Wall clock time and date at job start Tue Mar 31 2020 11:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46964 * 2 1 4 4 C 1.52998 * 109.47098 * 240.00202 * 2 1 3 5 5 C 1.50701 * 109.47077 * 120.00038 * 2 1 3 6 6 N 1.30437 * 125.98857 * 359.41710 * 5 2 1 7 7 N 1.39935 * 108.90284 * 180.02562 * 6 5 2 8 8 H 0.96999 * 125.75597 * 179.97438 * 7 6 5 9 9 C 1.34267 * 108.49606 * 0.23210 * 7 6 5 10 10 C 1.38070 * 107.40831 * 359.63826 * 9 7 6 11 11 C 1.47395 * 126.41401 * 180.13974 * 10 9 7 12 12 O 1.21603 * 119.99999 * 182.37646 * 11 10 9 13 13 N 1.34775 * 119.99841 * 2.36892 * 11 10 9 14 14 C 1.39398 * 119.99833 * 184.74978 * 13 11 10 15 15 C 1.38624 * 119.58175 * 174.63824 * 14 13 11 16 16 C 1.40805 * 118.79168 * 179.73858 * 15 14 13 17 17 C 1.41545 * 120.99647 * 180.25643 * 16 15 14 18 18 H 1.07998 * 120.00128 * 209.99819 * 17 16 15 19 19 C 1.40036 * 119.99670 * 30.00267 * 17 16 15 20 20 N 1.30744 * 119.99989 * 7.86475 * 19 17 16 21 21 Si 1.86796 * 119.99764 * 187.87417 * 19 17 16 22 22 H 1.48504 * 109.47071 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47736 * 119.99738 * 21 19 17 24 24 H 1.48503 * 109.46658 * 239.99450 * 21 19 17 25 25 C 1.41179 * 118.00844 * 0.51751 * 16 15 14 26 26 C 1.37590 * 119.02055 * 359.73918 * 25 16 15 27 27 N 1.32086 * 121.10984 * 359.97438 * 26 25 16 28 28 H 1.09002 * 109.47291 * 299.99876 * 1 2 3 29 29 H 1.08997 * 109.47394 * 59.99832 * 1 2 3 30 30 H 1.09002 * 109.47114 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46695 * 185.07804 * 3 2 1 32 32 H 1.08997 * 109.46774 * 305.07787 * 3 2 1 33 33 H 1.09000 * 109.47203 * 65.07916 * 3 2 1 34 34 H 1.09003 * 109.47022 * 308.74990 * 4 2 1 35 35 H 1.08999 * 109.47214 * 68.75074 * 4 2 1 36 36 H 1.08999 * 109.47119 * 188.75590 * 4 2 1 37 37 H 1.07996 * 126.29113 * 179.77359 * 9 7 6 38 38 H 0.96998 * 120.00763 * 4.75791 * 13 11 10 39 39 H 1.07993 * 120.60186 * 359.97438 * 15 14 13 40 40 H 0.97003 * 119.99735 * 180.02562 * 20 19 17 41 41 H 1.08003 * 120.49128 * 179.75670 * 25 16 15 42 42 H 1.07999 * 119.44317 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 7 1.2928 -1.2383 2.1663 7 7 2.1263 -1.8035 3.1380 8 1 1.8316 -2.2600 3.9415 9 6 3.4028 -1.6024 2.7734 10 6 3.3870 -0.9207 1.5729 11 6 4.5631 -0.4887 0.7965 12 8 4.4143 0.1456 -0.2303 13 7 5.8033 -0.7965 1.2248 14 6 6.9171 -0.3046 0.5460 15 6 8.1856 -0.5329 1.0565 16 6 9.2992 -0.0333 0.3544 17 6 10.6154 -0.2439 0.8305 18 1 11.3878 0.4815 0.6214 19 6 10.9162 -1.3928 1.5725 20 7 10.0265 -2.3429 1.6956 21 14 12.5883 -1.5676 2.3866 22 1 13.4079 -0.3635 2.0974 23 1 12.4122 -1.7062 3.8545 24 1 13.2742 -2.7725 1.8544 25 6 9.0633 0.6887 -0.8357 26 6 7.7673 0.8691 -1.2611 27 7 6.7497 0.3792 -0.5763 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1262 1.4438 -0.0910 32 1 1.6042 1.9819 -0.8410 33 1 1.7528 1.9294 0.9320 34 1 1.5546 -1.6938 -1.3309 35 1 1.8099 -0.1251 -2.1323 36 1 3.1187 -0.8587 -1.1745 37 1 4.2803 -1.9180 3.3180 38 1 5.9211 -1.3603 2.0052 39 1 8.3174 -1.0870 1.9740 40 1 10.2347 -3.1386 2.2099 41 1 9.8879 1.0931 -1.4039 42 1 7.5791 1.4200 -2.1708 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000551665300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:39 Heat of formation + Delta-G solvation = 72.136368 kcal Electronic energy + Delta-G solvation = -25947.990151 eV Core-core repulsion = 22315.688296 eV Total energy + Delta-G solvation = -3632.301855 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.52166 -39.28248 -37.69692 -36.54040 -34.25328 -33.68497 -31.00070 -30.74252 -30.37343 -28.33527 -26.92637 -26.86741 -25.98163 -23.39851 -22.65428 -21.94769 -21.15800 -19.60286 -18.48197 -18.10605 -17.54127 -16.33806 -15.62310 -15.21516 -15.11773 -14.87678 -14.46549 -14.21620 -14.10632 -14.05034 -13.73653 -13.44370 -12.92649 -12.63077 -12.56031 -12.43868 -11.94426 -11.84933 -11.47828 -11.24563 -11.23292 -11.12437 -10.96812 -10.90659 -10.78397 -10.39866 -10.23311 -10.08984 -9.61980 -9.50804 -9.36891 -9.18141 -8.72415 -7.94626 -7.72063 -7.02525 -6.75178 -4.63398 1.52521 2.22416 2.65698 2.74837 2.80139 3.01329 3.06621 3.23015 3.71762 3.85524 3.93013 4.41692 4.62444 4.70398 4.99269 5.21981 5.23792 5.39145 5.54440 5.56544 5.66455 5.83443 5.92723 6.03634 6.09350 6.12061 6.20163 6.29537 6.33066 6.55206 6.56194 6.63636 6.79352 6.82627 6.87220 6.98248 7.05646 7.11546 7.38201 7.48335 7.53558 7.81051 7.96112 8.22571 8.43874 8.70336 8.75822 8.96286 9.66889 10.11290 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.021408 B = 0.003443 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.578052 B = 8129.461338 C = 9179.658299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.020 3.980 3 C -0.155 4.155 4 C -0.148 4.148 5 C 0.148 3.852 6 N -0.300 5.300 7 N -0.467 5.467 8 H 0.441 0.559 9 C 0.097 3.903 10 C -0.276 4.276 11 C 0.573 3.427 12 O -0.465 6.465 13 N -0.655 5.655 14 C 0.338 3.662 15 C -0.235 4.235 16 C 0.144 3.856 17 C -0.458 4.458 18 H 0.081 0.919 19 C 0.076 3.924 20 N -0.800 5.800 21 Si 0.913 3.087 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.274 1.274 25 C -0.280 4.280 26 C 0.117 3.883 27 N -0.546 5.546 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.105 0.895 32 H 0.055 0.945 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.185 0.815 38 H 0.403 0.597 39 H 0.128 0.872 40 H 0.279 0.721 41 H 0.102 0.898 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.948 -1.081 4.420 12.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.017 3.983 3 C -0.213 4.213 4 C -0.206 4.206 5 C -0.020 4.020 6 N -0.122 5.122 7 N -0.171 5.171 8 H 0.285 0.715 9 C -0.055 4.055 10 C -0.291 4.291 11 C 0.359 3.641 12 O -0.338 6.338 13 N -0.299 5.299 14 C 0.113 3.887 15 C -0.261 4.261 16 C 0.136 3.864 17 C -0.490 4.490 18 H 0.099 0.901 19 C -0.142 4.142 20 N -0.426 5.426 21 Si 0.738 3.262 22 H -0.184 1.184 23 H -0.198 1.198 24 H -0.199 1.199 25 C -0.303 4.303 26 C -0.037 4.037 27 N -0.265 5.265 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.202 0.798 38 H 0.238 0.762 39 H 0.146 0.854 40 H 0.090 0.910 41 H 0.120 0.880 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.215 -0.932 3.891 14.768 hybrid contribution 2.424 -0.986 1.563 3.048 sum -11.792 -1.919 5.454 13.133 Atomic orbital electron populations 1.21829 0.94147 1.01815 1.01522 1.18978 0.94750 0.95258 0.89275 1.22212 1.06148 0.92564 1.00374 1.22086 1.04809 0.98514 0.95141 1.22440 0.89987 0.94624 0.94949 1.77120 1.16827 1.17831 1.00384 1.46081 1.04056 1.45766 1.21211 0.71474 1.23200 0.89310 0.97014 0.95994 1.20501 0.94802 1.14472 0.99362 1.17305 0.81514 0.80343 0.84918 1.90650 1.84154 1.36684 1.22286 1.43271 1.04418 1.51040 1.31209 1.18169 0.84732 0.94730 0.91082 1.21592 0.89522 1.11196 1.03741 1.17581 0.93072 0.87194 0.88550 1.19588 0.95093 1.05187 1.29153 0.90089 1.25908 0.99092 0.94955 0.94200 1.69751 1.35101 1.05941 1.31854 0.86173 0.81616 0.79267 0.79145 1.18402 1.19791 1.19935 1.21976 0.96667 1.11675 1.00021 1.21783 0.88340 0.96441 0.97185 1.67232 1.34526 1.16606 1.08122 0.92682 0.92424 0.92693 0.87657 0.92608 0.94038 0.94007 0.92272 0.88778 0.79798 0.76205 0.85448 0.90989 0.87988 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 7.95 37.16 0.30 -1.35 16 2 C 0.02 0.28 0.75 -155.66 -0.12 0.16 16 3 C -0.16 -2.31 8.24 37.16 0.31 -2.00 16 4 C -0.15 -2.20 8.19 37.16 0.30 -1.89 16 5 C 0.15 2.21 5.64 -82.02 -0.46 1.75 16 6 N -0.30 -4.09 11.93 33.90 0.40 -3.68 16 7 N -0.47 -4.75 7.29 30.85 0.22 -4.53 16 8 H 0.44 2.74 8.96 -182.72 -1.64 1.10 16 9 C 0.10 1.06 11.52 -16.55 -0.19 0.87 16 10 C -0.28 -4.13 5.93 -105.07 -0.62 -4.76 16 11 C 0.57 10.49 7.34 -12.53 -0.09 10.40 16 12 O -0.47 -9.67 8.42 5.27 0.04 -9.62 16 13 N -0.65 -12.23 5.37 -12.48 -0.07 -12.29 16 14 C 0.34 7.83 7.41 -154.76 -1.15 6.68 16 15 C -0.24 -5.74 8.58 -38.47 -0.33 -6.07 16 16 C 0.14 3.69 5.57 -106.55 -0.59 3.10 16 17 C -0.46 -11.56 9.12 -37.65 -0.34 -11.90 16 18 H 0.08 1.97 7.86 -52.49 -0.41 1.56 16 19 C 0.08 1.79 5.32 -17.34 -0.09 1.70 16 20 N -0.80 -19.28 10.85 55.55 0.60 -18.67 16 21 Si 0.91 17.71 29.57 -169.99 -5.03 12.68 16 22 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 23 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 24 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 25 C -0.28 -6.68 9.90 -38.70 -0.38 -7.06 16 26 C 0.12 2.70 11.15 -17.68 -0.20 2.51 16 27 N -0.55 -13.24 7.84 -12.53 -0.10 -13.34 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.11 1.88 4.62 -51.93 -0.24 1.64 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.04 0.57 8.13 -51.93 -0.42 0.15 16 35 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 36 H 0.09 1.68 4.68 -51.93 -0.24 1.44 16 37 H 0.19 1.31 7.48 -52.49 -0.39 0.92 16 38 H 0.40 6.11 7.65 -40.82 -0.31 5.79 16 39 H 0.13 3.09 6.33 -52.49 -0.33 2.76 16 40 H 0.28 6.09 8.29 -40.82 -0.34 5.75 16 41 H 0.10 2.24 8.06 -52.48 -0.42 1.82 16 42 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 344.15 15.07 5.19 5.19 Total: -1.00 -30.97 344.15 -8.90 -39.87 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -6.51 Total: 12.26 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -3.67 Total: -7.87 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 1.07 Total: -52.51 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.04 Total: -9.62 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.97 -8.90 -39.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000551665300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.010 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds