Wall clock time and date at job start Tue Mar 31 2020 10:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50710 * 109.46465 * 2 1 4 4 C 1.38138 * 120.03315 * 264.97591 * 3 2 1 5 5 C 1.38258 * 120.06578 * 180.02562 * 4 3 2 6 6 C 1.38296 * 120.12823 * 359.95268 * 5 4 3 7 7 C 1.38095 * 120.06889 * 359.79033 * 6 5 4 8 8 C 1.38811 * 120.03036 * 85.00485 * 3 2 1 9 9 N 1.40220 * 120.06449 * 359.94797 * 8 3 2 10 10 C 1.35081 * 126.61302 * 180.02562 * 9 8 3 11 11 C 1.36619 * 106.79823 * 179.97438 * 10 9 8 12 12 C 1.47506 * 125.76789 * 179.97438 * 11 10 9 13 13 O 1.21598 * 119.99897 * 353.90744 * 12 11 10 14 14 N 1.34776 * 120.00320 * 173.63445 * 12 11 10 15 15 C 1.46500 * 119.99457 * 354.74670 * 14 12 11 16 16 C 1.46497 * 120.00319 * 174.75079 * 14 12 11 17 17 C 1.50700 * 109.47253 * 89.99753 * 16 14 12 18 18 H 1.07996 * 119.99761 * 359.97438 * 17 16 14 19 19 C 1.37881 * 119.99534 * 180.02562 * 17 16 14 20 20 N 1.31503 * 120.00426 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99407 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47454 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47121 * 119.99827 * 21 19 17 24 24 H 1.48496 * 109.46963 * 239.99806 * 21 19 17 25 25 N 1.34411 * 108.46291 * 0.22665 * 11 10 9 26 26 N 1.28748 * 109.58122 * 359.61099 * 25 11 10 27 27 H 1.08998 * 109.46380 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47040 * 299.99906 * 1 2 3 29 29 H 1.08999 * 109.46827 * 60.00361 * 1 2 3 30 30 H 1.08996 * 109.46947 * 240.00557 * 2 1 3 31 31 H 1.08990 * 109.47006 * 119.99676 * 2 1 3 32 32 H 1.07999 * 119.96930 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.93227 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.96459 * 180.02562 * 6 5 4 35 35 H 1.07996 * 120.03446 * 180.22763 * 7 6 5 36 36 H 1.08004 * 126.59699 * 359.97438 * 10 9 8 37 37 H 1.09000 * 109.47184 * 85.31137 * 15 14 12 38 38 H 1.09001 * 109.47058 * 205.31388 * 15 14 12 39 39 H 1.09000 * 109.47463 * 325.30896 * 15 14 12 40 40 H 1.09009 * 109.46809 * 209.99620 * 16 14 12 41 41 H 1.09003 * 109.46837 * 329.99347 * 16 14 12 42 42 H 0.96997 * 120.00282 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4210 0.0000 4 6 2.3614 2.0379 -1.1913 5 6 2.8227 3.3413 -1.1921 6 6 2.9551 4.0315 -0.0009 7 6 2.6226 3.4217 1.1927 8 6 2.1651 2.1108 1.1972 9 7 1.8313 1.4873 2.4080 10 6 1.9084 2.0310 3.6422 11 6 1.4871 1.0744 4.5220 12 6 1.4044 1.2267 5.9868 13 8 1.8310 2.2337 6.5184 14 7 0.8511 0.2522 6.7356 15 6 0.2287 -0.9050 6.0877 16 6 0.8721 0.3501 8.1971 17 6 -0.3652 1.0687 8.6702 18 1 -1.0939 1.4180 7.9538 19 6 -0.5661 1.2812 10.0177 20 7 0.3216 0.8564 10.8899 21 14 -2.1001 2.1714 10.6041 22 1 -2.9350 2.5427 9.4336 23 1 -2.8768 1.2798 11.5025 24 1 -1.7083 3.3987 11.3426 25 7 1.1659 -0.0307 3.8276 26 7 1.3526 0.1796 2.5712 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5137 0.8899 32 1 2.2583 1.5017 -2.1231 33 1 3.0798 3.8214 -2.1247 34 1 3.3153 5.0496 -0.0046 35 1 2.7227 3.9625 2.1221 36 1 2.2394 3.0296 3.8864 37 1 0.9906 -1.6540 5.8719 38 1 -0.5231 -1.3322 6.7514 39 1 -0.2447 -0.5899 5.1578 40 1 0.8980 -0.6509 8.6279 41 1 1.7567 0.9040 8.5115 42 1 0.1800 1.0056 11.8378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411180270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:04 Heat of formation + Delta-G solvation = 107.992633 kcal Electronic energy + Delta-G solvation = -25476.600606 eV Core-core repulsion = 21845.853595 eV Total energy + Delta-G solvation = -3630.747011 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.45018 -39.89116 -38.54000 -35.01253 -34.73077 -34.38114 -32.55628 -30.88337 -30.39218 -29.53211 -27.72054 -25.84202 -24.75001 -24.46130 -23.27238 -22.36785 -21.50761 -21.16678 -19.31280 -17.91825 -16.60659 -16.45449 -16.14986 -16.04829 -15.68257 -15.36831 -14.96886 -14.51692 -14.39871 -14.09891 -14.05539 -13.93988 -13.53231 -12.87708 -12.69299 -12.33384 -12.28619 -12.22189 -12.05646 -11.94120 -11.79751 -11.33706 -11.25627 -11.17318 -10.97641 -10.79686 -10.67988 -10.47553 -10.12034 -9.58214 -9.43794 -9.26923 -9.17651 -8.67085 -8.40723 -7.59908 -6.01129 -4.05391 0.25911 0.84271 1.60739 1.88582 1.96472 3.27045 3.32807 3.39857 3.44620 3.77405 3.91537 4.14815 4.25306 4.35241 4.47801 4.53208 4.67058 4.81684 4.85368 5.02099 5.09544 5.12621 5.24709 5.25428 5.32356 5.33655 5.57320 5.67183 5.74760 5.82831 5.97905 6.00387 6.04625 6.15042 6.21021 6.22928 6.25145 6.54179 6.67075 7.08631 7.44010 7.55555 7.92835 7.97817 8.25739 8.40850 8.89084 9.05408 9.59244 11.07049 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.023537 B = 0.002930 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.335627 B = 9553.472714 C =10026.565070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.098 4.098 3 C -0.066 4.066 4 C -0.101 4.101 5 C -0.115 4.115 6 C -0.102 4.102 7 C -0.123 4.123 8 C 0.137 3.863 9 N -0.313 5.313 10 C 0.081 3.919 11 C -0.071 4.071 12 C 0.585 3.415 13 O -0.537 6.537 14 N -0.582 5.582 15 C 0.089 3.911 16 C 0.245 3.755 17 C -0.523 4.523 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.895 5.895 21 Si 0.898 3.102 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 N -0.197 5.197 26 N -0.066 5.066 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.205 0.795 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.037 0.963 41 H 0.044 0.956 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.755 1.926 -26.530 27.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.135 4.135 3 C -0.068 4.068 4 C -0.120 4.120 5 C -0.134 4.134 6 C -0.121 4.121 7 C -0.144 4.144 8 C 0.045 3.955 9 N -0.092 5.092 10 C -0.072 4.072 11 C -0.209 4.209 12 C 0.368 3.632 13 O -0.414 6.414 14 N -0.312 5.312 15 C -0.055 4.055 16 C 0.126 3.874 17 C -0.562 4.562 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.535 5.535 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.209 1.209 25 N -0.070 5.070 26 N -0.044 5.044 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.221 0.779 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.593 1.090 -26.630 27.045 hybrid contribution -0.548 1.486 0.796 1.772 sum 4.045 2.575 -25.834 26.275 Atomic orbital electron populations 1.21586 0.94126 1.02106 1.01344 1.20931 0.96969 0.91220 1.04410 1.19806 0.98766 0.97424 0.90779 1.21006 0.98847 0.95062 0.97047 1.21301 0.98952 0.94606 0.98491 1.21004 0.99425 1.00325 0.91352 1.20997 1.00717 0.92428 1.00229 1.17540 1.02814 0.92605 0.82547 1.47569 1.44318 1.12315 1.04980 1.23351 0.99482 1.01297 0.83021 1.21954 1.10772 0.90982 0.97206 1.16734 0.79873 0.84014 0.82575 1.90786 1.50273 1.28337 1.72011 1.48004 1.53896 1.19970 1.09341 1.21816 0.97636 0.88282 0.97810 1.19388 0.98496 0.97841 0.71641 1.21466 1.05739 1.36993 0.92019 0.92301 1.24930 0.96900 0.95741 0.96561 1.69936 1.34922 1.46671 1.01941 0.86433 0.82830 0.79451 0.78657 1.19801 1.20978 1.20889 1.74888 1.11142 1.22416 0.98570 1.82003 1.18708 0.92723 1.10921 0.91965 0.92676 0.93336 0.91156 0.87700 0.84857 0.85168 0.84682 0.84611 0.77870 0.93341 0.91162 0.91153 0.94528 0.93756 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.46 37.16 0.35 -0.95 16 2 C -0.10 -0.94 5.34 -27.87 -0.15 -1.08 16 3 C -0.07 -0.63 5.15 -104.44 -0.54 -1.17 16 4 C -0.10 -0.73 9.68 -39.61 -0.38 -1.11 16 5 C -0.11 -0.71 10.04 -39.55 -0.40 -1.11 16 6 C -0.10 -0.69 10.04 -39.61 -0.40 -1.09 16 7 C -0.12 -1.07 9.47 -39.41 -0.37 -1.44 16 8 C 0.14 1.50 6.68 -83.58 -0.56 0.94 16 9 N -0.31 -4.18 3.81 -10.42 -0.04 -4.22 16 10 C 0.08 1.17 10.61 -16.71 -0.18 0.99 16 11 C -0.07 -1.27 6.62 -83.55 -0.55 -1.83 16 12 C 0.58 12.97 7.65 -12.48 -0.10 12.88 16 13 O -0.54 -13.53 16.51 5.28 0.09 -13.45 16 14 N -0.58 -13.28 2.86 -184.20 -0.53 -13.81 16 15 C 0.09 1.65 9.29 59.85 0.56 2.21 16 16 C 0.25 6.57 5.10 -5.20 -0.03 6.55 16 17 C -0.52 -15.12 9.39 -34.44 -0.32 -15.45 16 18 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 21 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 N -0.20 -3.31 9.05 32.85 0.30 -3.02 16 26 N -0.07 -0.98 8.56 60.35 0.52 -0.46 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.66 7.19 -51.93 -0.37 0.28 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 31 H 0.11 1.22 5.40 -51.93 -0.28 0.94 16 32 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 34 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 35 H 0.14 1.00 6.81 -52.49 -0.36 0.64 16 36 H 0.20 2.36 7.13 -52.48 -0.37 1.99 16 37 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 38 H 0.07 1.29 8.04 -51.93 -0.42 0.87 16 39 H 0.07 1.24 5.86 -51.93 -0.30 0.94 16 40 H 0.04 0.99 8.07 -51.92 -0.42 0.57 16 41 H 0.04 1.31 7.50 -51.93 -0.39 0.92 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 353.68 15.07 5.33 5.33 Total: -1.00 -33.98 353.68 -7.20 -41.18 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.42 Total: -2.57 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -3.16 Total: -0.02 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.98 Total: -47.57 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.09 Total: -13.45 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.98 -7.20 -41.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411180270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.172 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds