Wall clock time and date at job start Tue Mar 31 2020 11:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47147 * 2 1 4 4 C 1.50699 * 109.47158 * 240.00688 * 2 1 3 5 5 H 1.08004 * 119.99578 * 240.00105 * 4 2 1 6 6 C 1.37879 * 120.00645 * 59.99641 * 4 2 1 7 7 N 1.31511 * 119.99437 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00185 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47127 * 90.00037 * 8 6 4 10 10 H 1.48496 * 109.47092 * 209.99920 * 8 6 4 11 11 H 1.48498 * 109.47167 * 330.00172 * 8 6 4 12 12 C 1.52998 * 109.47211 * 120.00294 * 2 1 3 13 13 N 1.46502 * 109.47012 * 299.99864 * 12 2 1 14 14 C 1.34779 * 119.99821 * 180.02562 * 13 12 2 15 15 O 1.21612 * 120.00158 * 0.02562 * 14 13 12 16 16 C 1.47290 * 119.99729 * 180.02562 * 14 13 12 17 17 C 1.37960 * 126.80813 * 0.02562 * 16 14 13 18 18 N 1.34163 * 107.88728 * 179.75321 * 17 16 14 19 19 H 0.96992 * 125.16697 * 180.25085 * 18 17 16 20 20 N 1.39776 * 109.67066 * 0.23428 * 18 17 16 21 21 C 1.31359 * 109.07861 * 359.97438 * 20 18 17 22 22 C 1.48301 * 126.50896 * 180.02562 * 21 20 18 23 23 C 1.39800 * 120.54358 * 324.98172 * 22 21 20 24 24 C 1.38403 * 118.30977 * 179.97438 * 23 22 21 25 25 C 1.38319 * 119.28589 * 359.97438 * 24 23 22 26 26 N 1.31889 * 121.04134 * 0.02562 * 25 24 23 27 27 C 1.31742 * 121.85445 * 359.71434 * 26 25 24 28 28 H 1.09002 * 109.47286 * 300.00097 * 1 2 3 29 29 H 1.09001 * 109.47174 * 59.99443 * 1 2 3 30 30 H 1.08992 * 109.47269 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46695 * 180.02562 * 3 2 1 32 32 H 1.08992 * 109.46810 * 300.00121 * 3 2 1 33 33 H 1.09005 * 109.46855 * 60.00251 * 3 2 1 34 34 H 0.97001 * 119.99899 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47315 * 180.02562 * 12 2 1 36 36 H 1.08992 * 109.47032 * 59.99821 * 12 2 1 37 37 H 0.96994 * 119.99991 * 359.97438 * 13 12 2 38 38 H 1.08002 * 126.06078 * 0.02778 * 17 16 14 39 39 H 1.07999 * 120.84683 * 359.95394 * 23 22 21 40 40 H 1.08000 * 120.35925 * 180.02562 * 24 23 22 41 41 H 1.08004 * 119.48201 * 179.97438 * 25 24 23 42 42 H 1.07999 * 119.71047 * 180.26944 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3428 -2.1614 -4.4120 10 1 2.4866 -0.1411 -5.1123 11 1 3.6293 -1.7581 -3.7123 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4909 3.6695 15 8 2.5777 -1.4792 3.7810 16 6 1.3863 0.2030 4.8721 17 6 0.5889 1.3282 4.9093 18 7 0.3664 1.6332 6.1967 19 1 -0.1682 2.3795 6.5097 20 7 1.0218 0.7120 7.0186 21 6 1.6494 -0.1636 6.2669 22 6 2.4649 -1.3085 6.7395 23 6 3.2333 -1.2014 7.9025 24 6 3.9764 -2.2986 8.3016 25 6 3.9352 -3.4554 7.5444 26 7 3.2007 -3.5269 6.4513 27 6 2.4731 -2.5107 6.0348 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9564 0.8901 34 1 0.7089 1.1616 -3.4844 35 1 3.1300 -0.7209 1.2494 36 1 1.6767 -1.7489 1.2491 37 1 0.9944 0.7581 2.3564 38 1 0.2072 1.8655 4.0537 39 1 3.2468 -0.2856 8.4748 40 1 4.5814 -2.2525 9.1950 41 1 4.5142 -4.3134 7.8526 42 1 1.8809 -2.6087 5.1370 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000560502839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:29 Heat of formation + Delta-G solvation = 69.671800 kcal Electronic energy + Delta-G solvation = -25547.467063 eV Core-core repulsion = 21915.058336 eV Total energy + Delta-G solvation = -3632.408727 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.33962 -39.76809 -38.86393 -36.33528 -33.63324 -33.21859 -31.92956 -31.23377 -30.25681 -29.86889 -25.75768 -25.70599 -25.02581 -24.18550 -23.56959 -22.61368 -20.51597 -19.77931 -19.03666 -18.32306 -17.05720 -16.50623 -16.11004 -15.73756 -15.61904 -15.09045 -14.98076 -14.60345 -14.37844 -13.94145 -13.70092 -13.59167 -13.08566 -13.02848 -12.80631 -12.62475 -12.20651 -11.87505 -11.39969 -11.21990 -11.18900 -10.87436 -10.69772 -10.50724 -10.40851 -10.21600 -9.76069 -9.66062 -9.55009 -9.39434 -9.29892 -9.03421 -8.80973 -8.55993 -8.43477 -8.27381 -6.03711 -4.13321 0.79109 1.33798 1.41650 2.21090 2.46243 3.28298 3.35349 3.39559 3.66087 3.72719 3.92218 4.14197 4.40246 4.43365 4.66355 4.81552 4.93476 4.99646 5.12669 5.23546 5.29746 5.40588 5.50734 5.87735 5.95588 6.15655 6.23308 6.25763 6.33405 6.48660 6.73956 6.77553 6.79458 6.86415 6.91205 7.00128 7.02382 7.26032 7.33836 7.52923 7.68296 7.98864 8.04388 8.08230 8.14661 8.37272 8.71309 8.87766 9.52737 10.97784 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018934 B = 0.003218 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.500733 B = 8699.724039 C = 9897.732499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.133 3.867 13 N -0.711 5.711 14 C 0.580 3.420 15 O -0.545 6.545 16 C -0.271 4.271 17 C 0.107 3.893 18 N -0.464 5.464 19 H 0.444 0.556 20 N -0.285 5.285 21 C 0.173 3.827 22 C -0.081 4.081 23 C -0.047 4.047 24 C -0.191 4.191 25 C 0.107 3.893 26 N -0.488 5.488 27 C 0.170 3.830 28 H 0.005 0.995 29 H 0.085 0.915 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.085 0.915 33 H 0.004 0.996 34 H 0.259 0.741 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.394 0.606 38 H 0.191 0.809 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.154 0.846 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.063 2.680 19.023 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.011 3.989 13 N -0.360 5.360 14 C 0.367 3.633 15 O -0.425 6.425 16 C -0.286 4.286 17 C -0.042 4.042 18 N -0.170 5.170 19 H 0.288 0.712 20 N -0.106 5.106 21 C 0.004 3.996 22 C -0.086 4.086 23 C -0.074 4.074 24 C -0.211 4.211 25 C -0.050 4.050 26 N -0.196 5.196 27 C 0.012 3.988 28 H 0.024 0.976 29 H 0.104 0.896 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.023 0.977 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.229 0.771 38 H 0.207 0.793 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.171 0.829 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.918 1.698 19.599 19.694 hybrid contribution -0.068 1.203 -1.124 1.647 sum -0.986 2.900 18.475 18.727 Atomic orbital electron populations 1.21832 0.97791 0.99262 0.99943 1.18357 0.92750 0.92722 0.90645 1.21833 0.98672 0.98387 0.99935 1.20998 1.31425 1.12094 0.89860 0.92354 1.24871 0.94864 0.94897 0.98861 1.69796 1.36803 1.22765 1.23215 0.86573 0.79390 0.79390 0.82556 1.20699 1.21318 1.19852 1.21741 0.98288 0.95860 0.83043 1.46153 1.52506 1.31622 1.05758 1.17177 0.80254 0.83717 0.82200 1.90715 1.39064 1.26484 1.86221 1.21513 1.11400 1.01915 0.93816 1.23106 0.96275 0.96065 0.88802 1.45901 1.41681 1.25609 1.03822 0.71183 1.77285 1.13726 1.02908 1.16703 1.21560 0.94966 0.93395 0.89719 1.18702 0.99666 0.93001 0.97197 1.21582 0.93109 0.98801 0.93895 1.21979 1.02250 0.94454 1.02376 1.22928 0.94773 0.97034 0.90310 1.67871 1.07042 1.30919 1.13780 1.23577 0.92888 0.86194 0.96183 0.97646 0.89626 0.95339 0.95393 0.89608 0.97663 0.93038 0.92538 0.92421 0.77136 0.79258 0.84857 0.84778 0.82884 0.80445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16 4 C -0.51 -12.96 8.01 -34.44 -0.28 -13.24 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.14 9.35 55.43 0.52 -22.62 16 8 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 C 0.13 2.71 4.50 -4.04 -0.02 2.70 16 13 N -0.71 -11.90 4.95 -61.43 -0.30 -12.21 16 14 C 0.58 9.81 7.69 -12.58 -0.10 9.72 16 15 O -0.54 -10.81 12.45 5.27 0.07 -10.74 16 16 C -0.27 -3.78 6.27 -102.95 -0.65 -4.43 16 17 C 0.11 1.05 11.50 -16.63 -0.19 0.86 16 18 N -0.46 -4.16 7.20 30.81 0.22 -3.94 16 19 H 0.44 2.20 8.96 -182.85 -1.64 0.57 16 20 N -0.29 -3.55 12.64 34.57 0.44 -3.11 16 21 C 0.17 2.45 6.96 -80.56 -0.56 1.89 16 22 C -0.08 -1.18 5.75 -104.76 -0.60 -1.78 16 23 C -0.05 -0.56 9.92 -38.94 -0.39 -0.95 16 24 C -0.19 -1.99 10.10 -39.49 -0.40 -2.39 16 25 C 0.11 1.27 11.17 -17.50 -0.20 1.07 16 26 N -0.49 -7.53 10.35 -12.96 -0.13 -7.67 16 27 C 0.17 2.71 8.97 -17.18 -0.15 2.56 16 28 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 29 H 0.09 2.05 6.07 -51.93 -0.32 1.74 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 2.06 6.07 -51.93 -0.32 1.75 16 33 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 34 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.39 5.71 5.12 -40.82 -0.21 5.50 16 38 H 0.19 1.20 7.48 -52.49 -0.39 0.80 16 39 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 42 H 0.18 3.09 5.65 -52.49 -0.30 2.79 16 LS Contribution 346.31 15.07 5.22 5.22 Total: -1.00 -31.19 346.31 -8.47 -39.66 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.38 Total: 6.16 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -3.10 Total: -6.23 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.74 Total: -49.54 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.07 Total: -10.74 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.19 -8.47 -39.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560502839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.334 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds