Wall clock time and date at job start Tue Mar 31 2020 11:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47423 * 2 1 4 4 C 1.50706 * 109.46708 * 240.00521 * 2 1 3 5 5 H 1.08005 * 119.99758 * 239.99895 * 4 2 1 6 6 C 1.37871 * 120.00102 * 60.00011 * 4 2 1 7 7 N 1.31516 * 120.00213 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99763 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47291 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46819 * 120.00151 * 8 6 4 11 11 H 1.48500 * 109.47560 * 239.99651 * 8 6 4 12 12 C 1.52998 * 109.47322 * 120.00376 * 2 1 3 13 13 N 1.46496 * 109.46851 * 299.99616 * 12 2 1 14 14 C 1.34777 * 119.99614 * 179.97438 * 13 12 2 15 15 O 1.21355 * 120.00214 * 0.02562 * 14 13 12 16 16 C 1.49456 * 119.99994 * 180.02562 * 14 13 12 17 17 O 1.21341 * 119.99628 * 0.02562 * 16 14 13 18 18 N 1.34773 * 119.99966 * 179.73002 * 16 14 13 19 19 C 1.46506 * 119.99968 * 180.02562 * 18 16 14 20 20 C 1.53002 * 109.47041 * 179.97438 * 19 18 16 21 21 H 1.08998 * 110.75735 * 59.29651 * 20 19 18 22 22 C 1.55138 * 110.85353 * 182.79293 * 20 19 18 23 23 C 1.54041 * 106.80458 * 160.10377 * 22 20 19 24 24 C 1.54274 * 109.08709 * 313.05403 * 23 22 20 25 25 S 1.83096 * 104.65352 * 27.82503 * 24 23 22 26 26 H 1.09002 * 109.47051 * 300.00087 * 1 2 3 27 27 H 1.09005 * 109.47120 * 59.99376 * 1 2 3 28 28 H 1.08994 * 109.47233 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47317 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.46937 * 300.00528 * 3 2 1 31 31 H 1.09002 * 109.46811 * 60.00410 * 3 2 1 32 32 H 0.96999 * 120.00124 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.46986 * 179.97438 * 12 2 1 34 34 H 1.09002 * 109.46857 * 59.99529 * 12 2 1 35 35 H 0.96996 * 120.00499 * 0.02562 * 13 12 2 36 36 H 0.97004 * 120.00018 * 359.97438 * 18 16 14 37 37 H 1.09004 * 109.46587 * 299.99661 * 19 18 16 38 38 H 1.08993 * 109.47306 * 59.99553 * 19 18 16 39 39 H 1.08999 * 109.97599 * 279.65497 * 22 20 19 40 40 H 1.09001 * 109.97496 * 40.92926 * 22 20 19 41 41 H 1.08996 * 109.63123 * 193.02130 * 23 22 20 42 42 H 1.08996 * 109.28460 * 72.87443 * 23 22 20 43 43 H 1.09005 * 110.40142 * 269.03383 * 24 23 22 44 44 H 1.08994 * 110.40200 * 146.62348 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3223 -1.1193 -4.0080 9 1 3.1471 -2.2861 -3.6040 10 1 1.1675 -1.5863 -4.8166 11 1 3.1470 -0.1856 -4.8162 12 6 2.0400 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4453 14 6 1.8770 -0.4916 3.6694 15 8 2.5747 -1.4783 3.7807 16 6 1.3785 0.2126 4.8898 17 8 0.6805 1.1989 4.7785 18 7 1.6992 -0.2514 6.1138 19 6 1.2100 0.4385 7.3101 20 6 1.7137 -0.2874 8.5592 21 1 2.8032 -0.3146 8.5772 22 6 1.1564 0.3762 9.8460 23 6 1.2757 -0.6673 10.9728 24 6 0.7382 -2.0214 10.4653 25 16 1.0161 -1.9815 8.6560 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 0.7088 1.1617 -3.4843 33 1 3.1300 -0.7217 1.2489 34 1 1.6766 -1.7490 1.2491 35 1 0.9938 0.7577 2.3564 36 1 2.2533 -1.0426 6.2027 37 1 1.5770 1.4649 7.3130 38 1 0.1201 0.4423 7.3071 39 1 1.7412 1.2628 10.0910 40 1 0.1106 0.6478 9.7019 41 1 0.6940 -0.3429 11.8355 42 1 2.3228 -0.7726 11.2564 43 1 -0.3256 -2.1141 10.6843 44 1 1.2929 -2.8438 10.9169 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422339490.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:55 Heat of formation + Delta-G solvation = -86.402356 kcal Electronic energy + Delta-G solvation = -23783.929594 eV Core-core repulsion = 20247.904184 eV Total energy + Delta-G solvation = -3536.025410 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.38554 -38.44444 -37.05793 -36.45168 -34.95537 -33.27684 -30.96203 -30.87100 -27.19591 -26.00447 -25.70544 -25.23046 -23.89818 -22.40544 -21.51217 -20.04127 -18.98335 -18.29595 -17.27608 -16.66913 -16.22036 -15.82962 -15.70420 -15.27798 -14.86313 -14.70132 -14.59108 -14.41683 -13.88859 -13.46291 -13.28998 -12.92158 -12.75560 -12.59025 -12.20927 -12.17182 -12.11290 -11.77003 -11.43690 -11.39039 -11.38539 -11.17000 -10.88050 -10.66051 -10.38570 -10.30002 -10.18811 -9.63694 -9.52867 -9.34117 -9.21251 -8.77792 -8.57641 -8.35978 -8.05770 -6.01439 -4.12025 1.31775 1.67491 1.93916 2.55469 3.27990 3.36638 3.40936 3.49996 3.83841 4.03264 4.11610 4.28335 4.40511 4.46391 4.62949 4.66599 4.84635 5.01682 5.11511 5.20104 5.25244 5.27359 5.31988 5.41659 5.56387 6.08492 6.13606 6.25834 6.49026 6.65733 6.84409 6.86953 6.95949 7.02157 7.08874 7.35018 7.56744 7.67975 7.72362 7.98306 8.01683 8.14327 8.34480 8.43523 8.88454 9.53836 11.00013 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.038906 B = 0.002275 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.508046 B =12302.263052 C =12650.567634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.055 3.945 3 C -0.133 4.133 4 C -0.505 4.505 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.128 3.872 13 N -0.680 5.680 14 C 0.496 3.504 15 O -0.534 6.534 16 C 0.510 3.490 17 O -0.520 6.520 18 N -0.705 5.705 19 C 0.138 3.862 20 C -0.060 4.060 21 H 0.107 0.893 22 C -0.121 4.121 23 C -0.128 4.128 24 C -0.078 4.078 25 S -0.274 6.274 26 H 0.009 0.991 27 H 0.087 0.913 28 H 0.028 0.972 29 H 0.027 0.973 30 H 0.087 0.913 31 H 0.008 0.992 32 H 0.260 0.740 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.411 0.589 36 H 0.414 0.586 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.017 0.056 26.346 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.054 3.946 3 C -0.191 4.191 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.006 3.994 13 N -0.332 5.332 14 C 0.275 3.725 15 O -0.412 6.412 16 C 0.291 3.709 17 O -0.395 6.395 18 N -0.360 5.360 19 C 0.013 3.987 20 C -0.189 4.189 21 H 0.125 0.875 22 C -0.161 4.161 23 C -0.167 4.167 24 C -0.227 4.227 25 S -0.048 6.048 26 H 0.028 0.972 27 H 0.106 0.894 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.106 0.894 31 H 0.027 0.973 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.248 0.752 36 H 0.251 0.749 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.315 -0.646 25.324 25.335 hybrid contribution 0.542 0.302 0.093 0.627 sum 0.227 -0.344 25.418 25.421 Atomic orbital electron populations 1.21855 0.97574 0.99315 1.00394 1.18395 0.93002 0.92879 0.90299 1.21855 0.98609 0.98257 1.00393 1.20989 1.31541 1.12121 0.89750 0.92293 1.24890 0.94865 0.94933 0.98896 1.69820 1.36602 1.22692 1.23169 0.86499 0.78621 0.79706 0.82947 1.19758 1.21069 1.21074 1.21941 0.98544 0.96061 0.82833 1.46208 1.50448 1.31393 1.05114 1.19925 0.82455 0.85237 0.84890 1.90734 1.37855 1.25854 1.86734 1.20471 0.80912 0.84620 0.84889 1.90750 1.36419 1.25525 1.86846 1.45711 1.53528 1.32063 1.04651 1.21315 1.00432 0.95762 0.81221 1.24359 1.03308 0.93584 0.97608 0.87464 1.22631 1.02997 0.99018 0.91415 1.22324 1.02634 0.92669 0.99046 1.24029 1.04887 1.00569 0.93192 1.88063 1.83640 1.21900 1.11200 0.97248 0.89444 0.95326 0.95351 0.89439 0.97257 0.93014 0.91997 0.91987 0.75201 0.74914 0.89674 0.89806 0.89156 0.89692 0.89613 0.90542 0.88837 0.88565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.08 37.16 0.30 -2.80 16 2 C 0.05 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -3.08 8.08 37.16 0.30 -2.77 16 4 C -0.51 -13.21 8.01 -34.44 -0.28 -13.49 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -23.72 9.35 55.43 0.52 -23.21 16 8 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.13 2.72 4.50 -4.04 -0.02 2.71 16 13 N -0.68 -12.90 4.95 -60.73 -0.30 -13.20 16 14 C 0.50 8.97 7.89 -11.58 -0.09 8.88 16 15 O -0.53 -10.58 16.48 5.49 0.09 -10.49 16 16 C 0.51 8.02 7.89 -11.58 -0.09 7.93 16 17 O -0.52 -9.05 16.48 5.50 0.09 -8.96 16 18 N -0.70 -8.69 5.36 -60.73 -0.33 -9.01 16 19 C 0.14 1.28 5.21 -4.04 -0.02 1.26 16 20 C -0.06 -0.42 3.29 -25.60 -0.08 -0.51 16 21 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 22 C -0.12 -0.57 5.92 -25.06 -0.15 -0.72 16 23 C -0.13 -0.53 6.38 -25.52 -0.16 -0.69 16 24 C -0.08 -0.45 7.34 37.82 0.28 -0.17 16 25 S -0.27 -2.53 22.31 -107.50 -2.40 -4.93 16 26 H 0.01 0.18 6.86 -51.93 -0.36 -0.17 16 27 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 31 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 32 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.41 7.65 5.63 -40.82 -0.23 7.42 16 36 H 0.41 5.01 7.71 -40.82 -0.31 4.70 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.41 8.08 -51.93 -0.42 0.00 16 41 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 365.08 15.07 5.50 5.50 Total: -1.00 -29.42 365.08 -8.95 -38.37 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -6.92 Total: 7.74 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -0.19 Total: 2.47 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: -0.11 Total: -45.42 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: 0.18 Total: -19.45 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -2.53 SS G_CDS: -2.40 Total: -4.93 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.42 -8.95 -38.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422339490.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.030 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds