Wall clock time and date at job start Tue Mar 31 2020 11:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47211 * 2 1 4 4 C 1.52994 * 109.46887 * 239.99576 * 2 1 3 5 5 N 1.46504 * 109.46833 * 119.99955 * 2 1 3 6 6 C 1.34821 * 126.59367 * 74.99815 * 5 2 1 7 7 C 1.36611 * 106.83954 * 180.02562 * 6 5 2 8 8 C 1.47490 * 125.77505 * 179.97438 * 7 6 5 9 9 O 1.21607 * 120.00208 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00184 * 180.02562 * 8 7 6 11 11 C 1.39875 * 120.00351 * 185.09799 * 10 8 7 12 12 C 1.39301 * 119.94921 * 33.32377 * 11 10 8 13 13 C 1.38481 * 120.42855 * 180.26117 * 12 11 10 14 14 C 1.37685 * 120.32264 * 359.44789 * 13 12 11 15 15 C 1.40751 * 119.88645 * 0.27417 * 14 13 12 16 16 C 1.41410 * 120.20763 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00515 * 29.19766 * 16 15 14 18 18 C 1.39937 * 119.99692 * 209.20373 * 16 15 14 19 19 N 1.30832 * 120.00062 * 15.61569 * 18 16 15 20 20 Si 1.86794 * 119.99690 * 195.61615 * 18 16 15 21 21 H 1.48502 * 109.47173 * 90.00265 * 20 18 16 22 22 H 1.48499 * 109.47005 * 209.99853 * 20 18 16 23 23 H 1.48501 * 109.47564 * 329.99770 * 20 18 16 24 24 C 1.38254 * 119.94829 * 213.03522 * 11 10 8 25 25 N 1.34409 * 108.45033 * 0.24820 * 7 6 5 26 26 N 1.28760 * 109.52485 * 359.58128 * 25 7 6 27 27 H 1.09007 * 109.46728 * 300.00256 * 1 2 3 28 28 H 1.08995 * 109.46677 * 59.99538 * 1 2 3 29 29 H 1.08994 * 109.47371 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46853 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47217 * 299.99620 * 3 2 1 32 32 H 1.09000 * 109.47101 * 60.00295 * 3 2 1 33 33 H 1.08999 * 109.47902 * 300.00316 * 4 2 1 34 34 H 1.09002 * 109.47197 * 60.00439 * 4 2 1 35 35 H 1.09007 * 109.47228 * 180.02562 * 4 2 1 36 36 H 1.08003 * 126.58035 * 359.97438 * 6 5 2 37 37 H 0.97004 * 119.99815 * 5.09413 * 10 8 7 38 38 H 1.08009 * 119.78529 * 0.02562 * 12 11 10 39 39 H 1.07996 * 119.84343 * 179.72671 * 13 12 11 40 40 H 1.07999 * 120.05922 * 180.25689 * 14 13 12 41 41 H 0.96996 * 119.99908 * 179.97438 * 19 18 16 42 42 H 1.08006 * 120.16420 * 0.03973 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0220 -2.0217 1.4106 7 6 2.5627 -2.2216 2.6491 8 6 2.7635 -3.5290 3.3015 9 8 2.4364 -4.5509 2.7290 10 7 3.3097 -3.5914 4.5320 11 6 3.5986 -4.8334 5.1069 12 6 3.9968 -5.8972 4.3006 13 6 4.2801 -7.1325 4.8587 14 6 4.1820 -7.3196 6.2192 15 6 3.7864 -6.2524 7.0472 16 6 3.6829 -6.4371 8.4454 17 1 4.3104 -7.1622 8.9423 18 6 2.7671 -5.6806 9.1851 19 7 1.8065 -5.0359 8.5742 20 14 2.9164 -5.5911 11.0450 21 1 3.7852 -4.4457 11.4173 22 1 1.5692 -5.4047 11.6413 23 1 3.5134 -6.8516 11.5549 24 6 3.4942 -5.0016 6.4752 25 7 2.8751 -1.0248 3.1751 26 7 2.5710 -0.0944 2.3385 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9562 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 -1.7490 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7218 -1.2490 36 1 1.6652 -2.7837 0.7334 37 1 3.5024 -2.7749 5.0190 38 1 4.0815 -5.7587 3.2328 39 1 4.5837 -7.9520 4.2242 40 1 4.4079 -8.2837 6.6504 41 1 1.1715 -4.5118 9.0870 42 1 3.1894 -4.1763 7.1018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456761642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:51 Heat of formation + Delta-G solvation = 54.752731 kcal Electronic energy + Delta-G solvation = -25062.108398 eV Core-core repulsion = 21429.052732 eV Total energy + Delta-G solvation = -3633.055666 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.38196 -41.05963 -38.97196 -38.30210 -36.02903 -35.08865 -33.06850 -32.18285 -31.43770 -30.06358 -28.44917 -28.42530 -27.16323 -25.16717 -24.67154 -23.12678 -22.41890 -21.72023 -20.78409 -19.20268 -18.82353 -17.66419 -17.28102 -17.17201 -16.72938 -16.53162 -15.93949 -15.76811 -15.62027 -15.09266 -15.03451 -14.75305 -14.53561 -14.15722 -13.68277 -13.62450 -13.40083 -13.35639 -13.19544 -12.99717 -12.79982 -12.78363 -12.61631 -12.46973 -12.38155 -12.21995 -11.99095 -11.86925 -11.71714 -11.30961 -11.25071 -11.06401 -10.73367 -10.41124 -9.29585 -8.79886 -8.57066 -6.35394 0.07677 0.43809 0.97961 1.01508 1.08997 1.40461 1.53150 1.54130 2.11950 2.20925 2.24036 2.78892 3.09344 3.22481 3.63649 3.66484 3.73391 3.76140 3.87829 4.14426 4.41774 4.52320 4.57207 4.59263 4.67128 4.72028 4.73510 4.78899 4.80151 4.86016 5.06975 5.08816 5.14836 5.18884 5.20616 5.26173 5.34488 5.51925 5.76941 5.83885 6.01969 6.08858 6.31181 6.49527 6.69728 6.85866 6.95567 6.98332 7.14545 8.38453 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.021308 B = 0.002842 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.726951 B = 9850.546531 C =10740.124288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.157 3.843 3 C -0.147 4.147 4 C -0.161 4.161 5 N -0.336 5.336 6 C 0.113 3.887 7 C -0.121 4.121 8 C 0.599 3.401 9 O -0.550 6.550 10 N -0.649 5.649 11 C 0.148 3.852 12 C -0.233 4.233 13 C -0.083 4.083 14 C -0.241 4.241 15 C 0.094 3.906 16 C -0.500 4.500 17 H 0.080 0.920 18 C 0.035 3.965 19 N -0.831 5.831 20 Si 0.983 3.017 21 H -0.262 1.262 22 H -0.271 1.271 23 H -0.257 1.257 24 C -0.197 4.197 25 N -0.230 5.230 26 N -0.078 5.078 27 H 0.053 0.947 28 H 0.116 0.884 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.113 0.887 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.117 0.883 35 H 0.060 0.940 36 H 0.231 0.769 37 H 0.415 0.585 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.105 0.895 41 H 0.286 0.714 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.232 13.385 -19.113 23.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.077 3.923 3 C -0.205 4.205 4 C -0.219 4.219 5 N -0.122 5.122 6 C -0.046 4.046 7 C -0.260 4.260 8 C 0.386 3.614 9 O -0.427 6.427 10 N -0.292 5.292 11 C 0.055 3.945 12 C -0.254 4.254 13 C -0.101 4.101 14 C -0.260 4.260 15 C 0.091 3.909 16 C -0.530 4.530 17 H 0.098 0.902 18 C -0.180 4.180 19 N -0.458 5.458 20 Si 0.804 3.196 21 H -0.187 1.187 22 H -0.196 1.196 23 H -0.180 1.180 24 C -0.219 4.219 25 N -0.103 5.103 26 N -0.058 5.058 27 H 0.072 0.928 28 H 0.135 0.865 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.131 0.869 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.136 0.864 35 H 0.080 0.920 36 H 0.247 0.753 37 H 0.251 0.749 38 H 0.128 0.872 39 H 0.144 0.856 40 H 0.124 0.876 41 H 0.096 0.904 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.297 14.217 -18.887 23.868 hybrid contribution -0.263 -0.511 0.876 1.047 sum -3.559 13.706 -18.011 22.911 Atomic orbital electron populations 1.22330 0.90461 1.04124 1.04799 1.21661 0.96247 0.94453 0.79948 1.22028 1.01864 0.91913 1.04672 1.22355 1.02170 1.01864 0.95492 1.51219 1.40548 1.04878 1.15597 1.23581 0.96277 0.87882 0.96834 1.21229 1.15287 0.92373 0.97131 1.17131 0.76584 0.86842 0.80842 1.90771 1.51648 1.35466 1.64860 1.43227 1.60550 1.08301 1.17129 1.17697 0.99102 0.85456 0.92257 1.20538 1.12352 0.94037 0.98443 1.20771 0.98533 0.96242 0.94597 1.21280 1.13007 0.98181 0.93574 1.17758 0.88680 0.90429 0.93994 1.19773 1.19754 1.20840 0.92620 0.90187 1.26749 0.92719 0.92540 1.05943 1.69896 1.11174 1.24424 1.40276 0.85186 0.78517 0.79940 0.75935 1.18718 1.19603 1.18037 1.20910 1.10576 0.98464 0.91949 1.74641 1.13975 0.98314 1.23410 1.81836 1.16346 1.16987 0.90610 0.92776 0.86510 0.91199 0.92333 0.86890 0.92127 0.90498 0.86430 0.92047 0.75251 0.74902 0.87203 0.85609 0.87648 0.90404 0.87826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 8.74 71.98 0.63 -0.69 16 2 C 0.16 1.75 1.25 3.60 0.00 1.76 16 3 C -0.15 -1.47 8.11 71.98 0.58 -0.89 16 4 C -0.16 -1.04 8.30 71.98 0.60 -0.44 16 5 N -0.34 -6.91 3.44 -306.88 -1.06 -7.97 16 6 C 0.11 2.63 10.43 83.85 0.87 3.50 16 7 C -0.12 -3.90 6.99 40.81 0.29 -3.62 16 8 C 0.60 24.03 7.55 86.68 0.65 24.68 16 9 O -0.55 -24.30 14.53 -4.05 -0.06 -24.36 16 10 N -0.65 -28.05 5.33 -306.53 -1.63 -29.68 16 11 C 0.15 7.40 6.27 38.12 0.24 7.64 16 12 C -0.23 -11.32 8.66 22.58 0.20 -11.13 16 13 C -0.08 -3.89 10.02 22.20 0.22 -3.67 16 14 C -0.24 -12.28 9.79 22.75 0.22 -12.05 16 15 C 0.09 5.27 5.52 -21.31 -0.12 5.15 16 16 C -0.50 -27.54 9.04 23.46 0.21 -27.33 16 17 H 0.08 4.22 7.89 -2.91 -0.02 4.19 16 18 C 0.03 1.79 5.15 85.25 0.44 2.23 16 19 N -0.83 -45.18 11.15 21.83 0.24 -44.94 16 20 Si 0.98 39.32 29.59 68.60 2.03 41.35 16 21 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 22 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 23 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 24 C -0.20 -10.79 8.57 22.85 0.20 -10.60 16 25 N -0.23 -7.60 12.04 -50.01 -0.60 -8.20 16 26 N -0.08 -2.19 12.91 37.02 0.48 -1.72 16 27 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.06 0.81 8.06 -2.39 -0.02 0.79 16 33 H 0.08 0.45 7.44 -2.39 -0.02 0.43 16 34 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.23 3.81 7.63 -2.91 -0.02 3.78 16 37 H 0.41 16.55 8.51 -92.71 -0.79 15.76 16 38 H 0.11 5.16 6.39 -2.91 -0.02 5.14 16 39 H 0.13 4.96 8.06 -2.91 -0.02 4.93 16 40 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 41 H 0.29 14.14 8.30 -92.71 -0.77 13.38 16 42 H 0.10 5.86 6.44 -2.91 -0.02 5.85 16 Total: -1.00 -71.91 358.46 4.90 -67.01 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 0.26 Total: 33.96 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 5.24 Total: -25.45 kcal Atomic # 7 Polarization: -89.94 SS G_CDS: -2.57 Total: -92.51 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.06 Total: -24.36 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -71.91 4.90 -67.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456761642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.761 kcal (2) G-P(sol) polarization free energy of solvation -71.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds