Wall clock time and date at job start Tue Mar 31 2020 10:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46922 * 2 1 4 4 N 1.30519 * 126.34488 * 270.04158 * 3 2 1 5 5 N 1.28607 * 109.67077 * 179.97438 * 4 3 2 6 6 C 1.30522 * 109.67008 * 359.72095 * 5 4 3 7 7 N 1.35495 * 107.30870 * 0.43990 * 6 5 4 8 8 C 1.46496 * 126.97843 * 179.83837 * 7 6 5 9 9 C 1.53005 * 109.47078 * 264.68451 * 8 7 6 10 10 N 1.46496 * 109.47078 * 179.97438 * 9 8 7 11 11 C 1.34782 * 119.99614 * 179.97438 * 10 9 8 12 12 O 1.21584 * 120.00543 * 0.02562 * 11 10 9 13 13 C 1.47645 * 120.00054 * 179.97438 * 11 10 9 14 14 C 1.40019 * 119.89142 * 359.73179 * 13 11 10 15 15 C 1.36313 * 120.10401 * 179.71720 * 14 13 11 16 16 C 1.40893 * 119.89320 * 0.57520 * 15 14 13 17 17 C 1.41108 * 120.10478 * 179.67899 * 16 15 14 18 18 H 1.07999 * 119.99884 * 204.64892 * 17 16 15 19 19 C 1.40225 * 119.99891 * 24.64550 * 17 16 15 20 20 N 1.30640 * 120.00305 * 17.87429 * 19 17 16 21 21 Si 1.86800 * 119.99905 * 197.87730 * 19 17 16 22 22 H 1.48505 * 109.47235 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47370 * 119.99852 * 21 19 17 24 24 H 1.48498 * 109.47233 * 240.00280 * 21 19 17 25 25 C 1.40885 * 119.79010 * 359.69447 * 16 15 14 26 26 C 1.36316 * 119.89491 * 0.02562 * 25 16 15 27 27 H 1.08998 * 109.46876 * 299.99858 * 1 2 3 28 28 H 1.08998 * 109.47527 * 60.00025 * 1 2 3 29 29 H 1.08997 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46876 * 240.00142 * 2 1 3 31 31 H 1.08998 * 109.47527 * 119.99975 * 2 1 3 32 32 H 1.08001 * 126.34267 * 180.29785 * 6 5 4 33 33 H 1.08998 * 109.47482 * 144.69065 * 8 7 6 34 34 H 1.08996 * 109.47507 * 24.68206 * 8 7 6 35 35 H 1.09006 * 109.47091 * 300.00638 * 9 8 7 36 36 H 1.09008 * 109.46935 * 60.00168 * 9 8 7 37 37 H 0.96993 * 120.00398 * 359.97438 * 10 9 8 38 38 H 1.08004 * 119.94683 * 359.97438 * 14 13 11 39 39 H 1.08005 * 120.05573 * 180.25468 * 15 14 13 40 40 H 0.97002 * 120.00131 * 179.97438 * 20 19 17 41 41 H 1.08002 * 120.05430 * 179.97438 * 25 16 15 42 42 H 1.07999 * 119.94723 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2894 2.1504 -1.0513 5 7 2.6997 3.3120 -0.6823 6 6 2.7174 3.3781 0.6211 7 7 2.3001 2.1779 1.0914 8 6 2.1607 1.7814 2.4947 9 6 3.4271 1.0513 2.9466 10 7 3.2880 0.6553 4.3502 11 6 4.2878 -0.0065 4.9659 12 8 5.3053 -0.2745 4.3567 13 6 4.1479 -0.4051 6.3806 14 6 2.9779 -0.0895 7.0821 15 6 2.8418 -0.4605 8.3867 16 6 3.8857 -1.1519 9.0327 17 6 3.7523 -1.5321 10.3850 18 1 4.6322 -1.6873 10.9916 19 6 2.4772 -1.7084 10.9412 20 7 1.4409 -1.8680 10.1619 21 14 2.2603 -1.7149 12.7966 22 1 3.5791 -1.5168 13.4499 23 1 1.3419 -0.6168 13.1915 24 1 1.6877 -3.0168 13.2235 25 6 5.0633 -1.4622 8.3242 26 6 5.1880 -1.0921 7.0182 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.0123 4.2308 1.2148 33 1 1.3018 1.1188 2.6016 34 1 2.0138 2.6688 3.1102 35 1 3.5741 0.1638 2.3311 36 1 4.2862 1.7138 2.8398 37 1 2.4765 0.8694 4.8364 38 1 2.1803 0.4450 6.5875 39 1 1.9373 -0.2203 8.9258 40 1 0.5589 -1.9903 10.5467 41 1 5.8663 -1.9917 8.8154 42 1 6.0905 -1.3292 6.4745 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534798623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:40 Heat of formation + Delta-G solvation = 30.830824 kcal Electronic energy + Delta-G solvation = -24533.481375 eV Core-core repulsion = 20899.388377 eV Total energy + Delta-G solvation = -3634.092998 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.17172 -40.82866 -38.97016 -37.30752 -35.67318 -35.34434 -34.73190 -32.22544 -31.29475 -30.58883 -30.15879 -27.67036 -25.51377 -24.64570 -23.49321 -23.23137 -22.70530 -21.70635 -21.15962 -19.36406 -18.69461 -18.04485 -17.24659 -17.20244 -16.74097 -16.59195 -16.15396 -15.74681 -15.57808 -15.48464 -15.02563 -14.81306 -14.76727 -14.46661 -13.95557 -13.71796 -13.62871 -13.46421 -13.22673 -12.90552 -12.85421 -12.72426 -12.60369 -12.40496 -12.37596 -12.15788 -11.76607 -11.37032 -11.33884 -11.31285 -11.11641 -10.77971 -10.25836 -10.19497 -9.56184 -9.40432 -8.79694 -6.47922 0.43601 0.77716 1.16550 1.33630 1.39212 1.42703 1.55569 1.83846 2.10755 2.17925 2.41282 2.77785 3.30129 3.50702 3.55367 3.69892 3.73322 3.97505 4.14029 4.25797 4.27576 4.31560 4.33845 4.44579 4.45126 4.53634 4.74779 4.85163 4.93821 4.97839 5.03889 5.10593 5.14645 5.16525 5.30325 5.30984 5.40600 5.59527 5.82621 5.88208 5.94214 6.00256 6.24242 6.54855 6.64508 6.78111 6.89754 7.39103 7.69116 8.15416 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.023196 B = 0.002353 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.805287 B =11899.013872 C =12405.087611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C 0.183 3.817 4 N -0.341 5.341 5 N -0.347 5.347 6 C 0.163 3.837 7 N -0.467 5.467 8 C 0.102 3.898 9 C 0.114 3.886 10 N -0.718 5.718 11 C 0.576 3.424 12 O -0.606 6.606 13 C -0.293 4.293 14 C -0.049 4.049 15 C -0.199 4.199 16 C 0.101 3.899 17 C -0.473 4.473 18 H 0.082 0.918 19 C 0.040 3.960 20 N -0.794 5.794 21 Si 0.984 3.016 22 H -0.260 1.260 23 H -0.259 1.259 24 H -0.265 1.265 25 C -0.256 4.256 26 C -0.033 4.033 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.256 0.744 33 H 0.127 0.873 34 H 0.141 0.859 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.415 0.585 38 H 0.133 0.867 39 H 0.116 0.884 40 H 0.298 0.702 41 H 0.100 0.900 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.951 5.943 -7.720 12.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 C -0.085 4.085 4 N -0.181 5.181 5 N -0.184 5.184 6 C -0.125 4.125 7 N -0.158 5.158 8 C -0.021 4.021 9 C -0.011 4.011 10 N -0.372 5.372 11 C 0.370 3.630 12 O -0.490 6.490 13 C -0.298 4.298 14 C -0.068 4.068 15 C -0.218 4.218 16 C 0.098 3.902 17 C -0.500 4.500 18 H 0.100 0.900 19 C -0.179 4.179 20 N -0.418 5.418 21 Si 0.804 3.196 22 H -0.183 1.183 23 H -0.183 1.183 24 H -0.190 1.190 25 C -0.275 4.275 26 C -0.053 4.053 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.272 0.728 33 H 0.145 0.855 34 H 0.159 0.841 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.253 0.747 38 H 0.151 0.849 39 H 0.133 0.867 40 H 0.109 0.891 41 H 0.118 0.882 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.366 6.152 -9.642 13.604 hybrid contribution -0.102 -0.428 2.164 2.208 sum -7.468 5.724 -7.478 12.019 Atomic orbital electron populations 1.21710 0.92196 1.03778 1.02254 1.20213 0.97692 0.84809 1.05460 1.25420 1.01810 0.98577 0.82734 1.74168 1.18352 0.99811 1.25720 1.74157 1.19428 1.13647 1.11176 1.27211 1.00987 0.91415 0.92898 1.46260 1.49017 1.11865 1.08635 1.22219 0.98493 1.04070 0.77270 1.21434 0.97983 0.99291 0.82435 1.45391 1.20294 1.59599 1.11901 1.18353 0.82038 0.75987 0.86642 1.90652 1.31492 1.58698 1.68170 1.19113 0.99279 1.17702 0.93671 1.20753 0.95061 0.96831 0.94112 1.21040 1.00880 1.04216 0.95654 1.18150 0.91440 0.87332 0.93278 1.20130 0.94093 1.39722 0.96045 0.89973 1.26856 0.94499 0.90929 1.05650 1.69742 1.01572 1.30399 1.40073 0.85109 0.79671 0.79242 0.75535 1.18325 1.18300 1.18954 1.20848 1.00895 1.10743 0.95047 1.20505 0.96609 0.94129 0.94032 0.92047 0.92983 0.89478 0.88223 0.88554 0.72784 0.85506 0.84116 0.92412 0.92180 0.74670 0.84902 0.86651 0.89118 0.88183 0.88242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.89 71.98 0.71 -0.94 16 2 C -0.04 -0.62 6.19 29.85 0.18 -0.44 16 3 C 0.18 3.83 7.28 137.98 1.01 4.83 16 4 N -0.34 -9.64 12.21 -50.15 -0.61 -10.25 16 5 N -0.35 -9.44 12.21 -59.99 -0.73 -10.17 16 6 C 0.16 2.96 12.74 180.11 2.29 5.26 16 7 N -0.47 -7.68 2.75 -518.71 -1.42 -9.11 16 8 C 0.10 1.08 5.93 86.38 0.51 1.59 16 9 C 0.11 2.21 6.00 86.38 0.52 2.73 16 10 N -0.72 -17.25 5.50 -466.13 -2.57 -19.82 16 11 C 0.58 21.17 7.76 86.73 0.67 21.84 16 12 O -0.61 -26.71 16.32 -3.98 -0.06 -26.77 16 13 C -0.29 -12.05 5.89 -19.93 -0.12 -12.16 16 14 C -0.05 -1.87 9.47 22.25 0.21 -1.66 16 15 C -0.20 -9.00 8.64 22.47 0.19 -8.81 16 16 C 0.10 4.98 5.58 -21.28 -0.12 4.86 16 17 C -0.47 -22.87 9.04 23.46 0.21 -22.66 16 18 H 0.08 3.87 7.91 -2.91 -0.02 3.84 16 19 C 0.04 1.77 5.14 85.35 0.44 2.20 16 20 N -0.79 -35.68 10.95 21.87 0.24 -35.44 16 21 Si 0.98 33.09 29.60 68.60 2.03 35.12 16 22 H -0.26 -8.75 7.11 99.48 0.71 -8.05 16 23 H -0.26 -8.24 7.11 99.48 0.71 -7.53 16 24 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 25 C -0.26 -12.14 9.73 22.47 0.22 -11.92 16 26 C -0.03 -1.52 9.52 22.25 0.21 -1.31 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.10 1.21 7.62 -2.39 -0.02 1.19 16 32 H 0.26 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.13 0.88 8.02 -2.39 -0.02 0.86 16 34 H 0.14 0.68 8.14 -2.39 -0.02 0.67 16 35 H 0.06 1.31 7.82 -2.38 -0.02 1.30 16 36 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.41 7.44 6.47 -92.71 -0.60 6.84 16 38 H 0.13 3.75 6.37 -2.91 -0.02 3.73 16 39 H 0.12 5.29 6.16 -2.91 -0.02 5.28 16 40 H 0.30 11.76 8.29 -92.71 -0.77 10.99 16 41 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 42 H 0.10 4.43 7.63 -2.91 -0.02 4.41 16 Total: -1.00 -70.29 360.95 4.47 -65.82 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.45 Total: 27.18 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 7.15 Total: -16.56 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -5.10 Total: -84.79 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.06 Total: -26.77 kcal Atomic # 14 Polarization: 33.09 SS G_CDS: 2.03 Total: 35.12 kcal Total: -70.29 4.47 -65.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534798623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.654 kcal (2) G-P(sol) polarization free energy of solvation -70.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds