Wall clock time and date at job start Tue Mar 31 2020 10:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30719 * 126.27730 * 2 1 4 4 N 1.28654 * 110.34112 * 179.97438 * 3 2 1 5 5 C 1.32182 * 109.56499 * 0.02562 * 4 3 2 6 6 C 1.41055 * 133.25331 * 180.28694 * 5 4 3 7 7 C 1.35637 * 119.40074 * 180.15310 * 6 5 4 8 8 C 1.41826 * 119.59673 * 359.50820 * 7 6 5 9 9 C 1.47607 * 119.97615 * 180.25187 * 8 7 6 10 10 O 1.21586 * 119.99601 * 217.48870 * 9 8 7 11 11 N 1.34774 * 120.00106 * 37.49769 * 9 8 7 12 12 C 1.46924 * 120.63095 * 5.45692 * 11 9 8 13 13 C 1.53625 * 108.54432 * 126.37469 * 12 11 9 14 14 C 1.53032 * 109.24307 * 54.85179 * 13 12 11 15 15 C 1.50707 * 109.45043 * 178.49849 * 14 13 12 16 16 H 1.07998 * 119.99856 * 120.06299 * 15 14 13 17 17 C 1.37874 * 119.99889 * 300.06822 * 15 14 13 18 18 N 1.31513 * 120.00461 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99777 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46798 * 60.00089 * 19 17 15 21 21 H 1.48500 * 109.46936 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47152 * 299.99924 * 19 17 15 23 23 C 1.53036 * 109.54102 * 298.51555 * 14 13 12 24 24 C 1.46928 * 120.63188 * 185.74102 * 11 9 8 25 25 C 1.36492 * 120.03897 * 0.27128 * 8 7 6 26 26 N 1.35837 * 120.38271 * 359.97438 * 25 8 7 27 27 H 1.08994 * 109.46752 * 89.97035 * 1 2 3 28 28 H 1.08995 * 109.47405 * 209.97447 * 1 2 3 29 29 H 1.09004 * 109.46391 * 329.97411 * 1 2 3 30 30 H 1.07993 * 120.29704 * 359.97438 * 6 5 4 31 31 H 1.08002 * 120.20384 * 179.75943 * 7 6 5 32 32 H 1.09004 * 109.58609 * 246.20300 * 12 11 9 33 33 H 1.08999 * 109.58733 * 6.62907 * 12 11 9 34 34 H 1.09013 * 109.62856 * 294.86361 * 13 12 11 35 35 H 1.09003 * 109.43597 * 174.72878 * 13 12 11 36 36 H 1.09002 * 109.46225 * 58.53766 * 14 13 12 37 37 H 0.97000 * 120.00490 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.49830 * 301.41120 * 23 14 13 39 39 H 1.09000 * 109.52460 * 181.33116 * 23 14 13 40 40 H 1.09002 * 109.58443 * 353.36761 * 24 11 9 41 41 H 1.08996 * 109.58758 * 113.64833 * 24 11 9 42 42 H 1.08003 * 119.80396 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2805 1.0538 0.0000 4 7 3.5176 0.7006 0.0005 5 6 3.6013 -0.6186 0.0004 6 6 4.6877 -1.5182 0.0059 7 6 4.4470 -2.8530 0.0008 8 6 3.1091 -3.3235 0.0005 9 6 2.8375 -4.7744 0.0006 10 8 1.9045 -5.2182 -0.6404 11 7 3.6236 -5.6071 0.7113 12 6 4.6794 -5.0767 1.5845 13 6 4.4885 -5.6611 2.9924 14 6 4.4547 -7.1885 2.9041 15 6 4.3046 -7.7680 4.2872 16 1 3.4509 -8.3856 4.5241 17 6 5.2570 -7.5095 5.2500 18 7 6.2968 -6.7578 4.9614 19 14 5.0706 -8.2272 6.9645 20 1 5.0389 -9.7095 6.8799 21 1 6.2189 -7.8043 7.8057 22 1 3.8059 -7.7389 7.5707 23 6 3.2716 -7.6251 2.0372 24 6 3.4450 -7.0628 0.6228 25 6 2.0725 -2.4355 -0.0001 26 7 2.3132 -1.0986 -0.0001 27 1 -0.3632 0.0005 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3632 0.8898 0.5143 30 1 5.7020 -1.1474 0.0112 31 1 5.2692 -3.5534 0.0010 32 1 5.6554 -5.3661 1.1950 33 1 4.6078 -3.9898 1.6258 34 1 3.5505 -5.3003 3.4146 35 1 5.3174 -5.3517 3.6290 36 1 5.3829 -7.5472 2.4590 37 1 6.9667 -6.5756 5.6388 38 1 2.3451 -7.2458 2.4684 39 1 3.2338 -8.7136 1.9938 40 1 2.5586 -7.2868 0.0293 41 1 4.3213 -7.5106 0.1542 42 1 1.0551 -2.7979 -0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541977626.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:44 Heat of formation + Delta-G solvation = 58.974503 kcal Electronic energy + Delta-G solvation = -25994.377599 eV Core-core repulsion = 22361.505002 eV Total energy + Delta-G solvation = -3632.872597 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.74821 -41.54057 -39.10442 -38.34216 -35.76299 -35.23580 -33.58461 -32.60026 -31.87749 -31.53173 -28.56991 -28.14187 -26.21310 -25.11677 -24.27709 -23.77246 -22.74133 -21.78474 -20.27663 -19.53113 -18.50336 -18.31120 -17.90608 -17.53403 -17.24390 -16.49544 -16.24576 -16.00210 -15.64518 -15.20001 -14.86655 -14.61656 -14.48784 -14.21928 -14.07029 -13.95796 -13.59877 -13.53607 -13.28613 -13.25426 -13.08105 -12.82773 -12.72955 -12.48959 -12.15446 -12.12593 -11.90962 -11.73438 -11.48237 -11.21977 -10.99428 -10.85412 -10.59548 -10.37359 -9.62850 -9.21588 -8.07251 -6.19262 -0.67775 -0.24242 0.97045 1.27834 1.42625 1.44553 1.50519 1.66608 1.92852 2.25411 2.44745 2.87901 3.15993 3.20124 3.32759 3.43015 3.55404 3.63902 4.00922 4.15285 4.28960 4.31366 4.37301 4.46025 4.59593 4.59843 4.66237 4.71537 4.73328 4.83218 4.86821 4.88900 4.98019 4.99068 5.16918 5.20848 5.24431 5.43278 5.51935 5.64336 5.65319 6.01473 6.14621 6.34910 6.41786 6.90138 6.94535 7.30970 7.48457 8.95594 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.017530 B = 0.003399 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.908446 B = 8235.679206 C = 8817.252492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.155 3.845 3 N -0.287 5.287 4 N -0.326 5.326 5 C 0.190 3.810 6 C -0.083 4.083 7 C -0.059 4.059 8 C -0.149 4.149 9 C 0.570 3.430 10 O -0.571 6.571 11 N -0.589 5.589 12 C 0.103 3.897 13 C -0.116 4.116 14 C 0.045 3.955 15 C -0.536 4.536 16 H 0.046 0.954 17 C 0.021 3.979 18 N -0.909 5.909 19 Si 0.942 3.058 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.277 1.277 23 C -0.115 4.115 24 C 0.118 3.882 25 C 0.135 3.865 26 N -0.399 5.399 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.189 0.811 31 H 0.179 0.821 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.023 0.977 35 H 0.080 0.920 36 H 0.010 0.990 37 H 0.261 0.739 38 H 0.041 0.959 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.479 8.222 -10.934 15.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.108 4.108 3 N -0.125 5.125 4 N -0.170 5.170 5 C -0.060 4.060 6 C -0.104 4.104 7 C -0.083 4.083 8 C -0.156 4.156 9 C 0.358 3.642 10 O -0.452 6.452 11 N -0.319 5.319 12 C -0.018 4.018 13 C -0.155 4.155 14 C 0.027 3.973 15 C -0.574 4.574 16 H 0.064 0.936 17 C -0.178 4.178 18 N -0.548 5.548 19 Si 0.769 3.231 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.203 1.203 23 C -0.153 4.153 24 C -0.004 4.004 25 C 0.010 3.990 26 N -0.080 5.080 27 H 0.125 0.875 28 H 0.118 0.882 29 H 0.128 0.872 30 H 0.206 0.794 31 H 0.196 0.804 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.042 0.958 35 H 0.098 0.902 36 H 0.028 0.972 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -6.441 9.720 -11.165 16.144 hybrid contribution -0.172 -1.728 1.351 2.200 sum -6.614 7.992 -9.813 14.280 Atomic orbital electron populations 1.20542 0.79591 1.06395 1.05956 1.25878 0.98642 0.79882 1.06373 1.74096 0.96888 1.24853 1.16713 1.74804 1.11516 1.07318 1.23374 1.22889 0.86072 0.92614 1.04401 1.20485 0.97924 0.90098 1.01897 1.21624 0.95872 0.95908 0.94929 1.19437 0.94461 0.93225 1.08435 1.17863 0.81626 0.85411 0.79268 1.90771 1.30833 1.78015 1.45564 1.48108 1.33983 1.07152 1.42666 1.22466 0.90027 0.99193 0.90158 1.21885 1.00730 0.98095 0.94787 1.18615 0.93017 0.92494 0.93186 1.21538 1.07339 1.30826 0.97704 0.93597 1.25554 0.95119 0.95556 1.01586 1.69905 1.11567 1.38409 1.34935 0.85861 0.77398 0.78982 0.80868 1.20002 1.20994 1.20286 1.21859 0.99051 1.00055 0.94323 1.21709 1.02814 0.78299 0.97563 1.21801 1.02352 0.78900 0.95912 1.43773 1.09013 1.07065 1.48105 0.87462 0.88228 0.87185 0.79426 0.80406 0.89683 0.88240 0.95765 0.90194 0.97230 0.92957 0.94037 0.91589 0.89466 0.90056 0.78456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.40 71.24 0.74 -0.04 16 2 C 0.16 3.52 8.14 137.67 1.12 4.64 16 3 N -0.29 -8.44 12.18 -49.61 -0.60 -9.04 16 4 N -0.33 -10.12 12.29 -55.23 -0.68 -10.79 16 5 C 0.19 4.97 7.92 134.12 1.06 6.03 16 6 C -0.08 -1.65 10.09 22.36 0.23 -1.42 16 7 C -0.06 -1.13 7.35 22.55 0.17 -0.96 16 8 C -0.15 -3.39 5.18 -20.33 -0.11 -3.50 16 9 C 0.57 15.96 7.34 86.72 0.64 16.60 16 10 O -0.57 -18.75 16.23 -3.99 -0.06 -18.81 16 11 N -0.59 -17.10 2.97 -821.74 -2.44 -19.54 16 12 C 0.10 2.99 4.84 86.51 0.42 3.40 16 13 C -0.12 -4.68 5.17 30.82 0.16 -4.52 16 14 C 0.05 2.00 2.06 -11.51 -0.02 1.98 16 15 C -0.54 -27.43 8.56 25.60 0.22 -27.21 16 16 H 0.05 2.36 7.74 -2.91 -0.02 2.34 16 17 C 0.02 1.09 5.30 84.65 0.45 1.54 16 18 N -0.91 -47.92 11.31 21.45 0.24 -47.68 16 19 Si 0.94 41.42 29.54 68.60 2.03 43.45 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 23 C -0.11 -4.21 5.30 30.67 0.16 -4.04 16 24 C 0.12 3.57 6.44 86.36 0.56 4.12 16 25 C 0.14 2.85 10.44 83.66 0.87 3.73 16 26 N -0.40 -9.34 2.94 -341.73 -1.00 -10.34 16 27 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.19 2.68 8.06 -2.91 -0.02 2.66 16 31 H 0.18 2.72 6.29 -2.91 -0.02 2.70 16 32 H 0.09 2.26 8.07 -2.38 -0.02 2.24 16 33 H 0.10 2.44 4.54 -2.39 -0.01 2.43 16 34 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.08 3.68 6.03 -2.39 -0.01 3.67 16 36 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.09 2.59 7.00 -2.39 -0.02 2.57 16 41 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.20 3.30 7.98 -2.91 -0.02 3.28 16 Total: -1.00 -67.02 342.47 5.19 -61.83 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 1.05 Total: 10.60 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 6.66 Total: 0.33 kcal Atomic # 7 Polarization: -92.91 SS G_CDS: -4.48 Total: -97.39 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.06 Total: -18.81 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -67.02 5.19 -61.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541977626.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.805 kcal (2) G-P(sol) polarization free energy of solvation -67.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds