Wall clock time and date at job start Tue Mar 31 2020 11:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47584 * 2 1 4 4 C 1.52998 * 109.47098 * 120.00350 * 2 1 3 5 5 N 1.46503 * 109.47171 * 64.99516 * 4 2 1 6 6 C 1.34775 * 119.99905 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00180 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99983 * 180.02562 * 6 5 4 9 9 H 1.09001 * 108.70339 * 61.74261 * 8 6 5 10 10 C 1.54561 * 108.74972 * 303.64164 * 8 6 5 11 11 S 1.84211 * 101.32569 * 262.12685 * 10 8 6 12 12 C 1.84332 * 93.82937 * 327.58739 * 11 10 8 13 13 N 1.45503 * 108.75452 * 180.02562 * 8 6 5 14 14 C 1.34770 * 122.42721 * 302.04707 * 13 8 6 15 15 O 1.21286 * 120.00222 * 359.97438 * 14 13 8 16 16 C 1.50703 * 119.99761 * 180.02562 * 14 13 8 17 17 C 1.53005 * 109.47304 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.47088 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00496 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99572 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00327 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99951 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 59.99744 * 22 20 18 24 24 H 1.48503 * 109.47261 * 299.99924 * 22 20 18 25 25 H 1.48500 * 109.47454 * 179.97438 * 22 20 18 26 26 H 1.09006 * 109.46576 * 300.00179 * 1 2 3 27 27 H 1.09002 * 109.46712 * 59.99727 * 1 2 3 28 28 H 1.08991 * 109.47195 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46794 * 240.00268 * 2 1 3 30 30 H 1.08997 * 109.47250 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47339 * 300.00402 * 3 2 1 32 32 H 1.09001 * 109.46836 * 59.99739 * 3 2 1 33 33 H 1.08997 * 109.47097 * 304.99534 * 4 2 1 34 34 H 1.09001 * 109.47057 * 184.99798 * 4 2 1 35 35 H 0.97001 * 119.99662 * 0.02562 * 5 4 2 36 36 H 1.08996 * 111.05390 * 20.13695 * 10 8 6 37 37 H 1.08996 * 111.05070 * 144.08053 * 10 8 6 38 38 H 1.09000 * 110.90258 * 275.44054 * 12 11 10 39 39 H 1.09001 * 110.77139 * 151.92962 * 12 11 10 40 40 H 1.09002 * 109.47152 * 59.99841 * 16 14 13 41 41 H 1.09001 * 109.47438 * 299.99667 * 16 14 13 42 42 H 1.09002 * 109.46935 * 59.99966 * 17 16 14 43 43 H 1.08998 * 109.47061 * 300.00759 * 17 16 14 44 44 H 0.97006 * 119.99995 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6523 -2.1329 1.1905 6 6 1.9963 -2.9683 2.1906 7 8 2.6264 -2.5515 3.1393 8 6 1.5980 -4.4205 2.1299 9 1 2.0641 -4.8746 1.2554 10 6 0.0630 -4.5085 1.9729 11 16 -0.4626 -4.8009 3.7141 12 6 1.0566 -5.7526 4.1431 13 7 2.0902 -5.0908 3.3239 14 6 3.3964 -5.1109 3.6549 15 8 4.2102 -4.5570 2.9464 16 6 3.8461 -5.8226 4.9049 17 6 5.3643 -5.6955 5.0460 18 6 5.8140 -6.4077 6.2956 19 1 5.0896 -6.9020 6.9259 20 6 7.1504 -6.4284 6.6342 21 7 8.0326 -5.8261 5.8670 22 14 7.7081 -7.3118 8.1827 23 1 7.3382 -8.7473 8.0941 24 1 7.0478 -6.7026 9.3652 25 1 9.1816 -7.1884 8.3197 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6054 -0.2618 2.1369 34 1 3.1263 -0.6444 1.2951 35 1 1.1487 -2.4663 0.4315 36 1 -0.3460 -3.5726 1.5924 37 1 -0.2178 -5.3449 1.3329 38 1 0.9517 -6.8003 3.8611 39 1 1.2852 -5.6578 5.2046 40 1 3.5745 -6.8763 4.8407 41 1 3.3615 -5.3746 5.7724 42 1 5.6364 -4.6419 5.1100 43 1 5.8486 -6.1437 4.1784 44 1 7.7431 -5.3676 5.0626 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361774688.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:33 Heat of formation + Delta-G solvation = -79.271803 kcal Electronic energy + Delta-G solvation = -24564.137974 eV Core-core repulsion = 21028.421768 eV Total energy + Delta-G solvation = -3535.716206 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.61474 -38.86289 -36.88795 -35.93231 -33.79173 -33.60697 -31.80479 -30.37001 -27.58778 -27.48551 -26.46866 -25.52581 -23.70072 -21.94545 -20.84926 -20.34360 -19.07459 -17.73307 -17.61188 -16.90878 -16.29508 -16.00506 -15.66574 -15.43961 -14.91369 -14.78739 -14.21746 -13.85883 -13.74460 -13.67166 -13.53113 -13.39442 -13.18927 -12.88713 -12.59213 -12.43853 -12.36042 -12.10008 -12.00318 -11.53407 -11.45708 -11.28837 -11.10131 -10.80067 -10.71977 -10.11731 -10.08941 -10.04637 -9.89680 -9.32589 -9.16193 -8.71423 -8.51166 -8.25398 -8.13063 -6.28764 -3.98707 1.31983 1.69732 2.56292 2.64698 3.00741 3.26253 3.47300 3.50235 3.68837 3.94559 4.34792 4.39875 4.49814 4.59532 4.64388 4.73331 4.84180 4.91543 5.08344 5.11647 5.15987 5.23929 5.28839 5.33885 5.42766 5.49107 5.52224 5.59222 5.74752 5.87290 5.92610 6.02715 6.11123 6.19058 6.30838 6.69820 7.32440 7.40892 7.54161 7.61367 8.19230 8.22603 8.51861 8.58957 8.94798 9.74966 11.12205 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.015679 B = 0.003299 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.348973 B = 8484.551769 C = 9901.032669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C -0.146 4.146 4 C 0.125 3.875 5 N -0.735 5.735 6 C 0.507 3.493 7 O -0.495 6.495 8 C 0.116 3.884 9 H 0.108 0.892 10 C -0.070 4.070 11 S -0.266 6.266 12 C 0.164 3.836 13 N -0.614 5.614 14 C 0.533 3.467 15 O -0.510 6.510 16 C -0.116 4.116 17 C 0.026 3.974 18 C -0.608 4.608 19 H 0.049 0.951 20 C 0.015 3.985 21 N -0.911 5.911 22 Si 1.070 2.930 23 H -0.288 1.288 24 H -0.288 1.288 25 H -0.282 1.282 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.395 0.605 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.016 0.984 43 H 0.014 0.986 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.742 6.773 -14.184 26.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.203 4.203 4 C 0.002 3.998 5 N -0.390 5.390 6 C 0.289 3.711 7 O -0.367 6.367 8 C 0.007 3.993 9 H 0.126 0.874 10 C -0.219 4.219 11 S -0.041 6.041 12 C -0.070 4.070 13 N -0.353 5.353 14 C 0.323 3.677 15 O -0.382 6.382 16 C -0.156 4.156 17 C -0.012 4.012 18 C -0.646 4.646 19 H 0.068 0.932 20 C -0.189 4.189 21 N -0.546 5.546 22 Si 0.898 3.102 23 H -0.215 1.215 24 H -0.215 1.215 25 H -0.208 1.208 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.229 0.771 36 H 0.138 0.862 37 H 0.130 0.870 38 H 0.119 0.881 39 H 0.138 0.862 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.035 0.965 43 H 0.032 0.968 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.405 7.344 -12.265 24.915 hybrid contribution -0.858 -0.081 -1.959 2.140 sum -21.264 7.263 -14.224 26.594 Atomic orbital electron populations 1.21870 0.94739 1.01735 1.02185 1.21358 0.96355 0.97075 0.97894 1.21761 1.01515 0.94860 1.02207 1.21411 1.00431 0.80078 0.97917 1.45913 1.59354 1.09888 1.23848 1.20639 0.79809 0.87719 0.82885 1.90782 1.36622 1.76667 1.32602 1.21076 0.94124 0.92280 0.91862 0.87401 1.24528 0.93471 1.07272 0.96592 1.88417 1.29624 1.73146 1.12907 1.24319 0.84865 0.97443 1.00397 1.48516 1.07516 1.55247 1.23995 1.21436 0.79011 0.79309 0.87968 1.90670 1.51404 1.43497 1.52657 1.21744 1.02271 0.99224 0.92338 1.19018 0.87364 0.97540 0.97253 1.22008 0.95390 1.37912 1.09317 0.93247 1.25849 0.93145 0.96867 1.03068 1.70729 1.36826 1.32260 1.14808 0.83538 0.76233 0.75671 0.74717 1.21475 1.21450 1.20777 0.92306 0.92387 0.92796 0.90536 0.92172 0.92172 0.92263 0.91460 0.91345 0.77078 0.86181 0.86972 0.88125 0.86150 0.90009 0.89877 0.96539 0.96792 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.07 37.16 0.34 -0.51 16 2 C -0.11 -0.75 2.96 -90.62 -0.27 -1.02 16 3 C -0.15 -0.96 9.19 37.16 0.34 -0.62 16 4 C 0.13 1.30 5.06 -4.04 -0.02 1.28 16 5 N -0.74 -7.67 4.86 -60.29 -0.29 -7.96 16 6 C 0.51 7.55 6.54 -10.98 -0.07 7.48 16 7 O -0.50 -10.25 14.38 -15.30 -0.22 -10.47 16 8 C 0.12 1.45 2.91 -68.80 -0.20 1.25 16 9 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 10 C -0.07 -0.57 6.94 37.98 0.26 -0.30 16 11 S -0.27 -2.96 23.44 -107.50 -2.52 -5.48 16 12 C 0.16 1.96 7.23 60.43 0.44 2.39 16 13 N -0.61 -9.45 2.80 -169.05 -0.47 -9.93 16 14 C 0.53 10.94 6.73 -10.99 -0.07 10.87 16 15 O -0.51 -12.50 14.44 -15.31 -0.22 -12.73 16 16 C -0.12 -2.48 4.42 -27.88 -0.12 -2.60 16 17 C 0.03 0.71 3.57 -27.88 -0.10 0.61 16 18 C -0.61 -17.85 9.11 -34.44 -0.31 -18.17 16 19 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 20 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 21 N -0.91 -29.38 13.65 55.43 0.76 -28.62 16 22 Si 1.07 25.91 29.90 -169.99 -5.08 20.83 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.27 7.18 -51.93 -0.37 -0.10 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.40 2.67 7.06 -40.82 -0.29 2.38 16 36 H 0.12 0.77 7.01 -51.93 -0.36 0.41 16 37 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.12 1.46 7.13 -51.93 -0.37 1.09 16 40 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.08 1.69 7.64 -51.93 -0.40 1.30 16 42 H 0.02 0.50 7.96 -51.93 -0.41 0.09 16 43 H 0.01 0.41 7.97 -51.93 -0.41 -0.01 16 44 H 0.27 8.94 7.22 -40.82 -0.29 8.65 16 LS Contribution 368.60 15.07 5.55 5.55 Total: -1.00 -39.08 368.60 -9.58 -48.66 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.19 Total: -0.88 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 0.11 Total: 1.02 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.01 Total: -46.51 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.44 Total: -23.20 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -5.08 Total: 20.83 kcal Atomic # 16 Polarization: -2.96 SS G_CDS: -2.52 Total: -5.48 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -39.08 -9.58 -48.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361774688.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.615 kcal (2) G-P(sol) polarization free energy of solvation -39.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds