Wall clock time and date at job start Tue Mar 31 2020 11:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47211 * 2 1 4 4 C 1.52994 * 109.46887 * 239.99576 * 2 1 3 5 5 N 1.46504 * 109.46833 * 119.99955 * 2 1 3 6 6 C 1.34821 * 126.59367 * 74.99815 * 5 2 1 7 7 C 1.36611 * 106.83954 * 180.02562 * 6 5 2 8 8 C 1.47490 * 125.77505 * 179.97438 * 7 6 5 9 9 O 1.21607 * 120.00208 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00184 * 180.02562 * 8 7 6 11 11 C 1.39875 * 120.00351 * 185.09799 * 10 8 7 12 12 C 1.39301 * 119.94921 * 33.32377 * 11 10 8 13 13 C 1.38481 * 120.42855 * 180.26117 * 12 11 10 14 14 C 1.37685 * 120.32264 * 359.44789 * 13 12 11 15 15 C 1.40751 * 119.88645 * 0.27417 * 14 13 12 16 16 C 1.41410 * 120.20763 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00515 * 29.19766 * 16 15 14 18 18 C 1.39937 * 119.99692 * 209.20373 * 16 15 14 19 19 N 1.30832 * 120.00062 * 15.61569 * 18 16 15 20 20 Si 1.86794 * 119.99690 * 195.61615 * 18 16 15 21 21 H 1.48502 * 109.47173 * 90.00265 * 20 18 16 22 22 H 1.48499 * 109.47005 * 209.99853 * 20 18 16 23 23 H 1.48501 * 109.47564 * 329.99770 * 20 18 16 24 24 C 1.38254 * 119.94829 * 213.03522 * 11 10 8 25 25 N 1.34409 * 108.45033 * 0.24820 * 7 6 5 26 26 N 1.28760 * 109.52485 * 359.58128 * 25 7 6 27 27 H 1.09007 * 109.46728 * 300.00256 * 1 2 3 28 28 H 1.08995 * 109.46677 * 59.99538 * 1 2 3 29 29 H 1.08994 * 109.47371 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46853 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47217 * 299.99620 * 3 2 1 32 32 H 1.09000 * 109.47101 * 60.00295 * 3 2 1 33 33 H 1.08999 * 109.47902 * 300.00316 * 4 2 1 34 34 H 1.09002 * 109.47197 * 60.00439 * 4 2 1 35 35 H 1.09007 * 109.47228 * 180.02562 * 4 2 1 36 36 H 1.08003 * 126.58035 * 359.97438 * 6 5 2 37 37 H 0.97004 * 119.99815 * 5.09413 * 10 8 7 38 38 H 1.08009 * 119.78529 * 0.02562 * 12 11 10 39 39 H 1.07996 * 119.84343 * 179.72671 * 13 12 11 40 40 H 1.07999 * 120.05922 * 180.25689 * 14 13 12 41 41 H 0.96996 * 119.99908 * 179.97438 * 19 18 16 42 42 H 1.08006 * 120.16420 * 0.03973 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0220 -2.0217 1.4106 7 6 2.5627 -2.2216 2.6491 8 6 2.7635 -3.5290 3.3015 9 8 2.4364 -4.5509 2.7290 10 7 3.3097 -3.5914 4.5320 11 6 3.5986 -4.8334 5.1069 12 6 3.9968 -5.8972 4.3006 13 6 4.2801 -7.1325 4.8587 14 6 4.1820 -7.3196 6.2192 15 6 3.7864 -6.2524 7.0472 16 6 3.6829 -6.4371 8.4454 17 1 4.3104 -7.1622 8.9423 18 6 2.7671 -5.6806 9.1851 19 7 1.8065 -5.0359 8.5742 20 14 2.9164 -5.5911 11.0450 21 1 3.7852 -4.4457 11.4173 22 1 1.5692 -5.4047 11.6413 23 1 3.5134 -6.8516 11.5549 24 6 3.4942 -5.0016 6.4752 25 7 2.8751 -1.0248 3.1751 26 7 2.5710 -0.0944 2.3385 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9562 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 -1.7490 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7218 -1.2490 36 1 1.6652 -2.7837 0.7334 37 1 3.5024 -2.7749 5.0190 38 1 4.0815 -5.7587 3.2328 39 1 4.5837 -7.9520 4.2242 40 1 4.4079 -8.2837 6.6504 41 1 1.1715 -4.5118 9.0870 42 1 3.1894 -4.1763 7.1018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456761642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:52 Heat of formation + Delta-G solvation = 74.888771 kcal Electronic energy + Delta-G solvation = -25061.235234 eV Core-core repulsion = 21429.052732 eV Total energy + Delta-G solvation = -3632.182502 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.30081 -39.40559 -37.69460 -37.03790 -34.23069 -33.22057 -32.10971 -30.93644 -29.49111 -28.39220 -28.01744 -27.84956 -25.18467 -24.01716 -23.46605 -21.25435 -20.92095 -20.49816 -19.32550 -17.70082 -17.30710 -16.47080 -16.17221 -15.58447 -15.07673 -14.80158 -14.70974 -14.63677 -14.52040 -14.03521 -13.88098 -13.12938 -13.03733 -12.91285 -12.79505 -12.68441 -12.38137 -12.30370 -12.25339 -11.89703 -11.70345 -11.56373 -11.21592 -11.19555 -11.04685 -10.73055 -10.43980 -10.41635 -10.03627 -9.85059 -9.46111 -9.27419 -9.19722 -8.88410 -7.30406 -6.89985 -6.64949 -4.31688 1.12010 1.79767 1.84844 2.81889 2.95651 3.12782 3.16023 3.27036 3.59920 3.75294 3.91490 4.00197 4.12802 4.22421 4.25246 4.71858 4.75435 4.84668 4.90943 5.01003 5.09005 5.10922 5.14934 5.23550 5.29351 5.45852 5.59772 5.67818 5.72284 5.88835 6.30530 6.33203 6.67189 6.73679 6.94021 7.09442 7.12244 7.29704 7.64179 7.71798 7.93120 7.97954 8.07369 8.21805 8.38267 8.59410 8.78925 8.94965 9.00695 10.29325 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.021308 B = 0.002842 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.726951 B = 9850.546531 C =10740.124288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.170 3.830 3 C -0.148 4.148 4 C -0.163 4.163 5 N -0.354 5.354 6 C 0.090 3.910 7 C -0.092 4.092 8 C 0.596 3.404 9 O -0.525 6.525 10 N -0.646 5.646 11 C 0.145 3.855 12 C -0.224 4.224 13 C -0.087 4.087 14 C -0.224 4.224 15 C 0.123 3.877 16 C -0.468 4.468 17 H 0.078 0.922 18 C 0.076 3.924 19 N -0.799 5.799 20 Si 0.907 3.093 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.263 1.263 24 C -0.175 4.175 25 N -0.206 5.206 26 N -0.067 5.067 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.201 0.799 37 H 0.408 0.592 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.279 0.721 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 12.640 -17.286 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.087 3.913 3 C -0.206 4.206 4 C -0.221 4.221 5 N -0.141 5.141 6 C -0.066 4.066 7 C -0.231 4.231 8 C 0.380 3.620 9 O -0.400 6.400 10 N -0.288 5.288 11 C 0.053 3.947 12 C -0.245 4.245 13 C -0.106 4.106 14 C -0.244 4.244 15 C 0.120 3.880 16 C -0.499 4.499 17 H 0.096 0.904 18 C -0.141 4.141 19 N -0.425 5.425 20 Si 0.732 3.268 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.187 1.187 24 C -0.197 4.197 25 N -0.079 5.079 26 N -0.046 5.046 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.217 0.783 37 H 0.244 0.756 38 H 0.121 0.879 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.090 0.910 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.623 13.427 -17.025 21.841 hybrid contribution -0.419 -0.369 0.520 0.763 sum -3.042 13.058 -16.505 21.265 Atomic orbital electron populations 1.22294 0.91912 1.03789 1.03986 1.21064 0.95183 0.94080 0.80934 1.21986 1.02557 0.92290 1.03757 1.22301 1.02721 1.01367 0.95741 1.50788 1.42520 1.05221 1.15521 1.23215 0.98499 0.86852 0.98068 1.21601 1.12187 0.93801 0.95551 1.16755 0.77873 0.85674 0.81679 1.90808 1.50631 1.34116 1.64458 1.43215 1.60064 1.09144 1.16394 1.17600 1.00339 0.84064 0.92680 1.20325 1.12324 0.93750 0.98127 1.20420 0.99980 0.95458 0.94756 1.21076 1.12450 0.98035 0.92863 1.17354 0.87994 0.89570 0.93104 1.19496 1.18722 1.19526 0.92108 0.90350 1.25865 0.93717 0.93555 1.00938 1.69826 1.10536 1.23950 1.38160 0.86334 0.78249 0.79726 0.82486 1.19375 1.20475 1.18715 1.20994 1.08692 0.98812 0.91153 1.74663 1.12981 0.98066 1.22229 1.81919 1.15926 1.17112 0.89680 0.91185 0.89708 0.91282 0.91223 0.90219 0.90612 0.91055 0.89468 0.91116 0.78258 0.75622 0.87907 0.88969 0.88793 0.91036 0.86344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 8.74 37.16 0.32 -0.59 16 2 C 0.17 1.17 1.25 -131.82 -0.16 1.01 16 3 C -0.15 -0.91 8.11 37.16 0.30 -0.61 16 4 C -0.16 -0.81 8.30 37.15 0.31 -0.50 16 5 N -0.35 -3.90 3.44 -48.35 -0.17 -4.07 16 6 C 0.09 1.12 10.43 -16.83 -0.18 0.95 16 7 C -0.09 -1.49 6.99 -83.56 -0.58 -2.08 16 8 C 0.60 11.80 7.55 -12.49 -0.09 11.70 16 9 O -0.52 -11.58 14.53 5.27 0.08 -11.50 16 10 N -0.65 -13.53 5.33 -10.86 -0.06 -13.59 16 11 C 0.14 3.53 6.27 -83.79 -0.53 3.01 16 12 C -0.22 -5.43 8.66 -39.10 -0.34 -5.77 16 13 C -0.09 -2.07 10.02 -39.69 -0.40 -2.46 16 14 C -0.22 -5.65 9.79 -38.83 -0.38 -6.03 16 15 C 0.12 3.33 5.52 -106.85 -0.59 2.74 16 16 C -0.47 -12.57 9.04 -37.74 -0.34 -12.91 16 17 H 0.08 2.02 7.89 -52.49 -0.41 1.60 16 18 C 0.08 1.95 5.15 -17.34 -0.09 1.86 16 19 N -0.80 -21.17 11.15 55.55 0.62 -20.55 16 20 Si 0.91 19.05 29.59 -169.99 -5.03 14.02 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 24 C -0.18 -4.60 8.57 -38.68 -0.33 -4.93 16 25 N -0.21 -3.36 12.04 32.84 0.40 -2.96 16 26 N -0.07 -0.95 12.91 60.35 0.78 -0.17 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 33 H 0.07 0.34 7.44 -51.93 -0.39 -0.05 16 34 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.20 1.92 7.63 -52.48 -0.40 1.52 16 37 H 0.41 7.77 8.51 -40.82 -0.35 7.43 16 38 H 0.10 2.43 6.39 -52.48 -0.34 2.09 16 39 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 42 H 0.12 3.18 6.44 -52.48 -0.34 2.84 16 LS Contribution 358.46 15.07 5.40 5.40 Total: -1.00 -32.09 358.46 -6.64 -38.73 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -5.58 Total: 9.32 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -3.08 Total: -14.63 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 1.57 Total: -41.34 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.09 -6.64 -38.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456761642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.620 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds