Wall clock time and date at job start Tue Mar 31 2020 11:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47423 * 2 1 4 4 C 1.50706 * 109.46708 * 240.00521 * 2 1 3 5 5 H 1.08005 * 119.99758 * 239.99895 * 4 2 1 6 6 C 1.37871 * 120.00102 * 60.00011 * 4 2 1 7 7 N 1.31516 * 120.00213 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99763 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47291 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46819 * 120.00151 * 8 6 4 11 11 H 1.48500 * 109.47560 * 239.99651 * 8 6 4 12 12 C 1.52998 * 109.47322 * 120.00376 * 2 1 3 13 13 N 1.46496 * 109.46851 * 299.99616 * 12 2 1 14 14 C 1.34777 * 119.99614 * 179.97438 * 13 12 2 15 15 O 1.21355 * 120.00214 * 0.02562 * 14 13 12 16 16 C 1.49456 * 119.99994 * 180.02562 * 14 13 12 17 17 O 1.21341 * 119.99628 * 0.02562 * 16 14 13 18 18 N 1.34773 * 119.99966 * 179.73002 * 16 14 13 19 19 C 1.46506 * 119.99968 * 180.02562 * 18 16 14 20 20 C 1.53002 * 109.47041 * 179.97438 * 19 18 16 21 21 H 1.08998 * 110.75735 * 59.29651 * 20 19 18 22 22 C 1.55138 * 110.85353 * 182.79293 * 20 19 18 23 23 C 1.54041 * 106.80458 * 160.10377 * 22 20 19 24 24 C 1.54274 * 109.08709 * 313.05403 * 23 22 20 25 25 S 1.83096 * 104.65352 * 27.82503 * 24 23 22 26 26 H 1.09002 * 109.47051 * 300.00087 * 1 2 3 27 27 H 1.09005 * 109.47120 * 59.99376 * 1 2 3 28 28 H 1.08994 * 109.47233 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47317 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.46937 * 300.00528 * 3 2 1 31 31 H 1.09002 * 109.46811 * 60.00410 * 3 2 1 32 32 H 0.96999 * 120.00124 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.46986 * 179.97438 * 12 2 1 34 34 H 1.09002 * 109.46857 * 59.99529 * 12 2 1 35 35 H 0.96996 * 120.00499 * 0.02562 * 13 12 2 36 36 H 0.97004 * 120.00018 * 359.97438 * 18 16 14 37 37 H 1.09004 * 109.46587 * 299.99661 * 19 18 16 38 38 H 1.08993 * 109.47306 * 59.99553 * 19 18 16 39 39 H 1.08999 * 109.97599 * 279.65497 * 22 20 19 40 40 H 1.09001 * 109.97496 * 40.92926 * 22 20 19 41 41 H 1.08996 * 109.63123 * 193.02130 * 23 22 20 42 42 H 1.08996 * 109.28460 * 72.87443 * 23 22 20 43 43 H 1.09005 * 110.40142 * 269.03383 * 24 23 22 44 44 H 1.08994 * 110.40200 * 146.62348 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3223 -1.1193 -4.0080 9 1 3.1471 -2.2861 -3.6040 10 1 1.1675 -1.5863 -4.8166 11 1 3.1470 -0.1856 -4.8162 12 6 2.0400 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4453 14 6 1.8770 -0.4916 3.6694 15 8 2.5747 -1.4783 3.7807 16 6 1.3785 0.2126 4.8898 17 8 0.6805 1.1989 4.7785 18 7 1.6992 -0.2514 6.1138 19 6 1.2100 0.4385 7.3101 20 6 1.7137 -0.2874 8.5592 21 1 2.8032 -0.3146 8.5772 22 6 1.1564 0.3762 9.8460 23 6 1.2757 -0.6673 10.9728 24 6 0.7382 -2.0214 10.4653 25 16 1.0161 -1.9815 8.6560 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 0.7088 1.1617 -3.4843 33 1 3.1300 -0.7217 1.2489 34 1 1.6766 -1.7490 1.2491 35 1 0.9938 0.7577 2.3564 36 1 2.2533 -1.0426 6.2027 37 1 1.5770 1.4649 7.3130 38 1 0.1201 0.4423 7.3071 39 1 1.7412 1.2628 10.0910 40 1 0.1106 0.6478 9.7019 41 1 0.6940 -0.3429 11.8355 42 1 2.3228 -0.7726 11.2564 43 1 -0.3256 -2.1141 10.6843 44 1 1.2929 -2.8438 10.9169 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422339490.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:54 Heat of formation + Delta-G solvation = -105.018315 kcal Electronic energy + Delta-G solvation = -23784.736843 eV Core-core repulsion = 20247.904184 eV Total energy + Delta-G solvation = -3536.832659 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.73207 -39.82833 -38.20592 -37.69673 -35.88605 -34.95028 -32.75259 -31.68049 -28.26250 -27.59113 -27.41573 -26.94553 -24.94192 -23.42571 -22.09480 -21.23863 -20.70681 -19.71232 -18.04727 -17.92916 -17.70661 -17.13176 -16.87146 -16.55612 -16.42717 -15.81911 -15.72800 -15.13035 -15.02857 -14.83138 -14.74003 -14.33436 -14.05172 -13.83945 -13.32941 -13.22267 -13.14405 -12.84710 -12.71490 -12.65927 -12.56279 -12.50775 -12.29644 -12.28261 -12.12063 -11.73678 -11.51416 -11.30992 -10.89804 -10.78004 -10.65096 -10.41914 -10.35168 -10.13425 -8.76033 -8.01751 -6.18090 0.32011 0.74591 1.33104 1.41904 1.43023 1.47361 1.56747 2.12417 2.45051 2.67268 3.22055 3.41899 3.45421 3.62428 3.88949 4.04865 4.09252 4.30177 4.33866 4.46237 4.47559 4.56521 4.67299 4.75974 4.81312 4.91749 4.97992 4.99394 5.03581 5.05121 5.06574 5.16731 5.20265 5.20877 5.47455 5.64381 5.67627 5.87970 6.10883 6.18444 6.33962 6.41028 6.68767 6.85758 6.94430 7.49806 8.97754 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.038906 B = 0.002275 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.508046 B =12302.263052 C =12650.567634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.049 3.951 3 C -0.123 4.123 4 C -0.524 4.524 5 H 0.051 0.949 6 C 0.025 3.975 7 N -0.901 5.901 8 Si 0.949 3.051 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.143 3.857 13 N -0.680 5.680 14 C 0.496 3.504 15 O -0.552 6.552 16 C 0.516 3.484 17 O -0.538 6.538 18 N -0.689 5.689 19 C 0.134 3.866 20 C -0.042 4.042 21 H 0.116 0.884 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.063 4.063 25 S -0.357 6.357 26 H 0.030 0.970 27 H 0.064 0.936 28 H 0.022 0.978 29 H 0.024 0.976 30 H 0.064 0.936 31 H 0.030 0.970 32 H 0.260 0.740 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.414 0.586 36 H 0.416 0.584 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.275 0.581 28.544 28.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.049 3.951 3 C -0.181 4.181 4 C -0.563 4.563 5 H 0.069 0.931 6 C -0.175 4.175 7 N -0.540 5.540 8 Si 0.776 3.224 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.020 3.980 13 N -0.332 5.332 14 C 0.277 3.723 15 O -0.431 6.431 16 C 0.296 3.704 17 O -0.416 6.416 18 N -0.342 5.342 19 C 0.011 3.989 20 C -0.170 4.170 21 H 0.134 0.866 22 C -0.157 4.157 23 C -0.162 4.162 24 C -0.211 4.211 25 S -0.132 6.132 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.252 0.748 36 H 0.253 0.747 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.130 0.870 40 H 0.102 0.898 41 H 0.124 0.876 42 H 0.102 0.898 43 H 0.116 0.884 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.020 -0.128 27.566 27.567 hybrid contribution 0.446 0.111 -0.494 0.675 sum 0.426 -0.016 27.072 27.075 Atomic orbital electron populations 1.21709 0.97353 0.98884 1.00245 1.18399 0.93160 0.93104 0.90476 1.21702 0.98255 0.97916 1.00256 1.21258 1.31676 1.12197 0.91132 0.93102 1.25506 0.95161 0.95609 1.01177 1.69931 1.37065 1.23383 1.23584 0.85644 0.78043 0.78705 0.80024 1.19696 1.20911 1.20829 1.21555 0.97960 0.95456 0.83026 1.46053 1.50741 1.31441 1.04946 1.20359 0.81730 0.84895 0.85363 1.90722 1.38591 1.26707 1.87101 1.19936 0.81092 0.84366 0.84996 1.90748 1.37539 1.26270 1.86993 1.45754 1.52267 1.31686 1.04496 1.21552 1.00195 0.96477 0.80705 1.24357 1.03543 0.91459 0.97656 0.86551 1.22677 1.03174 0.99696 0.90105 1.22347 1.03378 0.91266 0.99210 1.24120 1.05431 1.02054 0.89475 1.88335 1.84238 1.24763 1.15878 0.95148 0.91717 0.95835 0.95702 0.91746 0.95099 0.93042 0.92663 0.92888 0.74850 0.74686 0.88187 0.90392 0.87007 0.89788 0.87621 0.89794 0.88380 0.87933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.08 71.98 0.58 -5.16 16 2 C 0.05 2.32 0.50 -52.93 -0.03 2.29 16 3 C -0.12 -5.67 8.08 71.98 0.58 -5.08 16 4 C -0.52 -27.58 8.01 25.60 0.21 -27.37 16 5 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 6 C 0.03 1.33 5.15 84.65 0.44 1.76 16 7 N -0.90 -48.62 9.35 21.45 0.20 -48.42 16 8 Si 0.95 42.65 29.54 68.60 2.03 44.68 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 C 0.14 6.07 4.50 86.38 0.39 6.46 16 13 N -0.68 -25.42 4.95 -464.41 -2.30 -27.72 16 14 C 0.50 17.67 7.89 87.27 0.69 18.35 16 15 O -0.55 -21.72 16.48 -3.26 -0.05 -21.78 16 16 C 0.52 15.72 7.89 87.27 0.69 16.40 16 17 O -0.54 -18.08 16.48 -3.22 -0.05 -18.13 16 18 N -0.69 -16.19 5.36 -464.41 -2.49 -18.68 16 19 C 0.13 2.26 5.21 86.38 0.45 2.71 16 20 C -0.04 -0.51 3.29 31.33 0.10 -0.40 16 21 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 22 C -0.12 -0.76 5.92 31.68 0.19 -0.57 16 23 C -0.12 -0.63 6.38 31.38 0.20 -0.43 16 24 C -0.06 -0.60 7.34 72.41 0.53 -0.07 16 25 S -0.36 -6.35 22.31 -56.49 -1.26 -7.61 16 26 H 0.03 1.23 6.86 -2.39 -0.02 1.21 16 27 H 0.06 3.30 6.07 -2.38 -0.01 3.29 16 28 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 31 H 0.03 1.24 6.86 -2.39 -0.02 1.22 16 32 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 33 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.41 15.00 5.63 -92.71 -0.52 14.48 16 36 H 0.42 9.73 7.71 -92.71 -0.72 9.01 16 37 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.08 0.59 8.08 -2.39 -0.02 0.57 16 41 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -62.91 365.08 0.86 -62.05 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -0.22 Total: 26.70 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 5.02 Total: 8.91 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -4.59 Total: -94.81 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -0.11 Total: -39.91 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: -6.35 SS G_CDS: -1.26 Total: -7.61 kcal Total: -62.91 0.86 -62.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422339490.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.971 kcal (2) G-P(sol) polarization free energy of solvation -62.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds