Wall clock time and date at job start Tue Mar 31 2020 10:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30719 * 126.27730 * 2 1 4 4 N 1.28654 * 110.34112 * 179.97438 * 3 2 1 5 5 C 1.32182 * 109.56499 * 0.02562 * 4 3 2 6 6 C 1.41055 * 133.25331 * 180.28694 * 5 4 3 7 7 C 1.35637 * 119.40074 * 180.15310 * 6 5 4 8 8 C 1.41826 * 119.59673 * 359.50820 * 7 6 5 9 9 C 1.47607 * 119.97615 * 180.25187 * 8 7 6 10 10 O 1.21586 * 119.99601 * 217.48870 * 9 8 7 11 11 N 1.34774 * 120.00106 * 37.49769 * 9 8 7 12 12 C 1.46924 * 120.63095 * 5.45692 * 11 9 8 13 13 C 1.53625 * 108.54432 * 126.37469 * 12 11 9 14 14 C 1.53032 * 109.24307 * 54.85179 * 13 12 11 15 15 C 1.50707 * 109.45043 * 178.49849 * 14 13 12 16 16 H 1.07998 * 119.99856 * 120.06299 * 15 14 13 17 17 C 1.37874 * 119.99889 * 300.06822 * 15 14 13 18 18 N 1.31513 * 120.00461 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99777 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46798 * 60.00089 * 19 17 15 21 21 H 1.48500 * 109.46936 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47152 * 299.99924 * 19 17 15 23 23 C 1.53036 * 109.54102 * 298.51555 * 14 13 12 24 24 C 1.46928 * 120.63188 * 185.74102 * 11 9 8 25 25 C 1.36492 * 120.03897 * 0.27128 * 8 7 6 26 26 N 1.35837 * 120.38271 * 359.97438 * 25 8 7 27 27 H 1.08994 * 109.46752 * 89.97035 * 1 2 3 28 28 H 1.08995 * 109.47405 * 209.97447 * 1 2 3 29 29 H 1.09004 * 109.46391 * 329.97411 * 1 2 3 30 30 H 1.07993 * 120.29704 * 359.97438 * 6 5 4 31 31 H 1.08002 * 120.20384 * 179.75943 * 7 6 5 32 32 H 1.09004 * 109.58609 * 246.20300 * 12 11 9 33 33 H 1.08999 * 109.58733 * 6.62907 * 12 11 9 34 34 H 1.09013 * 109.62856 * 294.86361 * 13 12 11 35 35 H 1.09003 * 109.43597 * 174.72878 * 13 12 11 36 36 H 1.09002 * 109.46225 * 58.53766 * 14 13 12 37 37 H 0.97000 * 120.00490 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.49830 * 301.41120 * 23 14 13 39 39 H 1.09000 * 109.52460 * 181.33116 * 23 14 13 40 40 H 1.09002 * 109.58443 * 353.36761 * 24 11 9 41 41 H 1.08996 * 109.58758 * 113.64833 * 24 11 9 42 42 H 1.08003 * 119.80396 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2805 1.0538 0.0000 4 7 3.5176 0.7006 0.0005 5 6 3.6013 -0.6186 0.0004 6 6 4.6877 -1.5182 0.0059 7 6 4.4470 -2.8530 0.0008 8 6 3.1091 -3.3235 0.0005 9 6 2.8375 -4.7744 0.0006 10 8 1.9045 -5.2182 -0.6404 11 7 3.6236 -5.6071 0.7113 12 6 4.6794 -5.0767 1.5845 13 6 4.4885 -5.6611 2.9924 14 6 4.4547 -7.1885 2.9041 15 6 4.3046 -7.7680 4.2872 16 1 3.4509 -8.3856 4.5241 17 6 5.2570 -7.5095 5.2500 18 7 6.2968 -6.7578 4.9614 19 14 5.0706 -8.2272 6.9645 20 1 5.0389 -9.7095 6.8799 21 1 6.2189 -7.8043 7.8057 22 1 3.8059 -7.7389 7.5707 23 6 3.2716 -7.6251 2.0372 24 6 3.4450 -7.0628 0.6228 25 6 2.0725 -2.4355 -0.0001 26 7 2.3132 -1.0986 -0.0001 27 1 -0.3632 0.0005 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3632 0.8898 0.5143 30 1 5.7020 -1.1474 0.0112 31 1 5.2692 -3.5534 0.0010 32 1 5.6554 -5.3661 1.1950 33 1 4.6078 -3.9898 1.6258 34 1 3.5505 -5.3003 3.4146 35 1 5.3174 -5.3517 3.6290 36 1 5.3829 -7.5472 2.4590 37 1 6.9667 -6.5756 5.6388 38 1 2.3451 -7.2458 2.4684 39 1 3.2338 -8.7136 1.9938 40 1 2.5586 -7.2868 0.0293 41 1 4.3213 -7.5106 0.1542 42 1 1.0551 -2.7979 -0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541977626.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:44 Heat of formation + Delta-G solvation = 74.759707 kcal Electronic energy + Delta-G solvation = -25993.693101 eV Core-core repulsion = 22361.505002 eV Total energy + Delta-G solvation = -3632.188099 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.78608 -40.34713 -38.01589 -36.97694 -34.73941 -33.68494 -32.39989 -31.29186 -30.83226 -30.16370 -27.71124 -26.58306 -25.01695 -23.96718 -22.94001 -22.38689 -21.82353 -20.42405 -18.96250 -18.41224 -17.47761 -16.95233 -16.67430 -16.22031 -16.02809 -15.22455 -14.93514 -14.64480 -14.61674 -14.20965 -13.57351 -13.42376 -13.17542 -13.01622 -12.96157 -12.79951 -12.66270 -12.44049 -12.24245 -11.96484 -11.76546 -11.49399 -11.11127 -10.98970 -10.76373 -10.75968 -10.53431 -10.25476 -10.01147 -9.79865 -9.60073 -9.30953 -9.06812 -8.49644 -8.31340 -8.21624 -6.12642 -4.18937 0.24514 0.68262 1.91156 2.27568 2.73694 3.05320 3.23809 3.28534 3.29375 3.32067 3.77907 4.10419 4.19191 4.33357 4.36984 4.41972 4.48287 4.98282 5.01838 5.09004 5.16946 5.34649 5.39618 5.48817 5.57349 5.65187 5.72286 5.75992 5.78130 5.85896 5.97421 6.01541 6.09954 6.25758 6.48340 6.52963 6.70250 6.87398 6.96228 7.11892 7.52381 7.62530 7.78837 7.91552 8.15892 8.29089 8.29973 8.84041 9.46895 10.92928 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.017530 B = 0.003399 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.908446 B = 8235.679206 C = 8817.252492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.146 3.854 3 N -0.250 5.250 4 N -0.290 5.290 5 C 0.202 3.798 6 C -0.084 4.084 7 C -0.065 4.065 8 C -0.136 4.136 9 C 0.564 3.436 10 O -0.548 6.548 11 N -0.586 5.586 12 C 0.090 3.910 13 C -0.124 4.124 14 C 0.049 3.951 15 C -0.515 4.515 16 H 0.055 0.945 17 C 0.063 3.937 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 C -0.124 4.124 24 C 0.112 3.888 25 C 0.126 3.874 26 N -0.393 5.393 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.164 0.836 31 H 0.160 0.840 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.107 0.893 36 H 0.029 0.971 37 H 0.262 0.738 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.892 8.157 -10.235 14.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.116 4.116 3 N -0.090 5.090 4 N -0.134 5.134 5 C -0.047 4.047 6 C -0.106 4.106 7 C -0.089 4.089 8 C -0.143 4.143 9 C 0.350 3.650 10 O -0.427 6.427 11 N -0.317 5.317 12 C -0.032 4.032 13 C -0.162 4.162 14 C 0.030 3.970 15 C -0.553 4.553 16 H 0.073 0.927 17 C -0.138 4.138 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.203 1.203 23 C -0.162 4.162 24 C -0.010 4.010 25 C 0.001 3.999 26 N -0.074 5.074 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.118 0.882 30 H 0.182 0.818 31 H 0.177 0.823 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.125 0.875 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -5.855 9.632 -10.463 15.379 hybrid contribution -0.280 -1.689 1.131 2.052 sum -6.135 7.943 -9.332 13.704 Atomic orbital electron populations 1.20252 0.82873 1.04948 1.04314 1.24993 0.97046 0.80673 1.08936 1.74169 0.96633 1.23384 1.14800 1.74904 1.10786 1.06046 1.21706 1.22468 0.84908 0.92714 1.04628 1.20192 0.97419 0.90507 1.02445 1.21480 0.96137 0.95688 0.95588 1.19582 0.93313 0.94616 1.06762 1.17672 0.82531 0.84675 0.80135 1.90781 1.29947 1.77356 1.44651 1.48137 1.33780 1.07254 1.42484 1.22610 0.89348 0.98127 0.93103 1.22128 1.02776 0.99197 0.92101 1.18639 0.92655 0.91378 0.94304 1.21148 1.07644 1.30732 0.95770 0.92712 1.24945 0.95118 0.95061 0.98710 1.69799 1.11211 1.37757 1.34259 0.86673 0.77586 0.79607 0.84249 1.20260 1.21248 1.20332 1.22017 1.01225 0.99758 0.93181 1.21809 1.01793 0.77862 0.99518 1.21552 1.01571 0.79374 0.97432 1.43634 1.09141 1.06720 1.47867 0.89357 0.90107 0.88241 0.81815 0.82251 0.91199 0.90593 0.94179 0.87524 0.95310 0.92816 0.92839 0.91842 0.90019 0.91609 0.80347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.40 36.01 0.37 -0.09 16 2 C 0.15 1.76 8.14 -154.11 -1.25 0.51 16 3 N -0.25 -3.73 12.18 32.97 0.40 -3.33 16 4 N -0.29 -4.53 12.29 31.19 0.38 -4.15 16 5 C 0.20 2.76 7.92 -155.95 -1.23 1.53 16 6 C -0.08 -0.93 10.09 -39.44 -0.40 -1.32 16 7 C -0.06 -0.70 7.35 -39.14 -0.29 -0.99 16 8 C -0.14 -1.71 5.18 -105.33 -0.55 -2.26 16 9 C 0.56 8.53 7.34 -12.44 -0.09 8.44 16 10 O -0.55 -9.58 16.23 5.29 0.09 -9.49 16 11 N -0.59 -9.11 2.97 -173.70 -0.52 -9.63 16 12 C 0.09 1.38 4.84 -3.49 -0.02 1.37 16 13 C -0.12 -2.50 5.17 -26.39 -0.14 -2.64 16 14 C 0.05 1.07 2.06 -91.73 -0.19 0.88 16 15 C -0.51 -13.03 8.56 -34.44 -0.29 -13.33 16 16 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 18 N -0.89 -23.35 11.31 55.43 0.63 -22.72 16 19 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 23 C -0.12 -2.30 5.30 -26.62 -0.14 -2.44 16 24 C 0.11 1.79 6.44 -3.71 -0.02 1.76 16 25 C 0.13 1.47 10.44 -16.41 -0.17 1.30 16 26 N -0.39 -4.95 2.94 -59.37 -0.17 -5.12 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.16 1.49 6.29 -52.49 -0.33 1.16 16 32 H 0.07 1.02 8.07 -51.93 -0.42 0.60 16 33 H 0.08 1.03 4.54 -51.93 -0.24 0.79 16 34 H 0.04 0.84 8.14 -51.92 -0.42 0.42 16 35 H 0.11 2.44 6.03 -51.93 -0.31 2.13 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.08 1.29 7.00 -51.93 -0.36 0.93 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.18 1.75 7.98 -52.48 -0.42 1.33 16 LS Contribution 342.47 15.07 5.16 5.16 Total: -1.00 -30.67 342.47 -8.98 -39.65 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.43 Total: 0.25 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -4.50 Total: -5.76 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.72 Total: -44.95 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.67 -8.98 -39.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541977626.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.409 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds