Wall clock time and date at job start Tue Mar 31 2020 11:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47174 * 2 1 4 4 C 1.50700 * 109.47021 * 240.00152 * 2 1 3 5 5 H 1.07996 * 119.99874 * 241.34895 * 4 2 1 6 6 C 1.37874 * 119.99928 * 61.34491 * 4 2 1 7 7 N 1.31516 * 120.00140 * 193.97568 * 6 4 2 8 8 Si 1.86799 * 120.00200 * 13.97949 * 6 4 2 9 9 H 1.48498 * 109.47289 * 84.54743 * 8 6 4 10 10 H 1.48496 * 109.47421 * 204.54717 * 8 6 4 11 11 H 1.48502 * 109.46888 * 324.54797 * 8 6 4 12 12 C 1.53000 * 109.47244 * 120.00372 * 2 1 3 13 13 N 1.46499 * 109.46927 * 299.99587 * 12 2 1 14 14 C 1.34779 * 120.00111 * 179.97438 * 13 12 2 15 15 O 1.21616 * 119.99750 * 0.02562 * 14 13 12 16 16 C 1.47316 * 120.00274 * 180.02562 * 14 13 12 17 17 C 1.37915 * 126.80195 * 0.03055 * 16 14 13 18 18 N 1.34199 * 107.89528 * 179.97438 * 17 16 14 19 19 H 0.96996 * 125.16819 * 180.02562 * 18 17 16 20 20 N 1.39773 * 109.66763 * 0.02562 * 18 17 16 21 21 C 1.31384 * 109.06653 * 359.97438 * 20 18 17 22 22 C 1.48250 * 126.51199 * 179.97438 * 21 20 18 23 23 C 1.39385 * 119.72806 * 334.75584 * 22 21 20 24 24 C 1.38391 * 119.06219 * 179.72667 * 23 22 21 25 25 C 1.38798 * 118.51219 * 0.53611 * 24 23 22 26 26 C 1.38254 * 119.37643 * 359.72848 * 25 24 23 27 27 N 1.31758 * 120.89524 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.46717 * 309.36727 * 1 2 3 29 29 H 1.09000 * 109.47205 * 69.36079 * 1 2 3 30 30 H 1.08997 * 109.47164 * 189.36675 * 1 2 3 31 31 H 1.08997 * 109.47588 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47270 * 300.00103 * 3 2 1 33 33 H 1.09002 * 109.47158 * 60.00437 * 3 2 1 34 34 H 0.97004 * 119.99997 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.46944 * 180.02562 * 12 2 1 36 36 H 1.08996 * 109.47146 * 59.99912 * 12 2 1 37 37 H 0.97001 * 120.00448 * 0.02562 * 13 12 2 38 38 H 1.07997 * 126.05674 * 359.94410 * 17 16 14 39 39 H 1.07998 * 120.46803 * 359.97438 * 23 22 21 40 40 H 1.07996 * 120.74179 * 180.27743 * 24 23 22 41 41 H 1.07995 * 120.31233 * 179.69882 * 25 24 23 42 42 H 1.08001 * 119.55278 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6351 -1.6010 -1.1316 6 6 1.7222 -0.2233 -2.4825 7 7 1.9156 -0.9725 -3.5460 8 14 1.0275 1.5007 -2.6684 9 1 2.1416 2.4817 -2.7084 10 1 0.2469 1.5866 -3.9287 11 1 0.1417 1.8043 -1.5158 12 6 2.0400 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8769 -0.4915 3.6695 15 8 2.5761 -1.4803 3.7810 16 6 1.3855 0.2026 4.8724 17 6 0.5891 1.3279 4.9095 18 7 0.3702 1.6359 6.1972 19 1 -0.1607 2.3851 6.5100 20 7 1.0233 0.7133 7.0192 21 6 1.6459 -0.1660 6.2672 22 6 2.4583 -1.3127 6.7395 23 6 3.0570 -1.2641 7.9973 24 6 3.8077 -2.3445 8.4267 25 6 3.9448 -3.4349 7.5789 26 6 3.3281 -3.4137 6.3417 27 7 2.6138 -2.3746 5.9595 28 1 -0.3633 0.6519 0.7945 29 1 -0.3633 0.3622 -0.9617 30 1 -0.3633 -1.0139 0.1673 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6978 -0.6296 -4.4269 35 1 3.1300 -0.7209 1.2494 36 1 1.6767 -1.7489 1.2491 37 1 0.9938 0.7578 2.3565 38 1 0.2092 1.8663 4.0538 39 1 2.9334 -0.3972 8.6295 40 1 4.2797 -2.3376 9.3980 41 1 4.5281 -4.2915 7.8825 42 1 3.4332 -4.2604 5.6795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458012939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:25 Heat of formation + Delta-G solvation = 73.858246 kcal Electronic energy + Delta-G solvation = -25638.807982 eV Core-core repulsion = 22006.580793 eV Total energy + Delta-G solvation = -3632.227189 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.19746 -40.69048 -40.15185 -38.14436 -34.87587 -33.94206 -33.40755 -33.28671 -31.32612 -31.01479 -27.97261 -27.48782 -26.86231 -25.19347 -24.49393 -23.68482 -21.60198 -20.87846 -20.82283 -19.39776 -18.08801 -17.69840 -17.52811 -16.94008 -16.77336 -16.48672 -16.31274 -16.21621 -15.61758 -15.00606 -14.91407 -14.82632 -14.64577 -14.37070 -14.28324 -14.09333 -13.93312 -13.70654 -13.54373 -12.82794 -12.66836 -12.35856 -12.20106 -12.05990 -11.90676 -11.71045 -11.26894 -11.03950 -10.81084 -10.62921 -10.57272 -10.33619 -10.06268 -9.98498 -9.76302 -9.47674 -8.26806 -6.28533 -0.20065 0.45367 0.60000 1.24003 1.38803 1.41067 1.54348 1.69534 2.38378 2.46900 2.61815 3.02918 3.08164 3.09720 3.57369 3.86489 4.07295 4.09433 4.16587 4.22994 4.25119 4.40272 4.42638 4.47474 4.50284 4.66354 4.82657 4.85571 4.90033 4.92963 5.01394 5.10236 5.12369 5.22483 5.26263 5.30172 5.51270 5.65943 5.79543 5.82044 5.86479 6.20079 6.35092 6.40310 6.75495 6.91808 7.19734 7.36144 7.62754 8.90783 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.020648 B = 0.003347 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.712844 B = 8363.895210 C = 9461.174277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.029 3.971 3 C -0.146 4.146 4 C -0.519 4.519 5 H 0.023 0.977 6 C 0.013 3.987 7 N -0.950 5.950 8 Si 0.947 3.053 9 H -0.282 1.282 10 H -0.317 1.317 11 H -0.197 1.197 12 C 0.166 3.834 13 N -0.712 5.712 14 C 0.571 3.429 15 O -0.549 6.549 16 C -0.294 4.294 17 C 0.135 3.865 18 N -0.440 5.440 19 H 0.465 0.535 20 N -0.287 5.287 21 C 0.150 3.850 22 C 0.152 3.848 23 C -0.145 4.145 24 C -0.081 4.081 25 C -0.154 4.154 26 C 0.075 3.925 27 N -0.452 5.452 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.036 0.964 31 H 0.043 0.957 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.264 0.736 35 H 0.035 0.965 36 H 0.034 0.966 37 H 0.406 0.594 38 H 0.237 0.763 39 H 0.150 0.850 40 H 0.175 0.825 41 H 0.170 0.830 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.429 7.970 26.319 27.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.028 3.972 3 C -0.203 4.203 4 C -0.557 4.557 5 H 0.041 0.959 6 C -0.184 4.184 7 N -0.589 5.589 8 Si 0.776 3.224 9 H -0.209 1.209 10 H -0.247 1.247 11 H -0.121 1.121 12 C 0.042 3.958 13 N -0.366 5.366 14 C 0.359 3.641 15 O -0.426 6.426 16 C -0.309 4.309 17 C -0.017 4.017 18 N -0.149 5.149 19 H 0.314 0.686 20 N -0.111 5.111 21 C -0.018 4.018 22 C 0.014 3.986 23 C -0.167 4.167 24 C -0.107 4.107 25 C -0.174 4.174 26 C -0.084 4.084 27 N -0.162 5.162 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.243 0.757 38 H 0.253 0.747 39 H 0.168 0.832 40 H 0.192 0.808 41 H 0.187 0.813 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.614 7.608 26.588 27.890 hybrid contribution 0.251 0.467 -1.146 1.263 sum -3.363 8.075 25.442 26.903 Atomic orbital electron populations 1.22209 0.95910 1.00605 1.00982 1.18639 0.93870 0.93160 0.91558 1.22285 1.00855 0.96691 1.00432 1.21080 1.32808 1.11007 0.90817 0.95851 1.25921 0.95432 1.01904 0.95104 1.70133 1.50925 1.38436 0.99415 0.86303 0.79446 0.79560 0.77077 1.20936 1.24677 1.12077 1.20891 0.96886 0.94757 0.83300 1.45782 1.54118 1.32265 1.04455 1.17598 0.80281 0.83634 0.82632 1.90846 1.38711 1.26575 1.86470 1.21339 1.13545 1.03400 0.92654 1.23630 0.93814 0.94229 0.89984 1.45937 1.40545 1.24955 1.03415 0.68588 1.77169 1.13883 1.02990 1.17031 1.21519 0.96047 0.93678 0.90598 1.18717 0.96864 0.91495 0.91493 1.22292 0.97911 1.01089 0.95365 1.21943 0.95900 0.91712 1.01106 1.22639 0.99719 1.00672 0.94402 1.23123 0.93737 0.95788 0.95736 1.67817 1.15501 1.00037 1.32809 0.91032 0.93609 0.94438 0.93821 0.94636 0.90270 0.92750 0.94627 0.94803 0.75657 0.74670 0.83239 0.80767 0.81256 0.82296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 7.53 71.98 0.54 -4.66 16 2 C 0.03 1.23 0.50 -52.93 -0.03 1.20 16 3 C -0.15 -5.33 7.52 71.98 0.54 -4.78 16 4 C -0.52 -29.08 8.62 25.60 0.22 -28.86 16 5 H 0.02 1.50 7.99 -2.91 -0.02 1.47 16 6 C 0.01 0.76 5.32 84.65 0.45 1.21 16 7 N -0.95 -59.61 13.96 21.45 0.30 -59.31 16 8 Si 0.95 42.34 22.79 68.60 1.56 43.90 16 9 H -0.28 -12.35 7.10 99.48 0.71 -11.65 16 10 H -0.32 -14.69 7.11 99.48 0.71 -13.98 16 11 H -0.20 -7.22 4.65 99.48 0.46 -6.76 16 12 C 0.17 6.86 4.49 86.38 0.39 7.25 16 13 N -0.71 -22.64 4.99 -466.48 -2.33 -24.97 16 14 C 0.57 20.13 7.81 86.63 0.68 20.80 16 15 O -0.55 -24.23 13.67 -4.08 -0.06 -24.28 16 16 C -0.29 -8.11 6.31 -18.78 -0.12 -8.23 16 17 C 0.13 2.08 11.50 84.25 0.97 3.05 16 18 N -0.44 -6.07 7.20 -56.43 -0.41 -6.48 16 19 H 0.46 2.17 8.96 -213.54 -1.91 0.25 16 20 N -0.29 -6.55 12.53 -44.54 -0.56 -7.11 16 21 C 0.15 4.32 7.11 44.06 0.31 4.63 16 22 C 0.15 4.62 6.63 41.96 0.28 4.90 16 23 C -0.15 -3.25 9.75 22.58 0.22 -3.03 16 24 C -0.08 -1.37 10.17 22.44 0.23 -1.15 16 25 C -0.15 -2.84 10.11 22.41 0.23 -2.62 16 26 C 0.07 2.02 11.17 84.71 0.95 2.96 16 27 N -0.45 -15.54 7.06 -184.88 -1.31 -16.84 16 28 H 0.07 1.94 7.13 -2.39 -0.02 1.92 16 29 H 0.05 1.79 4.30 -2.39 -0.01 1.78 16 30 H 0.04 1.46 8.12 -2.39 -0.02 1.44 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.34 2.25 -2.38 -0.01 1.34 16 33 H 0.08 2.10 6.86 -2.39 -0.02 2.08 16 34 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 35 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.41 9.48 5.21 -92.71 -0.48 9.00 16 38 H 0.24 1.20 7.48 -2.91 -0.02 1.17 16 39 H 0.15 2.76 8.04 -2.91 -0.02 2.73 16 40 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 42 H 0.16 3.89 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -86.42 338.86 1.50 -84.91 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -1.56 Total: 17.51 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 5.86 Total: -7.33 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -4.30 Total: -114.71 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.06 Total: -24.28 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.56 Total: 43.90 kcal Total: -86.42 1.50 -84.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458012939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.772 kcal (2) G-P(sol) polarization free energy of solvation -86.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds