Wall clock time and date at job start Tue Mar 31 2020 11:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47147 * 2 1 4 4 C 1.50699 * 109.47158 * 240.00688 * 2 1 3 5 5 H 1.08004 * 119.99578 * 240.00105 * 4 2 1 6 6 C 1.37879 * 120.00645 * 59.99641 * 4 2 1 7 7 N 1.31511 * 119.99437 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00185 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47127 * 90.00037 * 8 6 4 10 10 H 1.48496 * 109.47092 * 209.99920 * 8 6 4 11 11 H 1.48498 * 109.47167 * 330.00172 * 8 6 4 12 12 C 1.52998 * 109.47211 * 120.00294 * 2 1 3 13 13 N 1.46502 * 109.47012 * 299.99864 * 12 2 1 14 14 C 1.34779 * 119.99821 * 180.02562 * 13 12 2 15 15 O 1.21612 * 120.00158 * 0.02562 * 14 13 12 16 16 C 1.47290 * 119.99729 * 180.02562 * 14 13 12 17 17 C 1.37960 * 126.80813 * 0.02562 * 16 14 13 18 18 N 1.34163 * 107.88728 * 179.75321 * 17 16 14 19 19 H 0.96992 * 125.16697 * 180.25085 * 18 17 16 20 20 N 1.39776 * 109.67066 * 0.23428 * 18 17 16 21 21 C 1.31359 * 109.07861 * 359.97438 * 20 18 17 22 22 C 1.48301 * 126.50896 * 180.02562 * 21 20 18 23 23 C 1.39800 * 120.54358 * 324.98172 * 22 21 20 24 24 C 1.38403 * 118.30977 * 179.97438 * 23 22 21 25 25 C 1.38319 * 119.28589 * 359.97438 * 24 23 22 26 26 N 1.31889 * 121.04134 * 0.02562 * 25 24 23 27 27 C 1.31742 * 121.85445 * 359.71434 * 26 25 24 28 28 H 1.09002 * 109.47286 * 300.00097 * 1 2 3 29 29 H 1.09001 * 109.47174 * 59.99443 * 1 2 3 30 30 H 1.08992 * 109.47269 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46695 * 180.02562 * 3 2 1 32 32 H 1.08992 * 109.46810 * 300.00121 * 3 2 1 33 33 H 1.09005 * 109.46855 * 60.00251 * 3 2 1 34 34 H 0.97001 * 119.99899 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47315 * 180.02562 * 12 2 1 36 36 H 1.08992 * 109.47032 * 59.99821 * 12 2 1 37 37 H 0.96994 * 119.99991 * 359.97438 * 13 12 2 38 38 H 1.08002 * 126.06078 * 0.02778 * 17 16 14 39 39 H 1.07999 * 120.84683 * 359.95394 * 23 22 21 40 40 H 1.08000 * 120.35925 * 180.02562 * 24 23 22 41 41 H 1.08004 * 119.48201 * 179.97438 * 25 24 23 42 42 H 1.07999 * 119.71047 * 180.26944 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3428 -2.1614 -4.4120 10 1 2.4866 -0.1411 -5.1123 11 1 3.6293 -1.7581 -3.7123 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4909 3.6695 15 8 2.5777 -1.4792 3.7810 16 6 1.3863 0.2030 4.8721 17 6 0.5889 1.3282 4.9093 18 7 0.3664 1.6332 6.1967 19 1 -0.1682 2.3795 6.5097 20 7 1.0218 0.7120 7.0186 21 6 1.6494 -0.1636 6.2669 22 6 2.4649 -1.3085 6.7395 23 6 3.2333 -1.2014 7.9025 24 6 3.9764 -2.2986 8.3016 25 6 3.9352 -3.4554 7.5444 26 7 3.2007 -3.5269 6.4513 27 6 2.4731 -2.5107 6.0348 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9564 0.8901 34 1 0.7089 1.1616 -3.4844 35 1 3.1300 -0.7209 1.2494 36 1 1.6767 -1.7489 1.2491 37 1 0.9944 0.7581 2.3564 38 1 0.2072 1.8655 4.0537 39 1 3.2468 -0.2856 8.4748 40 1 4.5814 -2.2525 9.1950 41 1 4.5142 -4.3134 7.8526 42 1 1.8809 -2.6087 5.1370 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000560502839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:28 Heat of formation + Delta-G solvation = 48.630305 kcal Electronic energy + Delta-G solvation = -25548.379491 eV Core-core repulsion = 21915.058336 eV Total energy + Delta-G solvation = -3633.321155 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.27967 -40.73088 -40.23775 -38.00735 -35.03941 -34.39050 -32.89012 -32.86951 -31.30093 -30.93310 -27.50866 -27.43369 -26.75921 -25.13208 -24.56809 -23.78223 -21.52303 -20.92742 -20.60290 -19.50431 -18.06012 -17.91342 -17.37966 -17.09215 -16.59909 -16.57457 -16.22979 -16.16290 -15.55968 -15.02448 -14.84469 -14.74393 -14.67507 -14.33907 -14.01014 -13.96237 -13.73970 -13.15712 -13.05316 -12.81472 -12.63129 -12.58475 -12.20294 -12.13710 -12.10727 -11.44611 -11.43100 -11.22097 -10.87337 -10.65738 -10.57124 -10.40488 -10.36010 -10.07494 -9.76536 -9.48207 -8.00328 -6.14921 -0.18022 0.38151 0.52311 1.19323 1.43364 1.46749 1.54643 1.70722 2.37212 2.45184 2.53828 2.93672 3.20705 3.23609 3.56694 3.74064 3.98933 4.04420 4.11893 4.18082 4.36079 4.42973 4.54576 4.58268 4.63135 4.77542 4.91756 5.02389 5.08357 5.10846 5.16706 5.23868 5.25357 5.27219 5.43341 5.65988 5.70754 5.72497 5.80291 6.18862 6.21481 6.26371 6.38696 6.47788 6.79458 6.89317 7.08788 7.43123 7.52586 8.98341 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018934 B = 0.003218 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.500733 B = 8699.724039 C = 9897.732499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.529 4.529 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.941 3.059 9 H -0.280 1.280 10 H -0.283 1.283 11 H -0.278 1.278 12 C 0.151 3.849 13 N -0.703 5.703 14 C 0.580 3.420 15 O -0.581 6.581 16 C -0.311 4.311 17 C 0.144 3.856 18 N -0.441 5.441 19 H 0.464 0.536 20 N -0.294 5.294 21 C 0.159 3.841 22 C -0.097 4.097 23 C -0.051 4.051 24 C -0.174 4.174 25 C 0.096 3.904 26 N -0.522 5.522 27 C 0.145 3.855 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.016 0.984 31 H 0.015 0.985 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.260 0.740 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.407 0.593 38 H 0.233 0.767 39 H 0.153 0.847 40 H 0.177 0.823 41 H 0.185 0.815 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.474 4.520 21.130 21.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.060 0.940 6 C -0.169 4.169 7 N -0.536 5.536 8 Si 0.768 3.232 9 H -0.206 1.206 10 H -0.208 1.208 11 H -0.203 1.203 12 C 0.027 3.973 13 N -0.354 5.354 14 C 0.369 3.631 15 O -0.463 6.463 16 C -0.326 4.326 17 C -0.009 4.009 18 N -0.149 5.149 19 H 0.313 0.687 20 N -0.116 5.116 21 C -0.010 4.010 22 C -0.101 4.101 23 C -0.078 4.078 24 C -0.193 4.193 25 C -0.061 4.061 26 N -0.231 5.231 27 C -0.013 4.013 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.244 0.756 38 H 0.249 0.751 39 H 0.171 0.829 40 H 0.194 0.806 41 H 0.202 0.798 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.364 3.582 21.741 22.076 hybrid contribution 0.059 0.644 -1.676 1.796 sum -1.305 4.226 20.065 20.547 Atomic orbital electron populations 1.21672 0.96905 0.98687 1.00595 1.18344 0.93370 0.93042 0.90061 1.21673 0.97817 0.97772 1.00589 1.21303 1.31595 1.12098 0.91760 0.94003 1.25390 0.95208 0.95582 1.00759 1.69890 1.37053 1.23172 1.23520 0.85827 0.78641 0.78563 0.80181 1.20568 1.20809 1.20280 1.21237 0.96882 0.95102 0.84037 1.45855 1.52931 1.31912 1.04697 1.17584 0.79455 0.83223 0.82826 1.90715 1.40684 1.28171 1.86757 1.21268 1.14631 1.04243 0.92450 1.23598 0.93326 0.93962 0.89978 1.45953 1.40406 1.25152 1.03391 0.68670 1.77234 1.13946 1.03237 1.17168 1.21615 0.95510 0.93782 0.90069 1.18842 1.00540 0.92677 0.98066 1.21903 0.92610 1.00121 0.93163 1.22415 1.01061 0.92992 1.02855 1.23519 0.94280 0.98883 0.89396 1.67776 1.08157 1.31469 1.15700 1.23203 0.94144 0.87574 0.96380 0.93881 0.91923 0.96509 0.96604 0.91892 0.93911 0.93068 0.94628 0.94362 0.75550 0.75081 0.82894 0.80605 0.79810 0.83174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 8.08 71.98 0.58 -4.52 16 2 C 0.05 2.35 0.50 -52.93 -0.03 2.32 16 3 C -0.12 -5.11 8.08 71.99 0.58 -4.53 16 4 C -0.53 -27.75 8.01 25.60 0.21 -27.55 16 5 H 0.04 2.27 7.74 -2.91 -0.02 2.25 16 6 C 0.03 1.58 5.15 84.66 0.44 2.02 16 7 N -0.90 -46.91 9.35 21.45 0.20 -46.71 16 8 Si 0.94 42.48 29.54 68.60 2.03 44.50 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 12 C 0.15 6.31 4.50 86.38 0.39 6.70 16 13 N -0.70 -23.03 4.95 -466.52 -2.31 -25.34 16 14 C 0.58 19.79 7.69 86.62 0.67 20.46 16 15 O -0.58 -24.31 12.45 -4.07 -0.05 -24.36 16 16 C -0.31 -8.29 6.27 -18.78 -0.12 -8.41 16 17 C 0.14 2.29 11.50 84.27 0.97 3.26 16 18 N -0.44 -6.30 7.20 -56.42 -0.41 -6.70 16 19 H 0.46 2.57 8.96 -213.54 -1.91 0.66 16 20 N -0.29 -6.67 12.64 -44.52 -0.56 -7.24 16 21 C 0.16 4.38 6.96 44.08 0.31 4.69 16 22 C -0.10 -2.83 5.75 -19.95 -0.11 -2.94 16 23 C -0.05 -1.15 9.92 22.69 0.23 -0.92 16 24 C -0.17 -3.23 10.10 22.33 0.23 -3.00 16 25 C 0.10 2.19 11.17 84.70 0.95 3.13 16 26 N -0.52 -16.70 10.35 -194.91 -2.02 -18.71 16 27 C 0.14 4.89 8.97 84.97 0.76 5.65 16 28 H 0.04 1.45 6.86 -2.39 -0.02 1.43 16 29 H 0.06 2.97 6.07 -2.39 -0.01 2.95 16 30 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 2.98 6.07 -2.39 -0.01 2.97 16 33 H 0.04 1.44 6.86 -2.38 -0.02 1.42 16 34 H 0.26 13.11 8.31 -92.71 -0.77 12.34 16 35 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.41 10.70 5.12 -92.71 -0.47 10.22 16 38 H 0.23 1.62 7.48 -2.91 -0.02 1.59 16 39 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 40 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 41 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 42 H 0.15 5.75 5.65 -2.91 -0.02 5.74 16 Total: -1.00 -71.86 346.31 1.61 -70.25 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -1.31 Total: 17.94 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 6.03 Total: -3.64 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -5.09 Total: -104.70 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.05 Total: -24.36 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -71.86 1.61 -70.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560502839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.881 kcal (2) G-P(sol) polarization free energy of solvation -71.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds