Wall clock time and date at job start Tue Mar 31 2020 11:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47065 * 2 1 4 4 C 1.50697 * 109.47271 * 240.00044 * 2 1 3 5 5 H 1.08001 * 120.00074 * 239.99860 * 4 2 1 6 6 C 1.37877 * 120.00129 * 59.99945 * 4 2 1 7 7 N 1.31519 * 120.00115 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00129 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47403 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47181 * 120.00215 * 8 6 4 11 11 H 1.48502 * 109.47399 * 239.99839 * 8 6 4 12 12 C 1.52999 * 109.47159 * 120.00100 * 2 1 3 13 13 N 1.46504 * 109.47117 * 300.00118 * 12 2 1 14 14 C 1.34772 * 120.00486 * 179.97438 * 13 12 2 15 15 O 1.21611 * 119.99298 * 0.02562 * 14 13 12 16 16 C 1.47414 * 120.00472 * 179.97438 * 14 13 12 17 17 C 1.41331 * 126.40794 * 359.68882 * 16 14 13 18 18 N 1.30467 * 108.06818 * 180.26367 * 17 16 14 19 19 N 1.39938 * 108.91518 * 0.02562 * 18 17 16 20 20 C 1.40175 * 125.77383 * 179.97438 * 19 18 17 21 21 C 1.39264 * 120.48337 * 0.02562 * 20 19 18 22 22 C 1.38509 * 118.36239 * 180.02562 * 21 20 19 23 23 C 1.38274 * 119.22954 * 359.97438 * 22 21 20 24 24 N 1.31858 * 120.91379 * 0.02562 * 23 22 21 25 25 C 1.31818 * 121.79320 * 359.70201 * 24 23 22 26 26 C 1.34534 * 108.45812 * 359.97438 * 19 18 17 27 27 H 1.09000 * 109.47296 * 299.99870 * 1 2 3 28 28 H 1.09005 * 109.46765 * 60.00576 * 1 2 3 29 29 H 1.08996 * 109.46718 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47466 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47637 * 299.99691 * 3 2 1 32 32 H 1.09008 * 109.47564 * 59.99920 * 3 2 1 33 33 H 0.97000 * 120.00195 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.47149 * 180.02562 * 12 2 1 35 35 H 1.08999 * 109.47068 * 59.99636 * 12 2 1 36 36 H 0.97005 * 119.99489 * 359.97438 * 13 12 2 37 37 H 1.07998 * 125.96201 * 0.26161 * 17 16 14 38 38 H 1.07998 * 120.81849 * 359.97438 * 21 20 19 39 39 H 1.07998 * 120.38448 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.53809 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.66534 * 180.31463 * 25 24 23 42 42 H 1.08000 * 126.31229 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6994 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 3.1456 -2.2877 -3.6038 10 1 1.1662 -1.5866 -4.8161 11 1 3.1467 -0.1874 -4.8165 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8768 -0.4914 3.6695 15 8 2.5760 -1.4801 3.7810 16 6 1.3859 0.2039 4.8732 17 6 0.5760 1.3617 4.9014 18 7 0.3597 1.6739 6.1496 19 7 1.0113 0.7453 6.9689 20 6 1.0126 0.7481 8.3707 21 6 0.3247 1.7325 9.0758 22 6 0.3558 1.6936 10.4600 23 6 1.0624 0.6867 11.0914 24 7 1.7035 -0.2308 10.3944 25 6 1.6951 -0.2333 9.0763 26 6 1.6365 -0.1506 6.1838 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 0.7090 1.1614 -3.4845 34 1 3.1300 -0.7209 1.2494 35 1 1.6767 -1.7489 1.2492 36 1 0.9943 0.7582 2.3564 37 1 0.2016 1.8950 4.0401 38 1 -0.2189 2.5077 8.5561 39 1 -0.1665 2.4406 11.0393 40 1 1.0903 0.6519 12.1705 41 1 2.2280 -1.0045 8.5398 42 1 2.2256 -0.9921 6.5173 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457995012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:34 Heat of formation + Delta-G solvation = 59.493036 kcal Electronic energy + Delta-G solvation = -24792.625152 eV Core-core repulsion = 21159.775041 eV Total energy + Delta-G solvation = -3632.850111 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.90199 -41.07328 -40.25861 -38.02757 -35.35825 -34.86483 -33.39627 -32.74736 -31.51014 -30.56815 -27.51868 -27.51533 -26.97209 -25.14700 -25.04337 -23.31840 -22.12576 -21.10541 -20.54541 -19.76697 -18.24290 -17.80274 -17.52539 -17.01087 -16.82200 -16.66637 -16.46359 -15.98750 -15.88639 -15.08182 -14.86244 -14.84211 -14.72567 -14.35534 -14.27696 -13.94549 -13.91248 -13.19897 -13.16830 -13.06967 -12.66793 -12.55710 -12.39793 -12.21703 -12.10533 -11.93651 -11.44323 -11.24510 -10.94216 -10.83768 -10.70499 -10.64532 -10.40123 -10.36192 -9.91582 -9.38939 -7.99716 -6.14690 -0.54861 0.06486 0.69988 1.00099 1.08301 1.42693 1.47246 1.56319 2.35331 2.41552 2.52784 2.68766 3.19399 3.23994 3.31367 3.53989 3.67795 3.83263 3.92647 3.98333 4.22563 4.29969 4.44214 4.56874 4.56907 4.61796 4.76614 4.88652 5.00580 5.05333 5.10660 5.14671 5.24056 5.24700 5.38571 5.41100 5.63018 5.71028 5.71753 5.79485 6.19860 6.25491 6.26620 6.47133 6.72060 6.77497 6.89808 7.33948 7.52744 8.99224 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.042420 B = 0.002284 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.915085 B =12256.562030 C =12725.405988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.122 4.122 4 C -0.525 4.525 5 H 0.045 0.955 6 C 0.027 3.973 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.149 3.851 13 N -0.703 5.703 14 C 0.587 3.413 15 O -0.595 6.595 16 C -0.289 4.289 17 C 0.101 3.899 18 N -0.305 5.305 19 N -0.311 5.311 20 C 0.081 3.919 21 C -0.080 4.080 22 C -0.135 4.135 23 C 0.089 3.911 24 N -0.481 5.481 25 C 0.082 3.918 26 C 0.129 3.871 27 H 0.039 0.961 28 H 0.062 0.938 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.259 0.741 34 H 0.040 0.960 35 H 0.041 0.959 36 H 0.408 0.592 37 H 0.223 0.777 38 H 0.152 0.848 39 H 0.182 0.818 40 H 0.196 0.804 41 H 0.173 0.827 42 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.553 5.051 25.635 26.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.049 3.951 3 C -0.180 4.180 4 C -0.563 4.563 5 H 0.063 0.937 6 C -0.173 4.173 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.026 3.974 13 N -0.353 5.353 14 C 0.375 3.625 15 O -0.477 6.477 16 C -0.304 4.304 17 C -0.087 4.087 18 N -0.123 5.123 19 N -0.083 5.083 20 C -0.013 4.013 21 C -0.107 4.107 22 C -0.155 4.155 23 C -0.068 4.068 24 N -0.189 5.189 25 C -0.077 4.077 26 C -0.018 4.018 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.246 0.754 37 H 0.239 0.761 38 H 0.170 0.830 39 H 0.199 0.801 40 H 0.213 0.787 41 H 0.190 0.810 42 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -3.261 4.652 26.855 27.449 hybrid contribution 0.119 -0.173 -2.508 2.517 sum -3.141 4.478 24.347 24.954 Atomic orbital electron populations 1.21682 0.97040 0.98735 1.00499 1.18373 0.93325 0.93087 0.90268 1.21681 0.97959 0.97811 1.00501 1.21300 1.31453 1.12051 0.91523 0.93706 1.25446 0.95261 0.95646 1.00935 1.69913 1.37102 1.23287 1.23452 0.85726 0.78075 0.78738 0.80361 1.20014 1.20856 1.20847 1.21294 0.97151 0.95129 0.83857 1.45858 1.52723 1.31877 1.04877 1.17512 0.79161 0.82900 0.82955 1.90730 1.41048 1.28465 1.87491 1.20258 1.13430 1.03652 0.93019 1.24679 0.94266 0.93965 0.95808 1.77199 1.19749 1.13442 1.01893 1.45618 1.37573 1.20755 1.04389 1.18965 1.03256 1.00417 0.78664 1.21648 0.96743 0.97054 0.95271 1.22519 0.99388 1.00419 0.93176 1.23544 0.91567 0.89317 1.02389 1.67841 1.18766 1.25842 1.06476 1.22815 0.97441 0.96892 0.90554 1.23318 0.94509 0.94476 0.89528 0.94189 0.91927 0.96315 0.96321 0.91917 0.94199 0.93105 0.94112 0.94104 0.75442 0.76099 0.83005 0.80100 0.78732 0.81022 0.77239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.08 71.98 0.58 -4.70 16 2 C 0.05 2.27 0.50 -52.93 -0.03 2.25 16 3 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 4 C -0.52 -27.46 8.01 25.60 0.21 -27.26 16 5 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 6 C 0.03 1.40 5.15 84.65 0.44 1.83 16 7 N -0.90 -47.49 9.35 21.45 0.20 -47.29 16 8 Si 0.94 42.50 29.54 68.60 2.03 44.53 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 C 0.15 6.25 4.50 86.38 0.39 6.64 16 13 N -0.70 -23.84 4.95 -466.39 -2.31 -26.15 16 14 C 0.59 19.97 7.81 86.66 0.68 20.65 16 15 O -0.59 -24.56 16.90 -4.07 -0.07 -24.63 16 16 C -0.29 -7.71 6.13 -20.14 -0.12 -7.83 16 17 C 0.10 2.27 11.50 85.66 0.99 3.26 16 18 N -0.31 -7.09 11.85 -56.24 -0.67 -7.76 16 19 N -0.31 -6.79 3.77 -185.90 -0.70 -7.49 16 20 C 0.08 1.48 6.70 38.19 0.26 1.74 16 21 C -0.08 -1.15 9.77 22.58 0.22 -0.93 16 22 C -0.14 -1.17 10.11 22.34 0.23 -0.95 16 23 C 0.09 0.91 11.18 84.70 0.95 1.86 16 24 N -0.48 -7.84 10.35 -195.35 -2.02 -9.86 16 25 C 0.08 1.38 10.62 84.83 0.90 2.28 16 26 C 0.13 2.97 10.62 84.24 0.89 3.86 16 27 H 0.04 1.42 6.86 -2.39 -0.02 1.41 16 28 H 0.06 3.04 6.07 -2.38 -0.01 3.02 16 29 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 32 H 0.04 1.42 6.86 -2.38 -0.02 1.40 16 33 H 0.26 13.20 8.31 -92.71 -0.77 12.43 16 34 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.41 11.75 5.12 -92.70 -0.47 11.28 16 37 H 0.22 3.59 7.50 -2.91 -0.02 3.57 16 38 H 0.15 2.12 7.77 -2.91 -0.02 2.10 16 39 H 0.18 0.25 8.06 -2.91 -0.02 0.23 16 40 H 0.20 0.63 8.06 -2.91 -0.02 0.61 16 41 H 0.17 2.35 6.74 -2.91 -0.02 2.33 16 42 H 0.21 3.84 7.04 -2.91 -0.02 3.82 16 Total: -1.00 -67.48 351.56 4.19 -63.29 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.58 Total: 17.38 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 7.15 Total: -2.01 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -5.50 Total: -98.55 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.07 Total: -24.63 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -67.48 4.19 -63.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457995012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.779 kcal (2) G-P(sol) polarization free energy of solvation -67.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds