Wall clock time and date at job start Tue Mar 31 2020 11:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47137 * 2 1 4 4 C 1.50699 * 109.46766 * 239.99991 * 2 1 3 5 5 H 1.08005 * 120.00422 * 237.00589 * 4 2 1 6 6 C 1.37880 * 120.00007 * 57.00727 * 4 2 1 7 7 N 1.31509 * 119.99903 * 5.54149 * 6 4 2 8 8 Si 1.86803 * 120.00066 * 185.53736 * 6 4 2 9 9 H 1.48501 * 109.46728 * 85.00209 * 8 6 4 10 10 H 1.48498 * 109.47089 * 205.00291 * 8 6 4 11 11 H 1.48501 * 109.47132 * 325.00661 * 8 6 4 12 12 C 1.53002 * 109.47149 * 120.00575 * 2 1 3 13 13 N 1.46506 * 109.46806 * 299.99708 * 12 2 1 14 14 C 1.34771 * 119.99909 * 180.02562 * 13 12 2 15 15 O 1.21581 * 120.00194 * 359.97438 * 14 13 12 16 16 C 1.47695 * 120.00068 * 179.97438 * 14 13 12 17 17 C 1.39693 * 120.07707 * 179.97438 * 16 14 13 18 18 C 1.37738 * 119.91555 * 179.97438 * 17 16 14 19 19 C 1.39026 * 120.08179 * 0.02562 * 18 17 16 20 20 N 1.39938 * 119.92095 * 179.97438 * 19 18 17 21 21 C 1.36317 * 126.86582 * 180.02562 * 20 19 18 22 22 C 1.34966 * 106.77826 * 179.97438 * 21 20 19 23 23 N 1.33369 * 109.01343 * 359.97438 * 22 21 20 24 24 N 1.28760 * 109.93195 * 0.02562 * 23 22 21 25 25 C 1.39029 * 120.15775 * 0.25511 * 19 18 17 26 26 C 1.37742 * 120.07925 * 359.48751 * 25 19 18 27 27 H 1.09005 * 109.46628 * 293.93008 * 1 2 3 28 28 H 1.08997 * 109.47129 * 53.92953 * 1 2 3 29 29 H 1.08999 * 109.47181 * 173.93736 * 1 2 3 30 30 H 1.09008 * 109.47031 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47419 * 300.00163 * 3 2 1 32 32 H 1.09004 * 109.46895 * 60.00550 * 3 2 1 33 33 H 0.97000 * 120.00315 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.47092 * 180.02562 * 12 2 1 35 35 H 1.08998 * 109.47133 * 59.99135 * 12 2 1 36 36 H 0.96999 * 120.00091 * 0.02562 * 13 12 2 37 37 H 1.07996 * 120.04628 * 359.96193 * 17 16 14 38 38 H 1.08004 * 119.96220 * 180.02562 * 18 17 16 39 39 H 1.07996 * 126.60754 * 359.71192 * 21 20 19 40 40 H 1.07994 * 125.49041 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.95572 * 179.72167 * 25 19 18 42 42 H 1.07996 * 120.03883 * 180.25763 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6925 -1.5595 -1.1322 6 6 1.6490 -0.2764 -2.4818 7 7 0.9350 0.8208 -2.6071 8 14 2.1440 -1.2470 -3.9992 9 1 1.1617 -2.3360 -4.2323 10 1 2.1707 -0.3437 -5.1776 11 1 3.4930 -1.8328 -3.7938 12 6 2.0401 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8777 -0.4910 3.6695 15 8 2.5767 -1.4795 3.7810 16 6 1.3859 0.2055 4.8754 17 6 1.7224 -0.2704 6.1449 18 6 1.2624 0.3820 7.2674 19 6 0.4637 1.5126 7.1380 20 7 -0.0023 2.1725 8.2806 21 6 -0.7889 3.2852 8.3187 22 6 -0.9929 3.5736 9.6213 23 7 -0.3565 2.6725 10.3707 24 7 0.2459 1.8207 9.6161 25 6 0.1220 1.9857 5.8761 26 6 0.5828 1.3414 4.7492 27 1 -0.3633 0.4169 0.9394 28 1 -0.3633 0.6051 -0.8306 29 1 -0.3633 -1.0219 -0.1085 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9562 0.8901 33 1 0.6657 1.1264 -3.4874 34 1 3.1300 -0.7210 1.2494 35 1 1.6766 -1.7490 1.2492 36 1 0.9938 0.7577 2.3565 37 1 2.3423 -1.1490 6.2463 38 1 1.5224 0.0149 8.2492 39 1 -1.1713 3.8330 7.4702 40 1 -1.5772 4.4008 9.9963 41 1 -0.5023 2.8616 5.7793 42 1 0.3204 1.7119 3.7693 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457995484.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:45 Heat of formation + Delta-G solvation = 71.905118 kcal Electronic energy + Delta-G solvation = -24855.634344 eV Core-core repulsion = 21223.322461 eV Total energy + Delta-G solvation = -3632.311883 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.23271 -41.33520 -39.71914 -38.09613 -35.58840 -35.05868 -33.00348 -32.34781 -31.66121 -30.85504 -27.54801 -27.53940 -27.02675 -25.54630 -24.45722 -23.15926 -22.19210 -21.53629 -20.63929 -19.70419 -19.01119 -17.76870 -17.05228 -16.92273 -16.63997 -16.31655 -16.31096 -15.99806 -15.62021 -15.28565 -14.90049 -14.72298 -14.67434 -14.59414 -14.02589 -13.97565 -13.81311 -13.23244 -13.07310 -12.95094 -12.69109 -12.60215 -12.29603 -12.25141 -12.16903 -12.14613 -12.12432 -11.46729 -11.32539 -11.00092 -10.69389 -10.46061 -10.38147 -10.26321 -10.04607 -9.56949 -8.02459 -6.15960 -0.83114 0.14427 0.52683 1.05951 1.43218 1.46594 1.53295 1.54606 1.80164 2.19892 2.48814 2.69153 3.22001 3.28162 3.52469 3.66063 3.70853 3.85278 4.04369 4.14604 4.24537 4.36895 4.43681 4.48641 4.52145 4.72491 4.81640 4.88666 5.00838 5.05508 5.06931 5.10526 5.16624 5.21213 5.26215 5.32696 5.39135 5.56829 5.69426 5.70397 5.78792 6.16931 6.22783 6.44467 6.59367 6.87553 7.05331 7.21044 7.51189 8.96927 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.032902 B = 0.002383 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.815056 B =11746.779443 C =12403.596672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.530 4.530 5 H 0.043 0.957 6 C 0.031 3.969 7 N -0.896 5.896 8 Si 0.941 3.059 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.278 1.278 12 C 0.146 3.854 13 N -0.700 5.700 14 C 0.546 3.454 15 O -0.586 6.586 16 C -0.138 4.138 17 C -0.045 4.045 18 C -0.121 4.121 19 C 0.152 3.848 20 N -0.326 5.326 21 C 0.041 3.959 22 C -0.079 4.079 23 N -0.263 5.263 24 N -0.111 5.111 25 C -0.114 4.114 26 C -0.054 4.054 27 H 0.042 0.958 28 H 0.061 0.939 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.260 0.740 34 H 0.041 0.959 35 H 0.042 0.958 36 H 0.410 0.590 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.247 0.753 40 H 0.225 0.775 41 H 0.184 0.816 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.105 9.901 17.884 21.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.050 3.950 3 C -0.180 4.180 4 C -0.568 4.568 5 H 0.062 0.938 6 C -0.169 4.169 7 N -0.535 5.535 8 Si 0.768 3.232 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.203 1.203 12 C 0.022 3.978 13 N -0.352 5.352 14 C 0.335 3.665 15 O -0.469 6.469 16 C -0.142 4.142 17 C -0.065 4.065 18 C -0.141 4.141 19 C 0.060 3.940 20 N -0.108 5.108 21 C -0.108 4.108 22 C -0.235 4.235 23 N -0.132 5.132 24 N -0.088 5.088 25 C -0.135 4.135 26 C -0.073 4.073 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.249 0.751 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.263 0.737 40 H 0.242 0.758 41 H 0.201 0.799 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.009 8.352 18.788 21.421 hybrid contribution -0.094 0.000 -1.791 1.794 sum -6.103 8.352 16.997 19.897 Atomic orbital electron populations 1.21670 0.96853 0.99319 0.99970 1.18367 0.93398 0.93110 0.90089 1.21706 0.97978 0.97694 1.00594 1.21252 1.29501 1.14414 0.91647 0.93848 1.25399 0.95243 0.95550 1.00747 1.69903 1.38123 1.21823 1.23646 0.85841 0.78468 0.78884 0.79996 1.20525 1.20924 1.20290 1.21339 0.97230 0.95273 0.83953 1.46027 1.52283 1.31827 1.05025 1.18668 0.79977 0.83779 0.84124 1.90746 1.40365 1.28289 1.87450 1.20051 1.02713 0.98635 0.92832 1.21140 0.96473 0.98809 0.90067 1.20879 0.98435 0.94814 1.00007 1.17957 0.98044 0.94119 0.83927 1.48163 1.35124 1.20850 1.06615 1.24532 0.94640 0.89132 1.02538 1.24010 1.06548 1.03329 0.89589 1.74329 1.07448 1.02999 1.28410 1.82154 1.22903 1.20675 0.83043 1.21148 1.01928 1.02424 0.87970 1.21452 0.93333 0.92165 1.00374 0.93912 0.91999 0.96369 0.96398 0.91793 0.94046 0.93028 0.94093 0.94007 0.75088 0.84279 0.83874 0.73659 0.75841 0.79862 0.81894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 8.03 71.98 0.58 -4.38 16 2 C 0.05 2.22 0.50 -52.93 -0.03 2.20 16 3 C -0.12 -5.04 8.11 71.98 0.58 -4.45 16 4 C -0.53 -27.07 8.01 25.60 0.20 -26.87 16 5 H 0.04 2.28 7.75 -2.91 -0.02 2.26 16 6 C 0.03 1.57 5.13 84.66 0.43 2.01 16 7 N -0.90 -46.05 9.45 21.45 0.20 -45.84 16 8 Si 0.94 41.63 29.54 68.60 2.03 43.65 16 9 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 C 0.15 5.86 4.50 86.38 0.39 6.25 16 13 N -0.70 -22.08 4.85 -466.10 -2.26 -24.34 16 14 C 0.55 17.54 7.77 86.74 0.67 18.21 16 15 O -0.59 -23.79 16.34 -3.97 -0.06 -23.85 16 16 C -0.14 -3.24 5.88 -20.08 -0.12 -3.36 16 17 C -0.05 -1.02 9.58 22.50 0.22 -0.81 16 18 C -0.12 -2.41 9.66 22.34 0.22 -2.19 16 19 C 0.15 2.55 6.70 38.23 0.26 2.80 16 20 N -0.33 -5.56 3.85 -187.12 -0.72 -6.28 16 21 C 0.04 0.38 10.92 83.24 0.91 1.29 16 22 C -0.08 -0.95 11.86 83.71 0.99 0.05 16 23 N -0.26 -5.69 12.33 -58.72 -0.72 -6.42 16 24 N -0.11 -2.61 13.15 37.02 0.49 -2.13 16 25 C -0.11 -1.31 9.46 22.34 0.21 -1.10 16 26 C -0.05 -0.84 9.53 22.50 0.21 -0.62 16 27 H 0.04 1.40 6.71 -2.38 -0.02 1.38 16 28 H 0.06 2.83 6.25 -2.39 -0.01 2.82 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.06 2.97 6.10 -2.39 -0.01 2.96 16 32 H 0.04 1.36 6.86 -2.38 -0.02 1.34 16 33 H 0.26 12.92 8.31 -92.71 -0.77 12.15 16 34 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.41 10.47 4.18 -92.71 -0.39 10.08 16 37 H 0.14 3.34 7.64 -2.91 -0.02 3.31 16 38 H 0.14 2.84 7.72 -2.91 -0.02 2.82 16 39 H 0.25 -0.53 7.16 -2.91 -0.02 -0.55 16 40 H 0.23 0.81 8.06 -2.91 -0.02 0.78 16 41 H 0.18 0.44 6.82 -2.91 -0.02 0.42 16 42 H 0.16 1.84 6.39 -2.91 -0.02 1.82 16 Total: -1.00 -69.72 349.01 5.35 -64.37 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.67 Total: 11.82 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 5.73 Total: -10.99 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -3.02 Total: -85.01 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.06 Total: -23.85 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -69.72 5.35 -64.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457995484.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.278 kcal (2) G-P(sol) polarization free energy of solvation -69.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds