Wall clock time and date at job start Tue Mar 31 2020 11:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47137 * 2 1 4 4 C 1.50699 * 109.46766 * 239.99991 * 2 1 3 5 5 H 1.08005 * 120.00422 * 237.00589 * 4 2 1 6 6 C 1.37880 * 120.00007 * 57.00727 * 4 2 1 7 7 N 1.31509 * 119.99903 * 5.54149 * 6 4 2 8 8 Si 1.86803 * 120.00066 * 185.53736 * 6 4 2 9 9 H 1.48501 * 109.46728 * 85.00209 * 8 6 4 10 10 H 1.48498 * 109.47089 * 205.00291 * 8 6 4 11 11 H 1.48501 * 109.47132 * 325.00661 * 8 6 4 12 12 C 1.53002 * 109.47149 * 120.00575 * 2 1 3 13 13 N 1.46506 * 109.46806 * 299.99708 * 12 2 1 14 14 C 1.34771 * 119.99909 * 180.02562 * 13 12 2 15 15 O 1.21581 * 120.00194 * 359.97438 * 14 13 12 16 16 C 1.47695 * 120.00068 * 179.97438 * 14 13 12 17 17 C 1.39693 * 120.07707 * 179.97438 * 16 14 13 18 18 C 1.37738 * 119.91555 * 179.97438 * 17 16 14 19 19 C 1.39026 * 120.08179 * 0.02562 * 18 17 16 20 20 N 1.39938 * 119.92095 * 179.97438 * 19 18 17 21 21 C 1.36317 * 126.86582 * 180.02562 * 20 19 18 22 22 C 1.34966 * 106.77826 * 179.97438 * 21 20 19 23 23 N 1.33369 * 109.01343 * 359.97438 * 22 21 20 24 24 N 1.28760 * 109.93195 * 0.02562 * 23 22 21 25 25 C 1.39029 * 120.15775 * 0.25511 * 19 18 17 26 26 C 1.37742 * 120.07925 * 359.48751 * 25 19 18 27 27 H 1.09005 * 109.46628 * 293.93008 * 1 2 3 28 28 H 1.08997 * 109.47129 * 53.92953 * 1 2 3 29 29 H 1.08999 * 109.47181 * 173.93736 * 1 2 3 30 30 H 1.09008 * 109.47031 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47419 * 300.00163 * 3 2 1 32 32 H 1.09004 * 109.46895 * 60.00550 * 3 2 1 33 33 H 0.97000 * 120.00315 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.47092 * 180.02562 * 12 2 1 35 35 H 1.08998 * 109.47133 * 59.99135 * 12 2 1 36 36 H 0.96999 * 120.00091 * 0.02562 * 13 12 2 37 37 H 1.07996 * 120.04628 * 359.96193 * 17 16 14 38 38 H 1.08004 * 119.96220 * 180.02562 * 18 17 16 39 39 H 1.07996 * 126.60754 * 359.71192 * 21 20 19 40 40 H 1.07994 * 125.49041 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.95572 * 179.72167 * 25 19 18 42 42 H 1.07996 * 120.03883 * 180.25763 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6925 -1.5595 -1.1322 6 6 1.6490 -0.2764 -2.4818 7 7 0.9350 0.8208 -2.6071 8 14 2.1440 -1.2470 -3.9992 9 1 1.1617 -2.3360 -4.2323 10 1 2.1707 -0.3437 -5.1776 11 1 3.4930 -1.8328 -3.7938 12 6 2.0401 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8777 -0.4910 3.6695 15 8 2.5767 -1.4795 3.7810 16 6 1.3859 0.2055 4.8754 17 6 1.7224 -0.2704 6.1449 18 6 1.2624 0.3820 7.2674 19 6 0.4637 1.5126 7.1380 20 7 -0.0023 2.1725 8.2806 21 6 -0.7889 3.2852 8.3187 22 6 -0.9929 3.5736 9.6213 23 7 -0.3565 2.6725 10.3707 24 7 0.2459 1.8207 9.6161 25 6 0.1220 1.9857 5.8761 26 6 0.5828 1.3414 4.7492 27 1 -0.3633 0.4169 0.9394 28 1 -0.3633 0.6051 -0.8306 29 1 -0.3633 -1.0219 -0.1085 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9562 0.8901 33 1 0.6657 1.1264 -3.4874 34 1 3.1300 -0.7210 1.2494 35 1 1.6766 -1.7490 1.2492 36 1 0.9938 0.7577 2.3565 37 1 2.3423 -1.1490 6.2463 38 1 1.5224 0.0149 8.2492 39 1 -1.1713 3.8330 7.4702 40 1 -1.5772 4.4008 9.9963 41 1 -0.5023 2.8616 5.7793 42 1 0.3204 1.7119 3.7693 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457995484.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:46 Heat of formation + Delta-G solvation = 90.425744 kcal Electronic energy + Delta-G solvation = -24854.831229 eV Core-core repulsion = 21223.322461 eV Total energy + Delta-G solvation = -3631.508768 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.57905 -40.25787 -38.63926 -36.46670 -34.76648 -33.50686 -31.88239 -31.03458 -30.97540 -29.94027 -26.07437 -25.82471 -25.35926 -24.43601 -23.73449 -22.24404 -21.51420 -20.39492 -19.14501 -18.82135 -17.81120 -16.23921 -16.05549 -15.82702 -15.69138 -15.15175 -14.93825 -14.90223 -14.59859 -14.41856 -13.99876 -13.64177 -13.46937 -12.97993 -12.88412 -12.81747 -12.31048 -12.24685 -11.61722 -11.55631 -11.43264 -11.36229 -11.26133 -10.92271 -10.75469 -10.47297 -10.28270 -9.83777 -9.82326 -9.72039 -9.52157 -9.38428 -8.88417 -8.86974 -8.53794 -8.39432 -6.09284 -4.18097 -0.05536 0.88281 1.27896 1.69845 2.13881 2.81940 3.24947 3.31690 3.34345 3.49242 3.66245 3.95343 4.03721 4.34793 4.35286 4.48495 4.59875 4.73879 4.79861 4.90504 5.08118 5.18088 5.18381 5.50890 5.60138 5.70351 5.86154 5.99573 6.09944 6.14790 6.22764 6.40496 6.47499 6.66222 6.70443 6.82525 6.87436 6.92426 7.25748 7.46728 7.63001 7.70993 7.87109 7.90983 8.05178 8.29704 8.48950 8.82050 9.47736 10.92878 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.032902 B = 0.002383 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.815056 B =11746.779443 C =12403.596672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.130 3.870 13 N -0.708 5.708 14 C 0.545 3.455 15 O -0.543 6.543 16 C -0.119 4.119 17 C -0.040 4.040 18 C -0.115 4.115 19 C 0.151 3.849 20 N -0.317 5.317 21 C 0.024 3.976 22 C -0.073 4.073 23 N -0.233 5.233 24 N -0.062 5.062 25 C -0.132 4.132 26 C -0.063 4.063 27 H 0.005 0.995 28 H 0.082 0.918 29 H 0.030 0.970 30 H 0.028 0.972 31 H 0.087 0.913 32 H 0.004 0.996 33 H 0.260 0.740 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.397 0.603 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.198 0.802 40 H 0.191 0.809 41 H 0.139 0.861 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.217 7.333 17.349 19.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.358 5.358 14 C 0.330 3.670 15 O -0.422 6.422 16 C -0.123 4.123 17 C -0.060 4.060 18 C -0.135 4.135 19 C 0.059 3.941 20 N -0.098 5.098 21 C -0.126 4.126 22 C -0.228 4.228 23 N -0.102 5.102 24 N -0.040 5.040 25 C -0.153 4.153 26 C -0.083 4.083 27 H 0.024 0.976 28 H 0.101 0.899 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.105 0.895 32 H 0.023 0.977 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.234 0.766 37 H 0.168 0.832 38 H 0.163 0.837 39 H 0.214 0.786 40 H 0.208 0.792 41 H 0.157 0.843 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.112 5.772 18.226 19.555 hybrid contribution -0.627 0.715 -1.715 1.961 sum -4.740 6.487 16.511 18.362 Atomic orbital electron populations 1.21824 0.97702 1.00317 0.98910 1.18371 0.92788 0.92777 0.90580 1.21866 0.98741 0.98286 0.99989 1.20948 1.29461 1.14405 0.89847 0.92360 1.24874 0.94933 0.94763 0.98843 1.69810 1.37796 1.21372 1.23380 0.86588 0.79075 0.79914 0.82307 1.20596 1.21317 1.19943 1.21802 0.98386 0.95954 0.83053 1.46285 1.52016 1.31588 1.05927 1.18123 0.81075 0.84391 0.83370 1.90771 1.38416 1.26222 1.86828 1.20361 1.00264 0.96940 0.94725 1.21237 0.96178 0.98771 0.89808 1.20907 0.97881 0.94132 1.00557 1.17751 0.98752 0.94577 0.83067 1.48044 1.34600 1.19963 1.07216 1.23631 0.96965 0.90784 1.01229 1.23284 1.06999 1.03265 0.89286 1.74354 1.06637 1.01985 1.27255 1.82150 1.20744 1.19189 0.81885 1.20775 1.02830 1.01904 0.89749 1.21248 0.94691 0.93576 0.98766 0.97604 0.89896 0.95042 0.95320 0.89469 0.97715 0.92953 0.92344 0.92306 0.76625 0.83206 0.83660 0.78556 0.79190 0.84342 0.83967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 8.03 37.16 0.30 -2.45 16 2 C 0.06 1.22 0.50 -155.66 -0.08 1.14 16 3 C -0.13 -2.79 8.11 37.15 0.30 -2.48 16 4 C -0.51 -12.82 8.01 -34.44 -0.28 -13.10 16 5 H 0.06 1.49 7.75 -52.48 -0.41 1.08 16 6 C 0.07 1.72 5.13 -17.82 -0.09 1.63 16 7 N -0.89 -22.81 9.45 55.43 0.52 -22.29 16 8 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 C 0.13 2.61 4.50 -4.04 -0.02 2.59 16 13 N -0.71 -11.63 4.85 -61.29 -0.30 -11.92 16 14 C 0.54 8.86 7.77 -12.40 -0.10 8.76 16 15 O -0.54 -10.71 16.34 5.29 0.09 -10.62 16 16 C -0.12 -1.48 5.88 -104.95 -0.62 -2.09 16 17 C -0.04 -0.46 9.58 -39.22 -0.38 -0.84 16 18 C -0.11 -1.18 9.66 -39.47 -0.38 -1.56 16 19 C 0.15 1.48 6.70 -83.57 -0.56 0.92 16 20 N -0.32 -3.15 3.85 -10.50 -0.04 -3.19 16 21 C 0.02 0.16 10.92 -16.72 -0.18 -0.02 16 22 C -0.07 -0.56 11.86 -18.05 -0.21 -0.77 16 23 N -0.23 -2.66 12.33 30.09 0.37 -2.29 16 24 N -0.06 -0.75 13.15 60.35 0.79 0.04 16 25 C -0.13 -1.08 9.46 -39.47 -0.37 -1.45 16 26 C -0.06 -0.61 9.53 -39.22 -0.37 -0.99 16 27 H 0.01 0.09 6.71 -51.93 -0.35 -0.26 16 28 H 0.08 1.94 6.25 -51.93 -0.32 1.62 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.03 0.61 8.14 -51.92 -0.42 0.18 16 31 H 0.09 2.07 6.10 -51.93 -0.32 1.75 16 32 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 33 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.40 5.68 4.18 -40.82 -0.17 5.51 16 37 H 0.15 1.68 7.64 -52.49 -0.40 1.28 16 38 H 0.15 1.40 7.72 -52.48 -0.41 0.99 16 39 H 0.20 0.51 7.16 -52.49 -0.38 0.13 16 40 H 0.19 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.14 0.69 6.82 -52.49 -0.36 0.33 16 42 H 0.14 1.17 6.39 -52.49 -0.34 0.84 16 LS Contribution 349.01 15.07 5.26 5.26 Total: -1.00 -30.46 349.01 -6.41 -36.87 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.05 Total: 3.68 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -3.04 Total: -10.73 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 1.35 Total: -39.65 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.46 -6.41 -36.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457995484.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.294 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds