Wall clock time and date at job start Tue Mar 31 2020 11:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47584 * 2 1 4 4 C 1.52998 * 109.47098 * 120.00350 * 2 1 3 5 5 N 1.46503 * 109.47171 * 64.99516 * 4 2 1 6 6 C 1.34775 * 119.99905 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00180 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99983 * 180.02562 * 6 5 4 9 9 H 1.09001 * 108.70339 * 61.74261 * 8 6 5 10 10 C 1.54561 * 108.74972 * 303.64164 * 8 6 5 11 11 S 1.84211 * 101.32569 * 262.12685 * 10 8 6 12 12 C 1.84332 * 93.82937 * 327.58739 * 11 10 8 13 13 N 1.45503 * 108.75452 * 180.02562 * 8 6 5 14 14 C 1.34770 * 122.42721 * 302.04707 * 13 8 6 15 15 O 1.21286 * 120.00222 * 359.97438 * 14 13 8 16 16 C 1.50703 * 119.99761 * 180.02562 * 14 13 8 17 17 C 1.53005 * 109.47304 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.47088 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00496 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99572 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00327 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99951 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 59.99744 * 22 20 18 24 24 H 1.48503 * 109.47261 * 299.99924 * 22 20 18 25 25 H 1.48500 * 109.47454 * 179.97438 * 22 20 18 26 26 H 1.09006 * 109.46576 * 300.00179 * 1 2 3 27 27 H 1.09002 * 109.46712 * 59.99727 * 1 2 3 28 28 H 1.08991 * 109.47195 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46794 * 240.00268 * 2 1 3 30 30 H 1.08997 * 109.47250 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47339 * 300.00402 * 3 2 1 32 32 H 1.09001 * 109.46836 * 59.99739 * 3 2 1 33 33 H 1.08997 * 109.47097 * 304.99534 * 4 2 1 34 34 H 1.09001 * 109.47057 * 184.99798 * 4 2 1 35 35 H 0.97001 * 119.99662 * 0.02562 * 5 4 2 36 36 H 1.08996 * 111.05390 * 20.13695 * 10 8 6 37 37 H 1.08996 * 111.05070 * 144.08053 * 10 8 6 38 38 H 1.09000 * 110.90258 * 275.44054 * 12 11 10 39 39 H 1.09001 * 110.77139 * 151.92962 * 12 11 10 40 40 H 1.09002 * 109.47152 * 59.99841 * 16 14 13 41 41 H 1.09001 * 109.47438 * 299.99667 * 16 14 13 42 42 H 1.09002 * 109.46935 * 59.99966 * 17 16 14 43 43 H 1.08998 * 109.47061 * 300.00759 * 17 16 14 44 44 H 0.97006 * 119.99995 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6523 -2.1329 1.1905 6 6 1.9963 -2.9683 2.1906 7 8 2.6264 -2.5515 3.1393 8 6 1.5980 -4.4205 2.1299 9 1 2.0641 -4.8746 1.2554 10 6 0.0630 -4.5085 1.9729 11 16 -0.4626 -4.8009 3.7141 12 6 1.0566 -5.7526 4.1431 13 7 2.0902 -5.0908 3.3239 14 6 3.3964 -5.1109 3.6549 15 8 4.2102 -4.5570 2.9464 16 6 3.8461 -5.8226 4.9049 17 6 5.3643 -5.6955 5.0460 18 6 5.8140 -6.4077 6.2956 19 1 5.0896 -6.9020 6.9259 20 6 7.1504 -6.4284 6.6342 21 7 8.0326 -5.8261 5.8670 22 14 7.7081 -7.3118 8.1827 23 1 7.3382 -8.7473 8.0941 24 1 7.0478 -6.7026 9.3652 25 1 9.1816 -7.1884 8.3197 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6054 -0.2618 2.1369 34 1 3.1263 -0.6444 1.2951 35 1 1.1487 -2.4663 0.4315 36 1 -0.3460 -3.5726 1.5924 37 1 -0.2178 -5.3449 1.3329 38 1 0.9517 -6.8003 3.8611 39 1 1.2852 -5.6578 5.2046 40 1 3.5745 -6.8763 4.8407 41 1 3.3615 -5.3746 5.7724 42 1 5.6364 -4.6419 5.1100 43 1 5.8486 -6.1437 4.1784 44 1 7.7431 -5.3676 5.0626 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361774688.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:33 Heat of formation + Delta-G solvation = -106.591291 kcal Electronic energy + Delta-G solvation = -24565.322636 eV Core-core repulsion = 21028.421768 eV Total energy + Delta-G solvation = -3536.900868 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.86346 -40.20662 -37.83510 -37.19076 -35.98534 -34.60511 -33.28433 -31.93773 -28.53894 -28.08554 -27.44342 -27.34156 -25.10224 -23.72666 -21.79562 -21.43639 -20.32924 -19.21861 -18.76158 -18.47172 -17.82115 -17.06389 -16.81388 -16.51332 -16.16757 -15.95489 -15.61432 -15.19499 -15.03617 -14.93686 -14.48568 -14.36854 -14.32101 -14.06622 -13.83779 -13.59858 -13.58175 -13.31002 -13.20036 -12.94948 -12.67703 -12.11295 -12.09186 -12.08027 -11.91638 -11.87640 -11.70752 -11.65998 -11.28566 -10.96934 -10.70450 -10.57377 -10.21447 -9.96436 -8.97188 -8.72171 -6.43990 0.46937 0.86713 1.37583 1.48403 1.52870 1.63461 1.65279 1.81859 2.11290 2.58408 3.03948 3.14836 3.51026 3.61492 3.72045 3.88183 3.98361 4.00902 4.06723 4.17456 4.23055 4.26884 4.32782 4.40707 4.50936 4.60102 4.72725 4.78595 4.79840 4.96344 4.98297 5.04685 5.17333 5.24656 5.26066 5.31864 5.36563 5.43772 5.89057 5.95511 6.15744 6.41525 6.47635 7.01940 7.19385 7.42621 8.67511 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.015679 B = 0.003299 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.348973 B = 8484.551769 C = 9901.032669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.147 4.147 4 C 0.125 3.875 5 N -0.712 5.712 6 C 0.498 3.502 7 O -0.564 6.564 8 C 0.109 3.891 9 H 0.125 0.875 10 C -0.048 4.048 11 S -0.283 6.283 12 C 0.155 3.845 13 N -0.607 5.607 14 C 0.533 3.467 15 O -0.564 6.564 16 C -0.106 4.106 17 C 0.032 3.968 18 C -0.619 4.619 19 H 0.069 0.931 20 C -0.046 4.046 21 N -0.939 5.939 22 Si 1.126 2.874 23 H -0.259 1.259 24 H -0.266 1.266 25 H -0.287 1.287 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.037 0.963 35 H 0.417 0.583 36 H 0.142 0.858 37 H 0.155 0.845 38 H 0.135 0.865 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.094 0.906 42 H -0.030 1.030 43 H -0.017 1.017 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.081 5.236 -14.891 29.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.205 4.205 4 C 0.001 3.999 5 N -0.367 5.367 6 C 0.282 3.718 7 O -0.441 6.441 8 C 0.000 4.000 9 H 0.142 0.858 10 C -0.196 4.196 11 S -0.058 6.058 12 C -0.078 4.078 13 N -0.344 5.344 14 C 0.322 3.678 15 O -0.441 6.441 16 C -0.146 4.146 17 C -0.006 4.006 18 C -0.656 4.656 19 H 0.087 0.913 20 C -0.243 4.243 21 N -0.576 5.576 22 Si 0.945 3.055 23 H -0.184 1.184 24 H -0.191 1.191 25 H -0.213 1.213 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.255 0.745 36 H 0.160 0.840 37 H 0.173 0.827 38 H 0.153 0.847 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.112 0.888 42 H -0.012 1.012 43 H 0.001 0.999 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -23.878 5.798 -13.037 27.816 hybrid contribution 0.097 0.481 -1.820 1.885 sum -23.781 6.279 -14.856 28.734 Atomic orbital electron populations 1.21866 0.93153 1.02691 1.02588 1.21313 0.97516 0.96694 0.96090 1.21789 1.00925 0.94884 1.02903 1.21424 0.98644 0.80349 0.99488 1.45751 1.58091 1.09515 1.23376 1.21225 0.78827 0.89106 0.82596 1.90761 1.39873 1.78004 1.35493 1.21405 0.97352 0.90229 0.91014 0.85769 1.24747 0.89357 1.10340 0.95179 1.88552 1.28250 1.73331 1.15629 1.24641 0.84121 0.99075 0.99939 1.48305 1.06476 1.54503 1.25073 1.21060 0.80623 0.78825 0.87251 1.90645 1.53515 1.45760 1.54172 1.21506 0.97690 1.01552 0.93835 1.18815 0.91913 0.94081 0.95773 1.22478 0.96060 1.37358 1.09709 0.91269 1.27740 0.93917 0.96759 1.05856 1.70895 1.37562 1.34182 1.14981 0.82869 0.75657 0.76028 0.70946 1.18385 1.19061 1.21282 0.93110 0.90801 0.91576 0.89334 0.93232 0.90334 0.92681 0.92901 0.94446 0.74485 0.83965 0.82655 0.84685 0.86619 0.86912 0.88821 1.01215 0.99892 0.94103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.07 71.98 0.65 -0.64 16 2 C -0.10 -1.22 2.96 -10.79 -0.03 -1.25 16 3 C -0.15 -1.85 9.19 71.98 0.66 -1.19 16 4 C 0.12 2.67 5.06 86.38 0.44 3.10 16 5 N -0.71 -14.23 4.86 -463.06 -2.25 -16.48 16 6 C 0.50 14.86 6.54 87.66 0.57 15.43 16 7 O -0.56 -24.63 14.38 16.93 0.24 -24.38 16 8 C 0.11 2.52 2.91 44.97 0.13 2.65 16 9 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 10 C -0.05 -0.59 6.94 72.51 0.50 -0.08 16 11 S -0.28 -5.48 23.44 -56.49 -1.32 -6.80 16 12 C 0.15 3.34 7.23 127.56 0.92 4.26 16 13 N -0.61 -18.13 2.80 -807.13 -2.26 -20.39 16 14 C 0.53 22.46 6.73 87.66 0.59 23.05 16 15 O -0.56 -29.31 14.44 16.90 0.24 -29.07 16 16 C -0.11 -4.61 4.42 29.85 0.13 -4.48 16 17 C 0.03 1.85 3.57 29.85 0.11 1.96 16 18 C -0.62 -36.84 9.11 25.60 0.23 -36.61 16 19 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 20 C -0.05 -2.83 5.46 84.66 0.46 -2.37 16 21 N -0.94 -63.10 13.65 21.45 0.29 -62.80 16 22 Si 1.13 51.59 29.90 68.60 2.05 53.64 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 26 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.07 0.42 7.18 -2.39 -0.02 0.40 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.42 4.46 7.06 -92.71 -0.65 3.81 16 36 H 0.14 1.15 7.01 -2.39 -0.02 1.14 16 37 H 0.16 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.12 2.61 7.13 -2.39 -0.02 2.60 16 40 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 41 H 0.09 3.84 7.64 -2.39 -0.02 3.82 16 42 H -0.03 -2.04 7.96 -2.39 -0.02 -2.06 16 43 H -0.02 -1.10 7.97 -2.39 -0.02 -1.12 16 44 H 0.25 17.56 7.22 -92.70 -0.67 16.89 16 Total: -1.00 -93.39 368.60 2.80 -90.59 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.43 Total: 11.87 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 5.37 Total: 3.83 kcal Atomic # 7 Polarization: -95.45 SS G_CDS: -4.22 Total: -99.67 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: 0.49 Total: -53.45 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 2.05 Total: 53.64 kcal Atomic # 16 Polarization: -5.48 SS G_CDS: -1.32 Total: -6.80 kcal Total: -93.39 2.80 -90.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361774688.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.006 kcal (2) G-P(sol) polarization free energy of solvation -93.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds