Wall clock time and date at job start Tue Mar 31 2020 11:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47065 * 2 1 4 4 C 1.50697 * 109.47271 * 240.00044 * 2 1 3 5 5 H 1.08001 * 120.00074 * 239.99860 * 4 2 1 6 6 C 1.37877 * 120.00129 * 59.99945 * 4 2 1 7 7 N 1.31519 * 120.00115 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00129 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47403 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47181 * 120.00215 * 8 6 4 11 11 H 1.48502 * 109.47399 * 239.99839 * 8 6 4 12 12 C 1.52999 * 109.47159 * 120.00100 * 2 1 3 13 13 N 1.46504 * 109.47117 * 300.00118 * 12 2 1 14 14 C 1.34772 * 120.00486 * 179.97438 * 13 12 2 15 15 O 1.21611 * 119.99298 * 0.02562 * 14 13 12 16 16 C 1.47414 * 120.00472 * 179.97438 * 14 13 12 17 17 C 1.41331 * 126.40794 * 359.68882 * 16 14 13 18 18 N 1.30467 * 108.06818 * 180.26367 * 17 16 14 19 19 N 1.39938 * 108.91518 * 0.02562 * 18 17 16 20 20 C 1.40175 * 125.77383 * 179.97438 * 19 18 17 21 21 C 1.39264 * 120.48337 * 0.02562 * 20 19 18 22 22 C 1.38509 * 118.36239 * 180.02562 * 21 20 19 23 23 C 1.38274 * 119.22954 * 359.97438 * 22 21 20 24 24 N 1.31858 * 120.91379 * 0.02562 * 23 22 21 25 25 C 1.31818 * 121.79320 * 359.70201 * 24 23 22 26 26 C 1.34534 * 108.45812 * 359.97438 * 19 18 17 27 27 H 1.09000 * 109.47296 * 299.99870 * 1 2 3 28 28 H 1.09005 * 109.46765 * 60.00576 * 1 2 3 29 29 H 1.08996 * 109.46718 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47466 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47637 * 299.99691 * 3 2 1 32 32 H 1.09008 * 109.47564 * 59.99920 * 3 2 1 33 33 H 0.97000 * 120.00195 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.47149 * 180.02562 * 12 2 1 35 35 H 1.08999 * 109.47068 * 59.99636 * 12 2 1 36 36 H 0.97005 * 119.99489 * 359.97438 * 13 12 2 37 37 H 1.07998 * 125.96201 * 0.26161 * 17 16 14 38 38 H 1.07998 * 120.81849 * 359.97438 * 21 20 19 39 39 H 1.07998 * 120.38448 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.53809 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.66534 * 180.31463 * 25 24 23 42 42 H 1.08000 * 126.31229 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6994 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 3.1456 -2.2877 -3.6038 10 1 1.1662 -1.5866 -4.8161 11 1 3.1467 -0.1874 -4.8165 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8768 -0.4914 3.6695 15 8 2.5760 -1.4801 3.7810 16 6 1.3859 0.2039 4.8732 17 6 0.5760 1.3617 4.9014 18 7 0.3597 1.6739 6.1496 19 7 1.0113 0.7453 6.9689 20 6 1.0126 0.7481 8.3707 21 6 0.3247 1.7325 9.0758 22 6 0.3558 1.6936 10.4600 23 6 1.0624 0.6867 11.0914 24 7 1.7035 -0.2308 10.3944 25 6 1.6951 -0.2333 9.0763 26 6 1.6365 -0.1506 6.1838 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 0.7090 1.1614 -3.4845 34 1 3.1300 -0.7209 1.2494 35 1 1.6767 -1.7489 1.2492 36 1 0.9943 0.7582 2.3564 37 1 0.2016 1.8950 4.0401 38 1 -0.2189 2.5077 8.5561 39 1 -0.1665 2.4406 11.0393 40 1 1.0903 0.6519 12.1705 41 1 2.2280 -1.0045 8.5398 42 1 2.2256 -0.9921 6.5173 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457995012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:35 Heat of formation + Delta-G solvation = 78.433332 kcal Electronic energy + Delta-G solvation = -24791.803839 eV Core-core repulsion = 21159.775041 eV Total energy + Delta-G solvation = -3632.028798 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.02492 -40.37036 -38.88054 -36.31561 -34.51381 -33.26058 -32.78403 -31.03536 -30.53152 -29.71489 -25.93736 -25.72704 -25.22202 -24.41049 -24.13658 -22.22412 -21.31568 -19.92281 -18.90011 -18.67891 -17.45588 -16.80748 -16.22367 -15.90326 -15.82232 -15.35297 -14.94882 -14.64522 -14.59237 -14.43910 -14.03559 -13.68544 -13.35264 -13.11925 -12.87306 -12.74537 -12.61911 -12.18341 -11.44396 -11.40392 -11.18929 -11.12837 -10.87853 -10.66209 -10.39167 -10.24572 -10.20791 -10.13535 -9.63813 -9.63761 -9.48491 -9.28701 -8.78323 -8.67343 -8.42784 -8.27093 -6.02369 -4.12125 0.14972 0.63881 1.61046 1.82550 2.02648 3.26933 3.27299 3.36058 3.40459 3.66397 3.68275 3.87724 4.06336 4.13903 4.39720 4.41512 4.46202 4.60319 4.88020 4.91455 5.09082 5.13279 5.24603 5.51151 5.54125 5.58676 5.89805 6.10996 6.25977 6.33389 6.51226 6.58179 6.77975 6.81958 6.93543 7.02129 7.02202 7.16363 7.35067 7.35709 7.55598 7.69725 8.01087 8.05292 8.15843 8.38427 8.69361 8.88932 9.53732 10.99071 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.042420 B = 0.002284 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.915085 B =12256.562030 C =12725.405988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.133 3.867 13 N -0.709 5.709 14 C 0.582 3.418 15 O -0.557 6.557 16 C -0.264 4.264 17 C 0.097 3.903 18 N -0.293 5.293 19 N -0.316 5.316 20 C 0.110 3.890 21 C -0.074 4.074 22 C -0.147 4.147 23 C 0.086 3.914 24 N -0.456 5.456 25 C 0.087 3.913 26 C 0.119 3.881 27 H 0.006 0.994 28 H 0.085 0.915 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.086 0.914 32 H 0.006 0.994 33 H 0.259 0.741 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.397 0.603 37 H 0.200 0.800 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.849 4.047 23.306 23.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 C -0.189 4.189 4 C -0.542 4.542 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.011 3.989 13 N -0.359 5.359 14 C 0.368 3.632 15 O -0.437 6.437 16 C -0.278 4.278 17 C -0.092 4.092 18 N -0.111 5.111 19 N -0.090 5.090 20 C 0.016 3.984 21 C -0.101 4.101 22 C -0.167 4.167 23 C -0.072 4.072 24 N -0.164 5.164 25 C -0.073 4.073 26 C -0.026 4.026 27 H 0.025 0.975 28 H 0.104 0.896 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.025 0.975 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.232 0.768 37 H 0.216 0.784 38 H 0.169 0.831 39 H 0.164 0.836 40 H 0.181 0.819 41 H 0.182 0.818 42 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -2.533 3.613 24.496 24.890 hybrid contribution -0.086 0.120 -1.998 2.003 sum -2.620 3.733 22.499 22.956 Atomic orbital electron populations 1.21835 0.97725 0.99244 1.00083 1.18374 0.92832 0.92797 0.90588 1.21835 0.98642 0.98319 1.00083 1.21017 1.31342 1.12058 0.89831 0.92348 1.24885 0.94898 0.94943 0.98875 1.69812 1.36761 1.22771 1.23107 0.86519 0.78625 0.79756 0.83000 1.19754 1.21100 1.21096 1.21746 0.98241 0.95824 0.83107 1.46094 1.52461 1.31658 1.05657 1.17156 0.80159 0.83503 0.82390 1.90755 1.39279 1.26665 1.86961 1.20593 1.11082 1.02244 0.93892 1.24349 0.95052 0.94660 0.95165 1.77226 1.19178 1.12860 1.01786 1.45510 1.38400 1.21382 1.03682 1.18712 1.01330 0.98921 0.79483 1.21430 0.97065 0.97471 0.94161 1.22151 1.00281 1.00226 0.94053 1.22911 0.93068 0.90266 1.00906 1.67785 1.17611 1.24556 1.06475 1.22655 0.97540 0.96834 0.90286 1.23029 0.95348 0.94393 0.89867 0.97482 0.89590 0.95391 0.95397 0.89582 0.97496 0.93076 0.92544 0.92538 0.76800 0.78374 0.83087 0.83596 0.81867 0.81822 0.78967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 2 C 0.05 1.24 0.50 -155.66 -0.08 1.16 16 3 C -0.13 -2.88 8.08 37.15 0.30 -2.58 16 4 C -0.50 -12.99 8.01 -34.44 -0.28 -13.26 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.89 -23.30 9.35 55.43 0.52 -22.78 16 8 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 12 C 0.13 2.76 4.50 -4.04 -0.02 2.74 16 13 N -0.71 -12.28 4.95 -61.39 -0.30 -12.58 16 14 C 0.58 10.01 7.81 -12.53 -0.10 9.91 16 15 O -0.56 -11.37 16.90 5.27 0.09 -11.28 16 16 C -0.26 -3.64 6.13 -105.05 -0.64 -4.29 16 17 C 0.10 1.16 11.50 -16.96 -0.20 0.97 16 18 N -0.29 -3.63 11.85 30.87 0.37 -3.26 16 19 N -0.32 -3.65 3.77 -10.11 -0.04 -3.69 16 20 C 0.11 1.09 6.70 -83.45 -0.56 0.53 16 21 C -0.07 -0.61 9.77 -39.10 -0.38 -0.99 16 22 C -0.15 -0.87 10.11 -39.47 -0.40 -1.27 16 23 C 0.09 0.57 11.18 -17.53 -0.20 0.37 16 24 N -0.46 -4.15 10.35 -13.10 -0.14 -4.28 16 25 C 0.09 0.78 10.62 -17.35 -0.18 0.60 16 26 C 0.12 1.43 10.62 -16.43 -0.17 1.25 16 27 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 28 H 0.09 2.10 6.07 -51.93 -0.32 1.78 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 32 H 0.01 0.12 6.86 -51.92 -0.36 -0.24 16 33 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.40 6.08 5.12 -40.82 -0.21 5.87 16 37 H 0.20 1.85 7.50 -52.49 -0.39 1.46 16 38 H 0.15 1.19 7.77 -52.49 -0.41 0.79 16 39 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 40 H 0.16 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.16 1.18 6.74 -52.49 -0.35 0.83 16 42 H 0.19 1.83 7.04 -52.49 -0.37 1.46 16 LS Contribution 351.56 15.07 5.30 5.30 Total: -1.00 -31.00 351.56 -7.08 -38.08 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.15 Total: 4.80 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -2.70 Total: -5.83 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.41 Total: -46.59 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.00 -7.08 -38.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457995012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.509 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds