Wall clock time and date at job start Tue Mar 31 2020 11:44:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52994 * 109.47137 * 2 1
4 4 C 1.50699 * 109.46766 * 239.99991 * 2 1 3
5 5 H 1.08005 * 120.00422 * 237.00589 * 4 2 1
6 6 C 1.37880 * 120.00007 * 57.00727 * 4 2 1
7 7 N 1.31509 * 119.99903 * 5.54149 * 6 4 2
8 8 Si 1.86803 * 120.00066 * 185.53736 * 6 4 2
9 9 H 1.48501 * 109.46728 * 85.00209 * 8 6 4
10 10 H 1.48498 * 109.47089 * 205.00291 * 8 6 4
11 11 H 1.48501 * 109.47132 * 325.00661 * 8 6 4
12 12 C 1.53002 * 109.47149 * 120.00575 * 2 1 3
13 13 N 1.46506 * 109.46806 * 299.99708 * 12 2 1
14 14 C 1.34771 * 119.99909 * 180.02562 * 13 12 2
15 15 O 1.21581 * 120.00194 * 359.97438 * 14 13 12
16 16 C 1.47695 * 120.00068 * 179.97438 * 14 13 12
17 17 C 1.39693 * 120.07707 * 179.97438 * 16 14 13
18 18 C 1.37738 * 119.91555 * 179.97438 * 17 16 14
19 19 C 1.39026 * 120.08179 * 0.02562 * 18 17 16
20 20 N 1.39938 * 119.92095 * 179.97438 * 19 18 17
21 21 C 1.36317 * 126.86582 * 180.02562 * 20 19 18
22 22 C 1.34966 * 106.77826 * 179.97438 * 21 20 19
23 23 N 1.33369 * 109.01343 * 359.97438 * 22 21 20
24 24 N 1.28760 * 109.93195 * 0.02562 * 23 22 21
25 25 C 1.39029 * 120.15775 * 0.25511 * 19 18 17
26 26 C 1.37742 * 120.07925 * 359.48751 * 25 19 18
27 27 H 1.09005 * 109.46628 * 293.93008 * 1 2 3
28 28 H 1.08997 * 109.47129 * 53.92953 * 1 2 3
29 29 H 1.08999 * 109.47181 * 173.93736 * 1 2 3
30 30 H 1.09008 * 109.47031 * 179.97438 * 3 2 1
31 31 H 1.08994 * 109.47419 * 300.00163 * 3 2 1
32 32 H 1.09004 * 109.46895 * 60.00550 * 3 2 1
33 33 H 0.97000 * 120.00315 * 179.97438 * 7 6 4
34 34 H 1.08996 * 109.47092 * 180.02562 * 12 2 1
35 35 H 1.08998 * 109.47133 * 59.99135 * 12 2 1
36 36 H 0.96999 * 120.00091 * 0.02562 * 13 12 2
37 37 H 1.07996 * 120.04628 * 359.96193 * 17 16 14
38 38 H 1.08004 * 119.96220 * 180.02562 * 18 17 16
39 39 H 1.07996 * 126.60754 * 359.71192 * 21 20 19
40 40 H 1.07994 * 125.49041 * 179.97438 * 22 21 20
41 41 H 1.08000 * 119.95572 * 179.72167 * 25 19 18
42 42 H 1.07996 * 120.03883 * 180.25763 * 26 25 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6925 -1.5595 -1.1322
6 6 1.6490 -0.2764 -2.4818
7 7 0.9350 0.8208 -2.6071
8 14 2.1440 -1.2470 -3.9992
9 1 1.1617 -2.3360 -4.2323
10 1 2.1707 -0.3437 -5.1776
11 1 3.4930 -1.8328 -3.7938
12 6 2.0401 -0.7214 1.2492
13 7 1.5517 -0.0308 2.4454
14 6 1.8777 -0.4910 3.6695
15 8 2.5767 -1.4795 3.7810
16 6 1.3859 0.2055 4.8754
17 6 1.7224 -0.2704 6.1449
18 6 1.2624 0.3820 7.2674
19 6 0.4637 1.5126 7.1380
20 7 -0.0023 2.1725 8.2806
21 6 -0.7889 3.2852 8.3187
22 6 -0.9929 3.5736 9.6213
23 7 -0.3565 2.6725 10.3707
24 7 0.2459 1.8207 9.6161
25 6 0.1220 1.9857 5.8761
26 6 0.5828 1.3414 4.7492
27 1 -0.3633 0.4169 0.9394
28 1 -0.3633 0.6051 -0.8306
29 1 -0.3633 -1.0219 -0.1085
30 1 3.1301 1.4424 0.0005
31 1 1.6767 1.9563 -0.8899
32 1 1.6767 1.9562 0.8901
33 1 0.6657 1.1264 -3.4874
34 1 3.1300 -0.7210 1.2494
35 1 1.6766 -1.7490 1.2492
36 1 0.9938 0.7577 2.3565
37 1 2.3423 -1.1490 6.2463
38 1 1.5224 0.0149 8.2492
39 1 -1.1713 3.8330 7.4702
40 1 -1.5772 4.4008 9.9963
41 1 -0.5023 2.8616 5.7793
42 1 0.3204 1.7119 3.7693
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000457995484.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:44:45
Heat of formation + Delta-G solvation = 71.905118 kcal
Electronic energy + Delta-G solvation = -24855.634344 eV
Core-core repulsion = 21223.322461 eV
Total energy + Delta-G solvation = -3632.311883 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.148 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-43.23271 -41.33520 -39.71914 -38.09613 -35.58840 -35.05868 -33.00348 -32.34781
-31.66121 -30.85504 -27.54801 -27.53940 -27.02675 -25.54630 -24.45722 -23.15926
-22.19210 -21.53629 -20.63929 -19.70419 -19.01119 -17.76870 -17.05228 -16.92273
-16.63997 -16.31655 -16.31096 -15.99806 -15.62021 -15.28565 -14.90049 -14.72298
-14.67434 -14.59414 -14.02589 -13.97565 -13.81311 -13.23244 -13.07310 -12.95094
-12.69109 -12.60215 -12.29603 -12.25141 -12.16903 -12.14613 -12.12432 -11.46729
-11.32539 -11.00092 -10.69389 -10.46061 -10.38147 -10.26321 -10.04607 -9.56949
-8.02459 -6.15960 -0.83114 0.14427 0.52683 1.05951 1.43218 1.46594
1.53295 1.54606 1.80164 2.19892 2.48814 2.69153 3.22001 3.28162
3.52469 3.66063 3.70853 3.85278 4.04369 4.14604 4.24537 4.36895
4.43681 4.48641 4.52145 4.72491 4.81640 4.88666 5.00838 5.05508
5.06931 5.10526 5.16624 5.21213 5.26215 5.32696 5.39135 5.56829
5.69426 5.70397 5.78792 6.16931 6.22783 6.44467 6.59367 6.87553
7.05331 7.21044 7.51189 8.96927
Molecular weight = 314.15amu
Principal moments of inertia in cm(-1)
A = 0.032902 B = 0.002383 C = 0.002257
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 850.815056 B =11746.779443 C =12403.596672
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C 0.051 3.949
3 C -0.122 4.122
4 C -0.530 4.530
5 H 0.043 0.957
6 C 0.031 3.969
7 N -0.896 5.896
8 Si 0.941 3.059
9 H -0.279 1.279
10 H -0.284 1.284
11 H -0.278 1.278
12 C 0.146 3.854
13 N -0.700 5.700
14 C 0.546 3.454
15 O -0.586 6.586
16 C -0.138 4.138
17 C -0.045 4.045
18 C -0.121 4.121
19 C 0.152 3.848
20 N -0.326 5.326
21 C 0.041 3.959
22 C -0.079 4.079
23 N -0.263 5.263
24 N -0.111 5.111
25 C -0.114 4.114
26 C -0.054 4.054
27 H 0.042 0.958
28 H 0.061 0.939
29 H 0.017 0.983
30 H 0.017 0.983
31 H 0.063 0.937
32 H 0.041 0.959
33 H 0.260 0.740
34 H 0.041 0.959
35 H 0.042 0.958
36 H 0.410 0.590
37 H 0.139 0.861
38 H 0.143 0.857
39 H 0.247 0.753
40 H 0.225 0.775
41 H 0.184 0.816
42 H 0.164 0.836
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.105 9.901 17.884 21.641
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.050 3.950
3 C -0.180 4.180
4 C -0.568 4.568
5 H 0.062 0.938
6 C -0.169 4.169
7 N -0.535 5.535
8 Si 0.768 3.232
9 H -0.205 1.205
10 H -0.209 1.209
11 H -0.203 1.203
12 C 0.022 3.978
13 N -0.352 5.352
14 C 0.335 3.665
15 O -0.469 6.469
16 C -0.142 4.142
17 C -0.065 4.065
18 C -0.141 4.141
19 C 0.060 3.940
20 N -0.108 5.108
21 C -0.108 4.108
22 C -0.235 4.235
23 N -0.132 5.132
24 N -0.088 5.088
25 C -0.135 4.135
26 C -0.073 4.073
27 H 0.061 0.939
28 H 0.080 0.920
29 H 0.036 0.964
30 H 0.036 0.964
31 H 0.082 0.918
32 H 0.060 0.940
33 H 0.070 0.930
34 H 0.059 0.941
35 H 0.060 0.940
36 H 0.249 0.751
37 H 0.157 0.843
38 H 0.161 0.839
39 H 0.263 0.737
40 H 0.242 0.758
41 H 0.201 0.799
42 H 0.181 0.819
Dipole moment (debyes) X Y Z Total
from point charges -6.009 8.352 18.788 21.421
hybrid contribution -0.094 0.000 -1.791 1.794
sum -6.103 8.352 16.997 19.897
Atomic orbital electron populations
1.21670 0.96853 0.99319 0.99970 1.18367 0.93398 0.93110 0.90089
1.21706 0.97978 0.97694 1.00594 1.21252 1.29501 1.14414 0.91647
0.93848 1.25399 0.95243 0.95550 1.00747 1.69903 1.38123 1.21823
1.23646 0.85841 0.78468 0.78884 0.79996 1.20525 1.20924 1.20290
1.21339 0.97230 0.95273 0.83953 1.46027 1.52283 1.31827 1.05025
1.18668 0.79977 0.83779 0.84124 1.90746 1.40365 1.28289 1.87450
1.20051 1.02713 0.98635 0.92832 1.21140 0.96473 0.98809 0.90067
1.20879 0.98435 0.94814 1.00007 1.17957 0.98044 0.94119 0.83927
1.48163 1.35124 1.20850 1.06615 1.24532 0.94640 0.89132 1.02538
1.24010 1.06548 1.03329 0.89589 1.74329 1.07448 1.02999 1.28410
1.82154 1.22903 1.20675 0.83043 1.21148 1.01928 1.02424 0.87970
1.21452 0.93333 0.92165 1.00374 0.93912 0.91999 0.96369 0.96398
0.91793 0.94046 0.93028 0.94093 0.94007 0.75088 0.84279 0.83874
0.73659 0.75841 0.79862 0.81894
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.96 8.03 71.98 0.58 -4.38 16
2 C 0.05 2.22 0.50 -52.93 -0.03 2.20 16
3 C -0.12 -5.04 8.11 71.98 0.58 -4.45 16
4 C -0.53 -27.07 8.01 25.60 0.20 -26.87 16
5 H 0.04 2.28 7.75 -2.91 -0.02 2.26 16
6 C 0.03 1.57 5.13 84.66 0.43 2.01 16
7 N -0.90 -46.05 9.45 21.45 0.20 -45.84 16
8 Si 0.94 41.63 29.54 68.60 2.03 43.65 16
9 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16
10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16
11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16
12 C 0.15 5.86 4.50 86.38 0.39 6.25 16
13 N -0.70 -22.08 4.85 -466.10 -2.26 -24.34 16
14 C 0.55 17.54 7.77 86.74 0.67 18.21 16
15 O -0.59 -23.79 16.34 -3.97 -0.06 -23.85 16
16 C -0.14 -3.24 5.88 -20.08 -0.12 -3.36 16
17 C -0.05 -1.02 9.58 22.50 0.22 -0.81 16
18 C -0.12 -2.41 9.66 22.34 0.22 -2.19 16
19 C 0.15 2.55 6.70 38.23 0.26 2.80 16
20 N -0.33 -5.56 3.85 -187.12 -0.72 -6.28 16
21 C 0.04 0.38 10.92 83.24 0.91 1.29 16
22 C -0.08 -0.95 11.86 83.71 0.99 0.05 16
23 N -0.26 -5.69 12.33 -58.72 -0.72 -6.42 16
24 N -0.11 -2.61 13.15 37.02 0.49 -2.13 16
25 C -0.11 -1.31 9.46 22.34 0.21 -1.10 16
26 C -0.05 -0.84 9.53 22.50 0.21 -0.62 16
27 H 0.04 1.40 6.71 -2.38 -0.02 1.38 16
28 H 0.06 2.83 6.25 -2.39 -0.01 2.82 16
29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16
30 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16
31 H 0.06 2.97 6.10 -2.39 -0.01 2.96 16
32 H 0.04 1.36 6.86 -2.38 -0.02 1.34 16
33 H 0.26 12.92 8.31 -92.71 -0.77 12.15 16
34 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16
35 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16
36 H 0.41 10.47 4.18 -92.71 -0.39 10.08 16
37 H 0.14 3.34 7.64 -2.91 -0.02 3.31 16
38 H 0.14 2.84 7.72 -2.91 -0.02 2.82 16
39 H 0.25 -0.53 7.16 -2.91 -0.02 -0.55 16
40 H 0.23 0.81 8.06 -2.91 -0.02 0.78 16
41 H 0.18 0.44 6.82 -2.91 -0.02 0.42 16
42 H 0.16 1.84 6.39 -2.91 -0.02 1.82 16
Total: -1.00 -69.72 349.01 5.35 -64.37
By element:
Atomic # 1 Polarization: 11.15 SS G_CDS: 0.67 Total: 11.82 kcal
Atomic # 6 Polarization: -16.72 SS G_CDS: 5.73 Total: -10.99 kcal
Atomic # 7 Polarization: -81.99 SS G_CDS: -3.02 Total: -85.01 kcal
Atomic # 8 Polarization: -23.79 SS G_CDS: -0.06 Total: -23.85 kcal
Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal
Total: -69.72 5.35 -64.37 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000457995484.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 136.278 kcal
(2) G-P(sol) polarization free energy of solvation -69.724 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.554 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.351 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.373 kcal
(6) G-S(sol) free energy of system = (1) + (5) 71.905 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds