Wall clock time and date at job start Tue Mar 31 2020 11:45:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53009 * 109.47147 * 2 1
4 4 C 1.50699 * 109.47158 * 240.00688 * 2 1 3
5 5 H 1.08004 * 119.99578 * 240.00105 * 4 2 1
6 6 C 1.37879 * 120.00645 * 59.99641 * 4 2 1
7 7 N 1.31511 * 119.99437 * 0.02562 * 6 4 2
8 8 Si 1.86795 * 120.00185 * 180.02562 * 6 4 2
9 9 H 1.48497 * 109.47127 * 90.00037 * 8 6 4
10 10 H 1.48496 * 109.47092 * 209.99920 * 8 6 4
11 11 H 1.48498 * 109.47167 * 330.00172 * 8 6 4
12 12 C 1.52998 * 109.47211 * 120.00294 * 2 1 3
13 13 N 1.46502 * 109.47012 * 299.99864 * 12 2 1
14 14 C 1.34779 * 119.99821 * 180.02562 * 13 12 2
15 15 O 1.21612 * 120.00158 * 0.02562 * 14 13 12
16 16 C 1.47290 * 119.99729 * 180.02562 * 14 13 12
17 17 C 1.37960 * 126.80813 * 0.02562 * 16 14 13
18 18 N 1.34163 * 107.88728 * 179.75321 * 17 16 14
19 19 H 0.96992 * 125.16697 * 180.25085 * 18 17 16
20 20 N 1.39776 * 109.67066 * 0.23428 * 18 17 16
21 21 C 1.31359 * 109.07861 * 359.97438 * 20 18 17
22 22 C 1.48301 * 126.50896 * 180.02562 * 21 20 18
23 23 C 1.39800 * 120.54358 * 324.98172 * 22 21 20
24 24 C 1.38403 * 118.30977 * 179.97438 * 23 22 21
25 25 C 1.38319 * 119.28589 * 359.97438 * 24 23 22
26 26 N 1.31889 * 121.04134 * 0.02562 * 25 24 23
27 27 C 1.31742 * 121.85445 * 359.71434 * 26 25 24
28 28 H 1.09002 * 109.47286 * 300.00097 * 1 2 3
29 29 H 1.09001 * 109.47174 * 59.99443 * 1 2 3
30 30 H 1.08992 * 109.47269 * 179.97438 * 1 2 3
31 31 H 1.08997 * 109.46695 * 180.02562 * 3 2 1
32 32 H 1.08992 * 109.46810 * 300.00121 * 3 2 1
33 33 H 1.09005 * 109.46855 * 60.00251 * 3 2 1
34 34 H 0.97001 * 119.99899 * 180.02562 * 7 6 4
35 35 H 1.09000 * 109.47315 * 180.02562 * 12 2 1
36 36 H 1.08992 * 109.47032 * 59.99821 * 12 2 1
37 37 H 0.96994 * 119.99991 * 359.97438 * 13 12 2
38 38 H 1.08002 * 126.06078 * 0.02778 * 17 16 14
39 39 H 1.07999 * 120.84683 * 359.95394 * 23 22 21
40 40 H 1.08000 * 120.35925 * 180.02562 * 24 23 22
41 41 H 1.08004 * 119.48201 * 179.97438 * 25 24 23
42 42 H 1.07999 * 119.71047 * 180.26944 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0323 -0.7103 -1.2305
5 1 2.6532 -1.5884 -1.1315
6 6 1.6993 -0.2392 -2.4828
7 7 0.9435 0.8303 -2.6034
8 14 2.3214 -1.1201 -4.0080
9 1 1.3428 -2.1614 -4.4120
10 1 2.4866 -0.1411 -5.1123
11 1 3.6293 -1.7581 -3.7123
12 6 2.0400 -0.7213 1.2492
13 7 1.5517 -0.0307 2.4454
14 6 1.8778 -0.4909 3.6695
15 8 2.5777 -1.4792 3.7810
16 6 1.3863 0.2030 4.8721
17 6 0.5889 1.3282 4.9093
18 7 0.3664 1.6332 6.1967
19 1 -0.1682 2.3795 6.5097
20 7 1.0218 0.7120 7.0186
21 6 1.6494 -0.1636 6.2669
22 6 2.4649 -1.3085 6.7395
23 6 3.2333 -1.2014 7.9025
24 6 3.9764 -2.2986 8.3016
25 6 3.9352 -3.4554 7.5444
26 7 3.2007 -3.5269 6.4513
27 6 2.4731 -2.5107 6.0348
28 1 -0.3634 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3633 -1.0276 -0.0005
31 1 3.1300 1.4425 -0.0005
32 1 1.6767 1.9563 -0.8899
33 1 1.6767 1.9564 0.8901
34 1 0.7089 1.1616 -3.4844
35 1 3.1300 -0.7209 1.2494
36 1 1.6767 -1.7489 1.2491
37 1 0.9944 0.7581 2.3564
38 1 0.2072 1.8655 4.0537
39 1 3.2468 -0.2856 8.4748
40 1 4.5814 -2.2525 9.1950
41 1 4.5142 -4.3134 7.8526
42 1 1.8809 -2.6087 5.1370
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000560502839.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:45:29
Heat of formation + Delta-G solvation = 69.671800 kcal
Electronic energy + Delta-G solvation = -25547.467063 eV
Core-core repulsion = 21915.058336 eV
Total energy + Delta-G solvation = -3632.408727 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.148 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.33962 -39.76809 -38.86393 -36.33528 -33.63324 -33.21859 -31.92956 -31.23377
-30.25681 -29.86889 -25.75768 -25.70599 -25.02581 -24.18550 -23.56959 -22.61368
-20.51597 -19.77931 -19.03666 -18.32306 -17.05720 -16.50623 -16.11004 -15.73756
-15.61904 -15.09045 -14.98076 -14.60345 -14.37844 -13.94145 -13.70092 -13.59167
-13.08566 -13.02848 -12.80631 -12.62475 -12.20651 -11.87505 -11.39969 -11.21990
-11.18900 -10.87436 -10.69772 -10.50724 -10.40851 -10.21600 -9.76069 -9.66062
-9.55009 -9.39434 -9.29892 -9.03421 -8.80973 -8.55993 -8.43477 -8.27381
-6.03711 -4.13321 0.79109 1.33798 1.41650 2.21090 2.46243 3.28298
3.35349 3.39559 3.66087 3.72719 3.92218 4.14197 4.40246 4.43365
4.66355 4.81552 4.93476 4.99646 5.12669 5.23546 5.29746 5.40588
5.50734 5.87735 5.95588 6.15655 6.23308 6.25763 6.33405 6.48660
6.73956 6.77553 6.79458 6.86415 6.91205 7.00128 7.02382 7.26032
7.33836 7.52923 7.68296 7.98864 8.04388 8.08230 8.14661 8.37272
8.71309 8.87766 9.52737 10.97784
Molecular weight = 314.15amu
Principal moments of inertia in cm(-1)
A = 0.018934 B = 0.003218 C = 0.002828
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1478.500733 B = 8699.724039 C = 9897.732499
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C 0.056 3.944
3 C -0.131 4.131
4 C -0.505 4.505
5 H 0.058 0.942
6 C 0.066 3.934
7 N -0.887 5.887
8 Si 0.893 3.107
9 H -0.281 1.281
10 H -0.287 1.287
11 H -0.274 1.274
12 C 0.133 3.867
13 N -0.711 5.711
14 C 0.580 3.420
15 O -0.545 6.545
16 C -0.271 4.271
17 C 0.107 3.893
18 N -0.464 5.464
19 H 0.444 0.556
20 N -0.285 5.285
21 C 0.173 3.827
22 C -0.081 4.081
23 C -0.047 4.047
24 C -0.191 4.191
25 C 0.107 3.893
26 N -0.488 5.488
27 C 0.170 3.830
28 H 0.005 0.995
29 H 0.085 0.915
30 H 0.027 0.973
31 H 0.027 0.973
32 H 0.085 0.915
33 H 0.004 0.996
34 H 0.259 0.741
35 H 0.056 0.944
36 H 0.057 0.943
37 H 0.394 0.606
38 H 0.191 0.809
39 H 0.134 0.866
40 H 0.134 0.866
41 H 0.154 0.846
42 H 0.179 0.821
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.063 2.680 19.023 19.240
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C 0.055 3.945
3 C -0.188 4.188
4 C -0.544 4.544
5 H 0.076 0.924
6 C -0.135 4.135
7 N -0.526 5.526
8 Si 0.721 3.279
9 H -0.207 1.207
10 H -0.213 1.213
11 H -0.199 1.199
12 C 0.011 3.989
13 N -0.360 5.360
14 C 0.367 3.633
15 O -0.425 6.425
16 C -0.286 4.286
17 C -0.042 4.042
18 N -0.170 5.170
19 H 0.288 0.712
20 N -0.106 5.106
21 C 0.004 3.996
22 C -0.086 4.086
23 C -0.074 4.074
24 C -0.211 4.211
25 C -0.050 4.050
26 N -0.196 5.196
27 C 0.012 3.988
28 H 0.024 0.976
29 H 0.104 0.896
30 H 0.047 0.953
31 H 0.046 0.954
32 H 0.104 0.896
33 H 0.023 0.977
34 H 0.070 0.930
35 H 0.075 0.925
36 H 0.076 0.924
37 H 0.229 0.771
38 H 0.207 0.793
39 H 0.151 0.849
40 H 0.152 0.848
41 H 0.171 0.829
42 H 0.196 0.804
Dipole moment (debyes) X Y Z Total
from point charges -0.918 1.698 19.599 19.694
hybrid contribution -0.068 1.203 -1.124 1.647
sum -0.986 2.900 18.475 18.727
Atomic orbital electron populations
1.21832 0.97791 0.99262 0.99943 1.18357 0.92750 0.92722 0.90645
1.21833 0.98672 0.98387 0.99935 1.20998 1.31425 1.12094 0.89860
0.92354 1.24871 0.94864 0.94897 0.98861 1.69796 1.36803 1.22765
1.23215 0.86573 0.79390 0.79390 0.82556 1.20699 1.21318 1.19852
1.21741 0.98288 0.95860 0.83043 1.46153 1.52506 1.31622 1.05758
1.17177 0.80254 0.83717 0.82200 1.90715 1.39064 1.26484 1.86221
1.21513 1.11400 1.01915 0.93816 1.23106 0.96275 0.96065 0.88802
1.45901 1.41681 1.25609 1.03822 0.71183 1.77285 1.13726 1.02908
1.16703 1.21560 0.94966 0.93395 0.89719 1.18702 0.99666 0.93001
0.97197 1.21582 0.93109 0.98801 0.93895 1.21979 1.02250 0.94454
1.02376 1.22928 0.94773 0.97034 0.90310 1.67871 1.07042 1.30919
1.13780 1.23577 0.92888 0.86194 0.96183 0.97646 0.89626 0.95339
0.95393 0.89608 0.97663 0.93038 0.92538 0.92421 0.77136 0.79258
0.84857 0.84778 0.82884 0.80445
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16
2 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16
3 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16
4 C -0.51 -12.96 8.01 -34.44 -0.28 -13.24 16
5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16
6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16
7 N -0.89 -23.14 9.35 55.43 0.52 -22.62 16
8 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16
9 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16
10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16
11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16
12 C 0.13 2.71 4.50 -4.04 -0.02 2.70 16
13 N -0.71 -11.90 4.95 -61.43 -0.30 -12.21 16
14 C 0.58 9.81 7.69 -12.58 -0.10 9.72 16
15 O -0.54 -10.81 12.45 5.27 0.07 -10.74 16
16 C -0.27 -3.78 6.27 -102.95 -0.65 -4.43 16
17 C 0.11 1.05 11.50 -16.63 -0.19 0.86 16
18 N -0.46 -4.16 7.20 30.81 0.22 -3.94 16
19 H 0.44 2.20 8.96 -182.85 -1.64 0.57 16
20 N -0.29 -3.55 12.64 34.57 0.44 -3.11 16
21 C 0.17 2.45 6.96 -80.56 -0.56 1.89 16
22 C -0.08 -1.18 5.75 -104.76 -0.60 -1.78 16
23 C -0.05 -0.56 9.92 -38.94 -0.39 -0.95 16
24 C -0.19 -1.99 10.10 -39.49 -0.40 -2.39 16
25 C 0.11 1.27 11.17 -17.50 -0.20 1.07 16
26 N -0.49 -7.53 10.35 -12.96 -0.13 -7.67 16
27 C 0.17 2.71 8.97 -17.18 -0.15 2.56 16
28 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16
29 H 0.09 2.05 6.07 -51.93 -0.32 1.74 16
30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16
31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16
32 H 0.09 2.06 6.07 -51.93 -0.32 1.75 16
33 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16
34 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16
35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16
36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16
37 H 0.39 5.71 5.12 -40.82 -0.21 5.50 16
38 H 0.19 1.20 7.48 -52.49 -0.39 0.80 16
39 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16
40 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16
41 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16
42 H 0.18 3.09 5.65 -52.49 -0.30 2.79 16
LS Contribution 346.31 15.07 5.22 5.22
Total: -1.00 -31.19 346.31 -8.47 -39.66
By element:
Atomic # 1 Polarization: 12.54 SS G_CDS: -6.38 Total: 6.16 kcal
Atomic # 6 Polarization: -3.13 SS G_CDS: -3.10 Total: -6.23 kcal
Atomic # 7 Polarization: -50.28 SS G_CDS: 0.74 Total: -49.54 kcal
Atomic # 8 Polarization: -10.81 SS G_CDS: 0.07 Total: -10.74 kcal
Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal
Total LS contribution 5.22 Total: 5.22 kcal
Total: -31.19 -8.47 -39.66 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000560502839.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.334 kcal
(2) G-P(sol) polarization free energy of solvation -31.189 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.145 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal
(6) G-S(sol) free energy of system = (1) + (5) 69.672 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds