Wall clock time and date at job start Tue Mar 31 2020 10:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46922 * 2 1 4 4 N 1.30519 * 126.34488 * 270.04158 * 3 2 1 5 5 N 1.28607 * 109.67077 * 179.97438 * 4 3 2 6 6 C 1.30522 * 109.67008 * 359.72095 * 5 4 3 7 7 N 1.35495 * 107.30870 * 0.43990 * 6 5 4 8 8 C 1.46496 * 126.97843 * 179.83837 * 7 6 5 9 9 C 1.53005 * 109.47078 * 264.68451 * 8 7 6 10 10 N 1.46496 * 109.47078 * 179.97438 * 9 8 7 11 11 C 1.34782 * 119.99614 * 179.97438 * 10 9 8 12 12 O 1.21584 * 120.00543 * 0.02562 * 11 10 9 13 13 C 1.47645 * 120.00054 * 179.97438 * 11 10 9 14 14 C 1.40019 * 119.89142 * 359.73179 * 13 11 10 15 15 C 1.36313 * 120.10401 * 179.71720 * 14 13 11 16 16 C 1.40893 * 119.89320 * 0.57520 * 15 14 13 17 17 C 1.41108 * 120.10478 * 179.67899 * 16 15 14 18 18 H 1.07999 * 119.99884 * 204.64892 * 17 16 15 19 19 C 1.40225 * 119.99891 * 24.64550 * 17 16 15 20 20 N 1.30640 * 120.00305 * 17.87429 * 19 17 16 21 21 Si 1.86800 * 119.99905 * 197.87730 * 19 17 16 22 22 H 1.48505 * 109.47235 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47370 * 119.99852 * 21 19 17 24 24 H 1.48498 * 109.47233 * 240.00280 * 21 19 17 25 25 C 1.40885 * 119.79010 * 359.69447 * 16 15 14 26 26 C 1.36316 * 119.89491 * 0.02562 * 25 16 15 27 27 H 1.08998 * 109.46876 * 299.99858 * 1 2 3 28 28 H 1.08998 * 109.47527 * 60.00025 * 1 2 3 29 29 H 1.08997 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46876 * 240.00142 * 2 1 3 31 31 H 1.08998 * 109.47527 * 119.99975 * 2 1 3 32 32 H 1.08001 * 126.34267 * 180.29785 * 6 5 4 33 33 H 1.08998 * 109.47482 * 144.69065 * 8 7 6 34 34 H 1.08996 * 109.47507 * 24.68206 * 8 7 6 35 35 H 1.09006 * 109.47091 * 300.00638 * 9 8 7 36 36 H 1.09008 * 109.46935 * 60.00168 * 9 8 7 37 37 H 0.96993 * 120.00398 * 359.97438 * 10 9 8 38 38 H 1.08004 * 119.94683 * 359.97438 * 14 13 11 39 39 H 1.08005 * 120.05573 * 180.25468 * 15 14 13 40 40 H 0.97002 * 120.00131 * 179.97438 * 20 19 17 41 41 H 1.08002 * 120.05430 * 179.97438 * 25 16 15 42 42 H 1.07999 * 119.94723 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2894 2.1504 -1.0513 5 7 2.6997 3.3120 -0.6823 6 6 2.7174 3.3781 0.6211 7 7 2.3001 2.1779 1.0914 8 6 2.1607 1.7814 2.4947 9 6 3.4271 1.0513 2.9466 10 7 3.2880 0.6553 4.3502 11 6 4.2878 -0.0065 4.9659 12 8 5.3053 -0.2745 4.3567 13 6 4.1479 -0.4051 6.3806 14 6 2.9779 -0.0895 7.0821 15 6 2.8418 -0.4605 8.3867 16 6 3.8857 -1.1519 9.0327 17 6 3.7523 -1.5321 10.3850 18 1 4.6322 -1.6873 10.9916 19 6 2.4772 -1.7084 10.9412 20 7 1.4409 -1.8680 10.1619 21 14 2.2603 -1.7149 12.7966 22 1 3.5791 -1.5168 13.4499 23 1 1.3419 -0.6168 13.1915 24 1 1.6877 -3.0168 13.2235 25 6 5.0633 -1.4622 8.3242 26 6 5.1880 -1.0921 7.0182 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.0123 4.2308 1.2148 33 1 1.3018 1.1188 2.6016 34 1 2.0138 2.6688 3.1102 35 1 3.5741 0.1638 2.3311 36 1 4.2862 1.7138 2.8398 37 1 2.4765 0.8694 4.8364 38 1 2.1803 0.4450 6.5875 39 1 1.9373 -0.2203 8.9258 40 1 0.5589 -1.9903 10.5467 41 1 5.8663 -1.9917 8.8154 42 1 6.0905 -1.3292 6.4745 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534798623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:41 Heat of formation + Delta-G solvation = 47.475707 kcal Electronic energy + Delta-G solvation = -24532.759599 eV Core-core repulsion = 20899.388377 eV Total energy + Delta-G solvation = -3633.371222 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.35220 -39.33190 -37.36510 -36.29244 -34.45271 -33.99713 -33.77729 -30.66876 -29.79101 -29.57897 -29.06130 -26.11163 -24.67780 -23.72311 -22.49287 -21.92140 -21.03656 -20.80101 -19.80883 -17.65519 -17.45900 -17.09659 -16.24959 -15.88863 -15.68496 -15.36859 -15.19853 -14.71741 -14.18687 -14.18051 -14.00877 -13.66349 -13.33036 -13.04790 -12.86914 -12.70107 -12.22391 -12.16126 -12.06141 -11.92909 -11.66586 -11.54525 -11.47699 -11.36618 -11.04802 -10.76408 -10.51847 -10.48732 -10.15864 -9.68369 -9.46557 -9.39395 -9.18714 -8.92660 -7.84942 -7.67091 -7.15198 -4.71768 1.55680 2.08464 2.09141 2.69958 2.82058 2.88028 2.92076 2.93689 3.55099 3.65005 3.71000 4.00935 4.13719 4.30596 4.38121 4.43962 4.60032 4.73071 4.86350 5.07068 5.13538 5.25831 5.44744 5.45223 5.52594 5.57489 5.75529 5.79975 5.87411 5.91776 5.96686 6.19905 6.54139 6.63908 6.66394 6.71600 6.90692 7.00795 7.31403 7.50095 7.64005 7.74577 7.94727 7.99986 8.28241 8.51684 8.53663 8.63171 8.85395 9.76590 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.023196 B = 0.002353 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.805287 B =11899.013872 C =12405.087611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.042 4.042 3 C 0.183 3.817 4 N -0.296 5.296 5 N -0.299 5.299 6 C 0.152 3.848 7 N -0.468 5.468 8 C 0.094 3.906 9 C 0.111 3.889 10 N -0.742 5.742 11 C 0.575 3.425 12 O -0.571 6.571 13 C -0.288 4.288 14 C -0.062 4.062 15 C -0.178 4.178 16 C 0.128 3.872 17 C -0.438 4.438 18 H 0.086 0.914 19 C 0.074 3.926 20 N -0.769 5.769 21 Si 0.914 3.086 22 H -0.257 1.257 23 H -0.268 1.268 24 H -0.271 1.271 25 C -0.239 4.239 26 C -0.020 4.020 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.219 0.781 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.399 0.601 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.287 0.713 41 H 0.099 0.901 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.008 5.077 -8.418 11.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.082 4.082 3 C -0.084 4.084 4 N -0.136 5.136 5 N -0.137 5.137 6 C -0.136 4.136 7 N -0.159 5.159 8 C -0.030 4.030 9 C -0.014 4.014 10 N -0.397 5.397 11 C 0.370 3.630 12 O -0.452 6.452 13 C -0.293 4.293 14 C -0.081 4.081 15 C -0.198 4.198 16 C 0.125 3.875 17 C -0.466 4.466 18 H 0.104 0.896 19 C -0.148 4.148 20 N -0.392 5.392 21 Si 0.737 3.263 22 H -0.180 1.180 23 H -0.193 1.193 24 H -0.196 1.196 25 C -0.258 4.258 26 C -0.039 4.039 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.119 0.881 31 H 0.104 0.896 32 H 0.235 0.765 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.235 0.765 38 H 0.106 0.894 39 H 0.138 0.862 40 H 0.098 0.902 41 H 0.117 0.883 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.384 5.264 -10.307 12.764 hybrid contribution -0.741 -0.169 2.498 2.611 sum -6.125 5.095 -7.809 11.156 Atomic orbital electron populations 1.21743 0.93393 1.02850 1.02523 1.20075 0.96769 0.86327 1.04995 1.24954 1.02861 0.97851 0.82767 1.74260 1.16527 0.98999 1.23835 1.74253 1.17423 1.13094 1.08966 1.26484 1.03088 0.90484 0.93525 1.46165 1.49333 1.12255 1.08193 1.22123 1.00151 1.02528 0.78229 1.21381 0.96055 0.99545 0.84433 1.45730 1.21313 1.61799 1.10906 1.18613 0.81480 0.75582 0.87313 1.90662 1.29757 1.57125 1.67658 1.18803 0.99487 1.18610 0.92359 1.20435 0.94523 0.98067 0.95108 1.20979 1.01156 1.03206 0.94408 1.17806 0.90631 0.86524 0.92530 1.19918 0.93122 1.37865 0.95684 0.89560 1.26120 0.95385 0.91885 1.01393 1.69739 1.00894 1.30427 1.38166 0.86157 0.79943 0.78936 0.81277 1.17995 1.19319 1.19591 1.20728 1.00646 1.09941 0.94508 1.20360 0.95894 0.93522 0.94128 0.92743 0.91776 0.91015 0.88084 0.89622 0.76501 0.87776 0.87410 0.91206 0.91128 0.76519 0.89409 0.86151 0.90179 0.88289 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.65 16 2 C -0.04 -0.35 6.19 -27.88 -0.17 -0.52 16 3 C 0.18 2.05 7.28 -154.99 -1.13 0.92 16 4 N -0.30 -4.21 12.21 32.80 0.40 -3.81 16 5 N -0.30 -4.16 12.21 29.69 0.36 -3.80 16 6 C 0.15 1.55 12.74 -89.94 -1.15 0.41 16 7 N -0.47 -4.51 2.75 -115.30 -0.32 -4.82 16 8 C 0.09 0.70 5.93 -4.04 -0.02 0.67 16 9 C 0.11 1.26 6.00 -4.04 -0.02 1.23 16 10 N -0.74 -10.19 5.50 -61.31 -0.34 -10.53 16 11 C 0.57 11.09 7.76 -12.42 -0.10 10.99 16 12 O -0.57 -12.79 16.32 5.29 0.09 -12.70 16 13 C -0.29 -6.08 5.89 -104.73 -0.62 -6.70 16 14 C -0.06 -1.25 9.47 -39.61 -0.38 -1.63 16 15 C -0.18 -4.08 8.64 -39.27 -0.34 -4.42 16 16 C 0.13 3.10 5.58 -106.80 -0.60 2.51 16 17 C -0.44 -10.39 9.04 -37.75 -0.34 -10.74 16 18 H 0.09 1.96 7.91 -52.49 -0.42 1.55 16 19 C 0.07 1.63 5.14 -17.31 -0.09 1.55 16 20 N -0.77 -17.45 10.95 55.56 0.61 -16.84 16 21 Si 0.91 16.42 29.60 -169.99 -5.03 11.39 16 22 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 23 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 24 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 25 C -0.24 -5.51 9.73 -39.27 -0.38 -5.89 16 26 C -0.02 -0.44 9.52 -39.61 -0.38 -0.82 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.65 7.62 -51.93 -0.40 0.25 16 32 H 0.22 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.10 0.63 8.02 -51.93 -0.42 0.22 16 34 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.88 7.82 -51.93 -0.41 0.47 16 36 H 0.07 0.89 8.14 -51.92 -0.42 0.46 16 37 H 0.40 4.54 6.47 -40.82 -0.26 4.28 16 38 H 0.09 1.43 6.37 -52.48 -0.33 1.09 16 39 H 0.12 2.79 6.16 -52.48 -0.32 2.47 16 40 H 0.29 5.81 8.29 -40.82 -0.34 5.47 16 41 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 42 H 0.10 2.20 7.63 -52.49 -0.40 1.80 16 LS Contribution 360.95 15.07 5.44 5.44 Total: -1.00 -30.94 360.95 -9.60 -40.54 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -5.47 Total: 8.22 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -5.34 Total: -13.08 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.72 Total: -39.81 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 16.42 SS G_CDS: -5.03 Total: 11.39 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.94 -9.60 -40.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534798623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.017 kcal (2) G-P(sol) polarization free energy of solvation -30.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds