Wall clock time and date at job start Tue Mar 31 2020 11:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99740 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00324 * 4 2 1 6 6 C 1.37875 * 120.00046 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.46866 * 90.00390 * 8 6 4 10 10 H 1.48502 * 109.47245 * 210.00175 * 8 6 4 11 11 H 1.48494 * 109.47271 * 330.00312 * 8 6 4 12 12 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 13 13 N 1.46504 * 109.46883 * 300.00241 * 12 2 1 14 14 C 1.34775 * 119.99531 * 179.97438 * 13 12 2 15 15 O 1.21552 * 120.00294 * 0.02562 * 14 13 12 16 16 C 1.47862 * 120.00030 * 179.97438 * 14 13 12 17 17 C 1.39623 * 120.11076 * 0.02562 * 16 14 13 18 18 C 1.37971 * 119.98366 * 179.97438 * 17 16 14 19 19 C 1.38262 * 120.21584 * 359.97438 * 18 17 16 20 20 C 1.38907 * 120.22908 * 0.02562 * 19 18 17 21 21 N 1.40275 * 119.99419 * 179.97438 * 20 19 18 22 22 C 1.36118 * 125.94075 * 4.71700 * 21 20 19 23 23 C 1.35370 * 106.04893 * 179.84824 * 22 21 20 24 24 N 1.33774 * 106.53659 * 0.40193 * 23 22 21 25 25 N 1.28605 * 109.06032 * 359.74404 * 24 23 22 26 26 C 1.38585 * 120.01037 * 359.69625 * 20 19 18 27 27 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 28 28 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 29 29 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 32 32 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 33 33 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47002 * 59.99738 * 12 2 1 35 35 H 1.08993 * 109.46955 * 180.02562 * 12 2 1 36 36 H 0.96992 * 119.99966 * 359.97438 * 13 12 2 37 37 H 1.08003 * 120.00550 * 359.97438 * 17 16 14 38 38 H 1.07999 * 119.88805 * 179.97438 * 18 17 16 39 39 H 1.08000 * 119.88506 * 179.97438 * 19 18 17 40 40 H 1.08003 * 126.97212 * 359.97438 * 22 21 20 41 41 H 1.07996 * 126.73178 * 180.14584 * 23 22 21 42 42 H 1.07994 * 120.10386 * 180.27861 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.3427 -2.1620 -4.4117 10 1 2.4866 -0.1417 -5.1122 11 1 3.6293 -1.7585 -3.7120 12 6 2.0400 -0.7212 1.2494 13 7 1.5516 -0.0304 2.4455 14 6 1.8768 -0.4911 3.6696 15 8 2.5756 -1.4794 3.7812 16 6 1.3844 0.2063 4.8768 17 6 0.5819 1.3419 4.7514 18 6 0.1234 1.9903 5.8797 19 6 0.4555 1.5190 7.1363 20 6 1.2533 0.3899 7.2715 21 7 1.5876 -0.0837 8.5488 22 6 1.1267 0.4110 9.7302 23 6 1.6996 -0.3405 10.6996 24 7 2.4756 -1.2359 10.0785 25 7 2.3878 -1.0581 8.8079 26 6 1.7142 -0.2721 6.1446 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 0.7095 1.1615 -3.4844 34 1 1.6766 -1.7488 1.2494 35 1 3.1299 -0.7208 1.2495 36 1 0.9942 0.7583 2.3564 37 1 0.3202 1.7127 3.7714 38 1 -0.4968 2.8689 5.7808 39 1 0.0940 2.0309 8.0159 40 1 0.4413 1.2345 9.8665 41 1 1.5610 -0.2349 11.7654 42 1 2.3308 -1.1526 6.2479 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457988558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:42 Heat of formation + Delta-G solvation = 95.036861 kcal Electronic energy + Delta-G solvation = -25020.991394 eV Core-core repulsion = 21389.682579 eV Total energy + Delta-G solvation = -3631.308815 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.73032 -40.31281 -38.65837 -36.44509 -34.98388 -33.43201 -32.06853 -31.25999 -30.87004 -30.10349 -26.02275 -25.80633 -25.27541 -24.69326 -23.92144 -22.48682 -21.64516 -20.42110 -19.18098 -18.76260 -16.98063 -16.79492 -16.70936 -15.92316 -15.83636 -15.33821 -14.94695 -14.81732 -14.66318 -14.47148 -14.15526 -13.47830 -13.45006 -12.98874 -12.77126 -12.44821 -12.30311 -12.19442 -11.70122 -11.48778 -11.32188 -11.29724 -11.25050 -10.91857 -10.73932 -10.46378 -10.25929 -9.82387 -9.81270 -9.71604 -9.48577 -9.37278 -9.04384 -8.86159 -8.55642 -8.39766 -6.07478 -4.17452 0.14481 0.60023 1.57212 1.87736 2.23247 2.79203 3.25560 3.32701 3.35522 3.44423 3.62749 3.96568 4.18410 4.33184 4.36878 4.57067 4.65753 4.68565 4.77243 4.85531 5.05311 5.19705 5.20931 5.44037 5.67081 5.80495 5.85475 5.88057 6.06754 6.17082 6.24278 6.42010 6.47111 6.67164 6.72590 6.84212 6.88302 6.94017 7.27256 7.48012 7.63888 7.87304 7.93926 8.07004 8.12881 8.31335 8.49133 8.83049 9.48741 10.94052 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.034659 B = 0.002466 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.668181 B =11349.505688 C =11965.070523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.130 3.870 13 N -0.706 5.706 14 C 0.545 3.455 15 O -0.538 6.538 16 C -0.102 4.102 17 C -0.077 4.077 18 C -0.103 4.103 19 C -0.099 4.099 20 C 0.108 3.892 21 N -0.239 5.239 22 C -0.051 4.051 23 C -0.045 4.045 24 N -0.264 5.264 25 N -0.072 5.072 26 C -0.045 4.045 27 H 0.005 0.995 28 H 0.087 0.913 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.087 0.913 32 H 0.005 0.995 33 H 0.260 0.740 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.398 0.602 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.138 0.862 40 H 0.194 0.806 41 H 0.195 0.805 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.498 7.187 20.628 22.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.357 5.357 14 C 0.330 3.670 15 O -0.417 6.417 16 C -0.106 4.106 17 C -0.096 4.096 18 C -0.121 4.121 19 C -0.120 4.120 20 C 0.017 3.983 21 N -0.027 5.027 22 C -0.199 4.199 23 C -0.201 4.201 24 N -0.131 5.131 25 N -0.051 5.051 26 C -0.066 4.066 27 H 0.024 0.976 28 H 0.105 0.895 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.105 0.895 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.234 0.766 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.156 0.844 40 H 0.211 0.789 41 H 0.212 0.788 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.119 5.473 19.977 21.119 hybrid contribution -0.778 0.891 -0.406 1.250 sum -4.897 6.364 19.571 21.155 Atomic orbital electron populations 1.21848 0.97722 0.99309 1.00063 1.18371 0.92821 0.92792 0.90517 1.21847 0.98745 0.98292 1.00064 1.20968 1.31557 1.12141 0.89796 0.92355 1.24876 0.94833 0.94905 0.98889 1.69793 1.36687 1.22696 1.23294 0.86559 0.79362 0.79389 0.82504 1.20688 1.21254 1.19874 1.21828 0.98442 0.95945 0.82981 1.46253 1.52075 1.31573 1.05791 1.18076 0.81213 0.84431 0.83307 1.90787 1.38125 1.26066 1.86713 1.20088 0.99945 0.96849 0.93748 1.21647 0.94420 0.93486 1.00045 1.20984 1.00034 1.00397 0.90711 1.21030 0.97301 0.94247 0.99429 1.17504 1.02599 0.97299 0.80896 1.44778 1.29575 1.22307 1.06028 1.23841 1.06676 1.05241 0.84171 1.23681 0.99321 0.95697 1.01417 1.75165 1.18949 1.21184 0.97755 1.78488 1.10135 1.05142 1.11324 1.21066 0.96974 0.99413 0.89107 0.97632 0.89468 0.95308 0.95294 0.89468 0.97623 0.92966 0.92298 0.92291 0.76584 0.84163 0.83697 0.84417 0.78883 0.78785 0.82611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 2 C 0.06 1.24 0.50 -155.66 -0.08 1.16 16 3 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 4 C -0.51 -12.89 8.01 -34.44 -0.28 -13.17 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -22.95 9.35 55.43 0.52 -22.43 16 8 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 C 0.13 2.66 4.50 -4.04 -0.02 2.64 16 13 N -0.71 -11.89 4.91 -61.24 -0.30 -12.19 16 14 C 0.54 9.24 7.77 -12.32 -0.10 9.14 16 15 O -0.54 -11.17 16.34 5.32 0.09 -11.09 16 16 C -0.10 -1.34 5.87 -104.99 -0.62 -1.95 16 17 C -0.08 -0.73 9.54 -39.16 -0.37 -1.11 16 18 C -0.10 -0.72 10.02 -39.67 -0.40 -1.12 16 19 C -0.10 -0.72 9.45 -39.32 -0.37 -1.09 16 20 C 0.11 1.15 6.67 -83.62 -0.56 0.60 16 21 N -0.24 -2.70 3.56 -10.50 -0.04 -2.74 16 22 C -0.05 -0.40 10.91 -16.67 -0.18 -0.58 16 23 C -0.05 -0.40 12.05 -17.73 -0.21 -0.61 16 24 N -0.26 -3.49 12.39 30.24 0.37 -3.12 16 25 N -0.07 -1.03 12.42 60.35 0.75 -0.28 16 26 C -0.04 -0.59 9.16 -39.00 -0.36 -0.94 16 27 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 28 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 32 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 33 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.40 5.79 4.19 -40.82 -0.17 5.62 16 37 H 0.14 1.15 6.40 -52.48 -0.34 0.82 16 38 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.14 0.53 6.77 -52.49 -0.36 0.18 16 40 H 0.19 0.59 7.12 -52.48 -0.37 0.22 16 41 H 0.20 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.16 2.34 7.29 -52.49 -0.38 1.96 16 LS Contribution 347.98 15.07 5.24 5.24 Total: -1.00 -31.49 347.98 -6.45 -37.95 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.04 Total: 3.78 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -3.03 Total: -10.48 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 1.30 Total: -40.75 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.49 -6.45 -37.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457988558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.985 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds