.553 Atomic orbital electron populations 1.20934 0.78825 1.07217 1.07037 1.25296 0.97877 0.80611 0.85142 1.72113 1.02006 1.28329 1.30747 1.21311 0.88526 0.83105 0.85513 1.69323 1.27021 1.04973 1.43198 1.21405 0.90421 0.86398 0.75981 1.90789 1.26201 1.81083 1.42874 1.21226 0.95324 0.94698 1.01378 1.17640 0.90418 0.88313 0.97438 0.96075 1.20877 1.14130 1.23135 0.93554 0.94647 1.25539 0.96963 0.96814 0.98556 1.70094 1.26972 1.31794 1.26887 0.85779 0.78220 0.77971 0.81344 1.19382 1.20100 1.21367 1.20591 0.94416 0.96727 0.92972 1.21100 0.98486 0.98455 0.98458 1.21294 0.94306 0.98594 1.00152 1.21281 0.99862 1.00587 0.94624 1.21375 0.97973 0.95972 0.98859 1.21022 0.94815 1.00560 0.98405 1.48016 0.97906 1.04214 1.71318 1.22335 0.80531 0.95033 1.04930 1.45160 0.94453 1.10383 1.69333 0.67235 0.85957 0.84376 0.89118 0.91261 0.90577 0.93812 0.89021 0.84656 0.83343 0.83857 0.87246 0.89680 0.85822 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.51 71.24 0.75 -0.11 16 2 C 0.39 8.51 8.17 138.05 1.13 9.63 16 3 N -0.59 -23.60 9.18 -188.95 -1.73 -25.33 16 4 C 0.58 22.48 8.39 261.08 2.19 24.67 16 5 N -0.68 -31.59 10.42 -315.31 -3.28 -34.87 16 6 C 0.47 26.35 7.46 87.93 0.66 27.00 16 7 O -0.54 -34.44 13.50 -3.93 -0.05 -34.49 16 8 C -0.09 -4.52 5.00 29.85 0.15 -4.37 16 9 C 0.08 4.77 1.73 -12.29 -0.02 4.74 16 10 H 0.02 1.43 6.87 -2.38 -0.02 1.41 16 11 C -0.48 -30.38 6.44 25.60 0.16 -30.22 16 12 H 0.04 2.26 7.82 -2.91 -0.02 2.24 16 13 C 0.02 1.24 5.45 84.65 0.46 1.70 16 14 N -0.92 -61.70 12.81 21.45 0.27 -61.42 16 15 Si 0.94 50.78 29.54 68.60 2.03 52.81 16 16 H -0.27 -14.07 7.11 99.48 0.71 -13.36 16 17 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 18 H -0.29 -15.40 7.11 99.48 0.71 -14.69 16 19 C -0.05 -2.41 4.77 -19.87 -0.09 -2.50 16 20 C -0.15 -7.13 9.67 22.27 0.22 -6.91 16 21 C -0.13 -4.89 10.05 22.27 0.22 -4.67 16 22 C -0.15 -5.02 10.05 22.27 0.22 -4.80 16 23 C -0.12 -4.56 10.05 22.27 0.22 -4.34 16 24 C -0.13 -5.89 8.86 22.27 0.20 -5.69 16 25 N -0.41 -9.47 4.12 -371.89 -1.53 -11.00 16 26 C 0.11 1.44 11.51 127.77 1.47 2.91 16 27 N -0.46 -6.48 7.36 -50.40 -0.37 -6.85 16 28 H 0.47 0.74 8.96 -213.06 -1.91 -1.17 16 29 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.14 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 3.36 8.14 -2.39 -0.02 3.34 16 33 H 0.08 3.80 7.66 -2.39 -0.02 3.78 16 34 H 0.25 16.18 8.31 -92.71 -0.77 15.41 16 35 H 0.09 4.72 7.95 -2.91 -0.02 4.70 16 36 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 37 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 38 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 39 H 0.11 4.92 7.70 -2.92 -0.02 4.90 16 40 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.12 0.45 8.14 -2.38 -0.02 0.43 16 42 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -105.93 362.79 2.39 -103.54 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -0.87 Total: 10.57 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 7.94 Total: 7.05 kcal Atomic # 7 Polarization: -132.83 SS G_CDS: -6.65 Total: -139.48 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.05 Total: -34.49 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 2.03 Total: 52.81 kcal Total: -105.93 2.39 -103.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360178644.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.449 kcal (2) G-P(sol) polarization free energy of solvation -105.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds