Wall clock time and date at job start Tue Mar 31 2020 11:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99740 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00324 * 4 2 1 6 6 C 1.37875 * 120.00046 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.46866 * 90.00390 * 8 6 4 10 10 H 1.48502 * 109.47245 * 210.00175 * 8 6 4 11 11 H 1.48494 * 109.47271 * 330.00312 * 8 6 4 12 12 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 13 13 N 1.46504 * 109.46883 * 300.00241 * 12 2 1 14 14 C 1.34775 * 119.99531 * 179.97438 * 13 12 2 15 15 O 1.21552 * 120.00294 * 0.02562 * 14 13 12 16 16 C 1.47862 * 120.00030 * 179.97438 * 14 13 12 17 17 C 1.39623 * 120.11076 * 0.02562 * 16 14 13 18 18 C 1.37971 * 119.98366 * 179.97438 * 17 16 14 19 19 C 1.38262 * 120.21584 * 359.97438 * 18 17 16 20 20 C 1.38907 * 120.22908 * 0.02562 * 19 18 17 21 21 N 1.40275 * 119.99419 * 179.97438 * 20 19 18 22 22 C 1.36118 * 125.94075 * 4.71700 * 21 20 19 23 23 C 1.35370 * 106.04893 * 179.84824 * 22 21 20 24 24 N 1.33774 * 106.53659 * 0.40193 * 23 22 21 25 25 N 1.28605 * 109.06032 * 359.74404 * 24 23 22 26 26 C 1.38585 * 120.01037 * 359.69625 * 20 19 18 27 27 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 28 28 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 29 29 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 32 32 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 33 33 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47002 * 59.99738 * 12 2 1 35 35 H 1.08993 * 109.46955 * 180.02562 * 12 2 1 36 36 H 0.96992 * 119.99966 * 359.97438 * 13 12 2 37 37 H 1.08003 * 120.00550 * 359.97438 * 17 16 14 38 38 H 1.07999 * 119.88805 * 179.97438 * 18 17 16 39 39 H 1.08000 * 119.88506 * 179.97438 * 19 18 17 40 40 H 1.08003 * 126.97212 * 359.97438 * 22 21 20 41 41 H 1.07996 * 126.73178 * 180.14584 * 23 22 21 42 42 H 1.07994 * 120.10386 * 180.27861 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.3427 -2.1620 -4.4117 10 1 2.4866 -0.1417 -5.1122 11 1 3.6293 -1.7585 -3.7120 12 6 2.0400 -0.7212 1.2494 13 7 1.5516 -0.0304 2.4455 14 6 1.8768 -0.4911 3.6696 15 8 2.5756 -1.4794 3.7812 16 6 1.3844 0.2063 4.8768 17 6 0.5819 1.3419 4.7514 18 6 0.1234 1.9903 5.8797 19 6 0.4555 1.5190 7.1363 20 6 1.2533 0.3899 7.2715 21 7 1.5876 -0.0837 8.5488 22 6 1.1267 0.4110 9.7302 23 6 1.6996 -0.3405 10.6996 24 7 2.4756 -1.2359 10.0785 25 7 2.3878 -1.0581 8.8079 26 6 1.7142 -0.2721 6.1446 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 0.7095 1.1615 -3.4844 34 1 1.6766 -1.7488 1.2494 35 1 3.1299 -0.7208 1.2495 36 1 0.9942 0.7583 2.3564 37 1 0.3202 1.7127 3.7714 38 1 -0.4968 2.8689 5.7808 39 1 0.0940 2.0309 8.0159 40 1 0.4413 1.2345 9.8665 41 1 1.5610 -0.2349 11.7654 42 1 2.3308 -1.1526 6.2479 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457988558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:42 Heat of formation + Delta-G solvation = 74.563831 kcal Electronic energy + Delta-G solvation = -25021.879171 eV Core-core repulsion = 21389.682579 eV Total energy + Delta-G solvation = -3632.196593 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.47268 -41.40648 -39.76525 -38.13033 -35.82205 -35.04065 -33.04149 -32.60410 -31.78090 -30.99413 -27.59372 -27.55778 -27.04245 -25.47374 -24.95099 -23.40419 -22.39725 -21.51585 -20.68016 -19.98884 -18.12194 -17.74985 -17.56655 -17.37868 -16.99684 -16.54135 -16.38311 -16.12024 -15.68964 -15.31093 -14.89514 -14.78035 -14.76768 -14.72380 -14.01251 -13.99081 -13.20912 -13.13154 -13.09535 -12.96574 -12.70397 -12.61305 -12.47870 -12.26057 -12.14088 -12.12603 -12.04391 -11.49532 -11.36692 -11.04621 -10.71081 -10.50445 -10.41287 -10.31363 -10.00687 -9.77843 -8.03306 -6.18229 -0.58150 -0.23672 0.88026 1.19578 1.41723 1.45181 1.52820 1.52942 1.75543 2.13974 2.47062 2.65791 3.20547 3.33829 3.49388 3.64293 3.77794 3.92969 3.99892 4.19005 4.22919 4.26396 4.42315 4.47965 4.59163 4.69158 4.74895 4.95896 5.01855 5.05010 5.07255 5.11723 5.15468 5.19163 5.24305 5.30080 5.42863 5.53390 5.67561 5.67747 5.77766 6.16275 6.20648 6.43214 6.53959 6.84970 7.15732 7.37052 7.49246 8.95567 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.034659 B = 0.002466 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.668181 B =11349.505688 C =11965.070523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.052 3.948 3 C -0.122 4.122 4 C -0.530 4.530 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.896 5.896 8 Si 0.943 3.057 9 H -0.279 1.279 10 H -0.281 1.281 11 H -0.279 1.279 12 C 0.145 3.855 13 N -0.697 5.697 14 C 0.543 3.457 15 O -0.590 6.590 16 C -0.125 4.125 17 C -0.071 4.071 18 C -0.084 4.084 19 C -0.072 4.072 20 C 0.095 3.905 21 N -0.246 5.246 22 C -0.029 4.029 23 C -0.054 4.054 24 N -0.304 5.304 25 N -0.136 5.136 26 C -0.069 4.069 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.261 0.739 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.411 0.589 37 H 0.157 0.843 38 H 0.195 0.805 39 H 0.188 0.812 40 H 0.251 0.749 41 H 0.232 0.768 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.206 10.808 22.823 26.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.051 3.949 3 C -0.180 4.180 4 C -0.568 4.568 5 H 0.060 0.940 6 C -0.170 4.170 7 N -0.535 5.535 8 Si 0.770 3.230 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.204 1.204 12 C 0.022 3.978 13 N -0.348 5.348 14 C 0.331 3.669 15 O -0.472 6.472 16 C -0.129 4.129 17 C -0.090 4.090 18 C -0.102 4.102 19 C -0.092 4.092 20 C 0.004 3.996 21 N -0.034 5.034 22 C -0.177 4.177 23 C -0.210 4.210 24 N -0.169 5.169 25 N -0.114 5.114 26 C -0.090 4.090 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.251 0.749 37 H 0.175 0.825 38 H 0.212 0.788 39 H 0.206 0.794 40 H 0.267 0.733 41 H 0.248 0.752 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.834 9.106 22.164 24.917 hybrid contribution 0.007 -0.168 -0.954 0.968 sum -6.826 8.938 21.211 24.008 Atomic orbital electron populations 1.21693 0.96806 0.98786 1.00728 1.18365 0.93483 0.93146 0.89888 1.21693 0.97968 0.97636 1.00727 1.21254 1.31767 1.12157 0.91641 0.93999 1.25400 0.95175 0.95602 1.00784 1.69883 1.36891 1.23067 1.23637 0.85802 0.78572 0.78559 0.80111 1.20547 1.20686 1.20380 1.21368 0.97180 0.95241 0.84032 1.45978 1.52265 1.31779 1.04815 1.18742 0.80023 0.83776 0.84328 1.90754 1.40437 1.28502 1.87477 1.19675 1.02915 0.98907 0.91397 1.21904 0.93025 0.91860 1.02227 1.21539 0.98728 1.00705 0.89211 1.21633 0.94179 0.91816 1.01583 1.17736 1.03488 0.98393 0.79961 1.44959 1.29300 1.21994 1.07133 1.24777 1.05548 1.05197 0.82200 1.24459 0.98382 0.94755 1.03449 1.75092 1.20653 1.23117 0.98041 1.78492 1.13085 1.07812 1.11974 1.20830 0.98111 0.99333 0.90703 0.93974 0.91625 0.96412 0.96414 0.91623 0.93972 0.92950 0.94201 0.94240 0.74938 0.82529 0.78833 0.79448 0.73334 0.75176 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.17 8.08 71.98 0.58 -4.59 16 2 C 0.05 2.33 0.50 -52.93 -0.03 2.30 16 3 C -0.12 -5.18 8.08 71.98 0.58 -4.60 16 4 C -0.53 -27.69 8.01 25.60 0.21 -27.49 16 5 H 0.04 2.26 7.74 -2.91 -0.02 2.24 16 6 C 0.03 1.58 5.15 84.65 0.44 2.01 16 7 N -0.90 -46.49 9.35 21.45 0.20 -46.29 16 8 Si 0.94 42.28 29.54 68.60 2.03 44.31 16 9 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 C 0.15 6.15 4.50 86.38 0.39 6.53 16 13 N -0.70 -23.44 4.91 -465.95 -2.29 -25.73 16 14 C 0.54 19.16 7.77 86.79 0.67 19.83 16 15 O -0.59 -26.52 16.34 -3.88 -0.06 -26.58 16 16 C -0.13 -3.23 5.87 -20.10 -0.12 -3.35 16 17 C -0.07 -1.10 9.54 22.54 0.21 -0.88 16 18 C -0.08 -0.65 10.02 22.21 0.22 -0.42 16 19 C -0.07 -0.63 9.45 22.44 0.21 -0.42 16 20 C 0.09 1.85 6.67 38.03 0.25 2.10 16 21 N -0.25 -5.22 3.56 -187.13 -0.67 -5.88 16 22 C -0.03 -0.34 10.91 83.37 0.91 0.57 16 23 C -0.05 -0.82 12.05 83.73 1.01 0.19 16 24 N -0.30 -8.18 12.39 -58.25 -0.72 -8.90 16 25 N -0.14 -4.05 12.42 37.02 0.46 -3.59 16 26 C -0.07 -1.87 9.16 22.65 0.21 -1.66 16 27 H 0.04 1.42 6.86 -2.39 -0.02 1.41 16 28 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 29 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 32 H 0.04 1.42 6.86 -2.39 -0.02 1.41 16 33 H 0.26 13.04 8.31 -92.71 -0.77 12.27 16 34 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.41 11.15 4.19 -92.71 -0.39 10.76 16 37 H 0.16 1.86 6.40 -2.91 -0.02 1.84 16 38 H 0.19 -0.21 8.06 -2.91 -0.02 -0.23 16 39 H 0.19 -0.20 6.77 -2.91 -0.02 -0.22 16 40 H 0.25 -0.34 7.12 -2.91 -0.02 -0.36 16 41 H 0.23 1.35 8.06 -2.91 -0.02 1.32 16 42 H 0.12 4.02 7.29 -2.91 -0.02 4.00 16 Total: -1.00 -77.52 347.98 5.37 -72.15 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.67 Total: 10.40 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 5.75 Total: -9.87 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -3.01 Total: -90.40 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.06 Total: -26.58 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -77.52 5.37 -72.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457988558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.713 kcal (2) G-P(sol) polarization free energy of solvation -77.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds