Wall clock time and date at job start Tue Mar 31 2020 11:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46964 * 2 1 4 4 C 1.52998 * 109.47098 * 240.00202 * 2 1 3 5 5 C 1.50701 * 109.47077 * 120.00038 * 2 1 3 6 6 N 1.30437 * 125.98857 * 359.41710 * 5 2 1 7 7 N 1.39935 * 108.90284 * 180.02562 * 6 5 2 8 8 H 0.96999 * 125.75597 * 179.97438 * 7 6 5 9 9 C 1.34267 * 108.49606 * 0.23210 * 7 6 5 10 10 C 1.38070 * 107.40831 * 359.63826 * 9 7 6 11 11 C 1.47395 * 126.41401 * 180.13974 * 10 9 7 12 12 O 1.21603 * 119.99999 * 182.37646 * 11 10 9 13 13 N 1.34775 * 119.99841 * 2.36892 * 11 10 9 14 14 C 1.39398 * 119.99833 * 184.74978 * 13 11 10 15 15 C 1.38624 * 119.58175 * 174.63824 * 14 13 11 16 16 C 1.40805 * 118.79168 * 179.73858 * 15 14 13 17 17 C 1.41545 * 120.99647 * 180.25643 * 16 15 14 18 18 H 1.07998 * 120.00128 * 209.99819 * 17 16 15 19 19 C 1.40036 * 119.99670 * 30.00267 * 17 16 15 20 20 N 1.30744 * 119.99989 * 7.86475 * 19 17 16 21 21 Si 1.86796 * 119.99764 * 187.87417 * 19 17 16 22 22 H 1.48504 * 109.47071 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47736 * 119.99738 * 21 19 17 24 24 H 1.48503 * 109.46658 * 239.99450 * 21 19 17 25 25 C 1.41179 * 118.00844 * 0.51751 * 16 15 14 26 26 C 1.37590 * 119.02055 * 359.73918 * 25 16 15 27 27 N 1.32086 * 121.10984 * 359.97438 * 26 25 16 28 28 H 1.09002 * 109.47291 * 299.99876 * 1 2 3 29 29 H 1.08997 * 109.47394 * 59.99832 * 1 2 3 30 30 H 1.09002 * 109.47114 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46695 * 185.07804 * 3 2 1 32 32 H 1.08997 * 109.46774 * 305.07787 * 3 2 1 33 33 H 1.09000 * 109.47203 * 65.07916 * 3 2 1 34 34 H 1.09003 * 109.47022 * 308.74990 * 4 2 1 35 35 H 1.08999 * 109.47214 * 68.75074 * 4 2 1 36 36 H 1.08999 * 109.47119 * 188.75590 * 4 2 1 37 37 H 1.07996 * 126.29113 * 179.77359 * 9 7 6 38 38 H 0.96998 * 120.00763 * 4.75791 * 13 11 10 39 39 H 1.07993 * 120.60186 * 359.97438 * 15 14 13 40 40 H 0.97003 * 119.99735 * 180.02562 * 20 19 17 41 41 H 1.08003 * 120.49128 * 179.75670 * 25 16 15 42 42 H 1.07999 * 119.44317 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 7 1.2928 -1.2383 2.1663 7 7 2.1263 -1.8035 3.1380 8 1 1.8316 -2.2600 3.9415 9 6 3.4028 -1.6024 2.7734 10 6 3.3870 -0.9207 1.5729 11 6 4.5631 -0.4887 0.7965 12 8 4.4143 0.1456 -0.2303 13 7 5.8033 -0.7965 1.2248 14 6 6.9171 -0.3046 0.5460 15 6 8.1856 -0.5329 1.0565 16 6 9.2992 -0.0333 0.3544 17 6 10.6154 -0.2439 0.8305 18 1 11.3878 0.4815 0.6214 19 6 10.9162 -1.3928 1.5725 20 7 10.0265 -2.3429 1.6956 21 14 12.5883 -1.5676 2.3866 22 1 13.4079 -0.3635 2.0974 23 1 12.4122 -1.7062 3.8545 24 1 13.2742 -2.7725 1.8544 25 6 9.0633 0.6887 -0.8357 26 6 7.7673 0.8691 -1.2611 27 7 6.7497 0.3792 -0.5763 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1262 1.4438 -0.0910 32 1 1.6042 1.9819 -0.8410 33 1 1.7528 1.9294 0.9320 34 1 1.5546 -1.6938 -1.3309 35 1 1.8099 -0.1251 -2.1323 36 1 3.1187 -0.8587 -1.1745 37 1 4.2803 -1.9180 3.3180 38 1 5.9211 -1.3603 2.0052 39 1 8.3174 -1.0870 1.9740 40 1 10.2347 -3.1386 2.2099 41 1 9.8879 1.0931 -1.4039 42 1 7.5791 1.4200 -2.1708 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000551665300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:38 Heat of formation + Delta-G solvation = 53.448640 kcal Electronic energy + Delta-G solvation = -25948.800512 eV Core-core repulsion = 22315.688296 eV Total energy + Delta-G solvation = -3633.112216 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.57404 -40.86103 -39.27969 -37.68291 -35.97704 -35.32008 -32.44756 -32.01176 -31.74032 -29.93291 -28.04831 -27.98386 -27.81567 -24.74135 -23.77543 -23.68384 -22.64026 -21.02855 -19.72915 -19.23596 -19.13449 -17.73130 -17.21948 -16.85168 -16.34124 -16.05970 -15.97786 -15.71107 -15.62454 -15.31650 -15.02445 -14.65214 -14.57437 -14.29589 -14.04443 -13.73921 -13.18205 -12.95986 -12.94758 -12.84840 -12.67605 -12.40181 -12.32677 -12.05310 -12.02415 -11.88128 -11.83452 -11.42840 -11.28772 -11.03734 -10.66491 -10.50688 -9.84213 -9.78579 -9.49541 -8.77161 -8.52251 -6.52885 0.47094 0.89221 1.04988 1.23492 1.43807 1.57474 1.59241 1.80202 2.23729 2.28739 2.54615 2.91254 3.37699 3.69806 3.79775 3.97129 4.07549 4.15484 4.22930 4.41126 4.50066 4.57235 4.81793 4.85049 4.86172 4.91136 4.97475 4.98912 5.04305 5.11459 5.13654 5.17508 5.26067 5.28838 5.48040 5.52842 5.60037 5.61280 5.82595 5.99481 6.23387 6.28117 6.50607 6.60470 6.70770 6.85151 6.90297 7.49509 7.90774 8.35764 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.021408 B = 0.003443 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.578052 B = 8129.461338 C = 9179.658299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.016 3.984 3 C -0.149 4.149 4 C -0.141 4.141 5 C 0.136 3.864 6 N -0.313 5.313 7 N -0.445 5.445 8 H 0.461 0.539 9 C 0.129 3.871 10 C -0.313 4.313 11 C 0.569 3.431 12 O -0.494 6.494 13 N -0.649 5.649 14 C 0.339 3.661 15 C -0.251 4.251 16 C 0.116 3.884 17 C -0.490 4.490 18 H 0.079 0.921 19 C 0.039 3.961 20 N -0.822 5.822 21 Si 0.987 3.013 22 H -0.261 1.261 23 H -0.262 1.262 24 H -0.269 1.269 25 C -0.296 4.296 26 C 0.113 3.887 27 N -0.566 5.566 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.226 0.774 38 H 0.418 0.582 39 H 0.125 0.875 40 H 0.290 0.710 41 H 0.113 0.887 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.509 -2.094 6.135 14.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.014 3.986 3 C -0.206 4.206 4 C -0.199 4.199 5 C -0.032 4.032 6 N -0.135 5.135 7 N -0.151 5.151 8 H 0.310 0.690 9 C -0.025 4.025 10 C -0.328 4.328 11 C 0.358 3.642 12 O -0.368 6.368 13 N -0.295 5.295 14 C 0.112 3.888 15 C -0.277 4.277 16 C 0.108 3.892 17 C -0.521 4.521 18 H 0.097 0.903 19 C -0.177 4.177 20 N -0.448 5.448 21 Si 0.808 3.192 22 H -0.185 1.185 23 H -0.186 1.186 24 H -0.194 1.194 25 C -0.319 4.319 26 C -0.041 4.041 27 N -0.285 5.285 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.243 0.757 38 H 0.256 0.744 39 H 0.143 0.857 40 H 0.100 0.900 41 H 0.131 0.869 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.835 -1.969 5.642 15.993 hybrid contribution 2.517 -0.711 1.055 2.820 sum -12.318 -2.681 6.697 14.274 Atomic orbital electron populations 1.21747 0.92345 1.02088 1.02247 1.18993 0.96109 0.94513 0.88992 1.22091 1.04098 0.93531 1.00916 1.21976 1.02761 0.99185 0.95992 1.22520 0.90130 0.95080 0.95449 1.77073 1.17396 1.18235 1.00776 1.46112 1.03579 1.44360 1.21079 0.69016 1.23690 0.90568 0.93996 0.94237 1.20272 0.93488 1.17725 1.01297 1.17771 0.81897 0.79649 0.84846 1.90651 1.84577 1.37820 1.23718 1.43236 1.03654 1.51177 1.31448 1.18391 0.85807 0.93805 0.90756 1.21562 0.89944 1.12195 1.03953 1.17996 0.93902 0.87949 0.89395 1.19836 0.95140 1.06267 1.30848 0.90252 1.26719 1.02895 0.94015 0.94063 1.69785 1.36886 1.06371 1.31786 0.85079 0.76684 0.79080 0.78378 1.18472 1.18616 1.19369 1.22146 0.97438 1.12238 1.00121 1.22218 0.88043 0.96034 0.97822 1.67372 1.34924 1.17396 1.08818 0.92602 0.91036 0.92588 0.90705 0.91445 0.93881 0.93303 0.91658 0.91825 0.75737 0.74427 0.85728 0.89965 0.86907 0.83319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 7.95 71.98 0.57 -2.32 16 2 C 0.02 0.45 0.75 -52.93 -0.04 0.41 16 3 C -0.15 -4.43 8.24 71.98 0.59 -3.83 16 4 C -0.14 -4.21 8.19 71.98 0.59 -3.62 16 5 C 0.14 3.91 5.64 43.52 0.25 4.16 16 6 N -0.31 -7.85 11.93 -46.67 -0.56 -8.41 16 7 N -0.45 -7.63 7.29 -56.30 -0.41 -8.04 16 8 H 0.46 3.94 8.96 -213.43 -1.91 2.03 16 9 C 0.13 2.44 11.52 84.28 0.97 3.41 16 10 C -0.31 -9.02 5.93 -20.15 -0.12 -9.14 16 11 C 0.57 21.00 7.34 86.65 0.64 21.63 16 12 O -0.49 -21.13 8.42 -4.04 -0.03 -21.16 16 13 N -0.65 -24.25 5.37 -311.64 -1.67 -25.92 16 14 C 0.34 15.98 7.41 132.78 0.98 16.97 16 15 C -0.25 -12.53 8.58 22.99 0.20 -12.33 16 16 C 0.12 6.08 5.57 -21.11 -0.12 5.96 16 17 C -0.49 -25.11 9.12 23.52 0.21 -24.89 16 18 H 0.08 3.94 7.86 -2.91 -0.02 3.92 16 19 C 0.04 1.82 5.32 85.29 0.45 2.27 16 20 N -0.82 -39.45 10.85 21.84 0.24 -39.21 16 21 Si 0.99 35.67 29.57 68.60 2.03 37.70 16 22 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 23 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 24 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 25 C -0.30 -14.47 9.90 22.84 0.23 -14.24 16 26 C 0.11 5.32 11.15 84.50 0.94 6.26 16 27 N -0.57 -28.03 7.84 -193.56 -1.52 -29.54 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 2.76 4.62 -2.38 -0.01 2.75 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 1.33 8.13 -2.39 -0.02 1.31 16 35 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 36 H 0.06 2.34 4.68 -2.39 -0.01 2.32 16 37 H 0.23 2.24 7.48 -2.91 -0.02 2.21 16 38 H 0.42 12.30 7.65 -92.71 -0.71 11.59 16 39 H 0.12 6.15 6.33 -2.91 -0.02 6.13 16 40 H 0.29 12.39 8.29 -92.71 -0.77 11.62 16 41 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 42 H 0.15 6.03 8.06 -2.91 -0.02 6.00 16 Total: -1.00 -68.89 344.15 2.88 -66.00 By element: Atomic # 1 Polarization: 39.42 SS G_CDS: -1.54 Total: 37.88 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 6.35 Total: -9.30 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -3.92 Total: -111.12 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.03 Total: -21.16 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.70 kcal Total: -68.89 2.88 -66.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000551665300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.451 kcal (2) G-P(sol) polarization free energy of solvation -68.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds