Wall clock time and date at job start Tue Mar 31 2020 11:45:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53009 * 109.47147 * 2 1
4 4 C 1.50699 * 109.47158 * 240.00688 * 2 1 3
5 5 H 1.08004 * 119.99578 * 240.00105 * 4 2 1
6 6 C 1.37879 * 120.00645 * 59.99641 * 4 2 1
7 7 N 1.31511 * 119.99437 * 0.02562 * 6 4 2
8 8 Si 1.86795 * 120.00185 * 180.02562 * 6 4 2
9 9 H 1.48497 * 109.47127 * 90.00037 * 8 6 4
10 10 H 1.48496 * 109.47092 * 209.99920 * 8 6 4
11 11 H 1.48498 * 109.47167 * 330.00172 * 8 6 4
12 12 C 1.52998 * 109.47211 * 120.00294 * 2 1 3
13 13 N 1.46502 * 109.47012 * 299.99864 * 12 2 1
14 14 C 1.34779 * 119.99821 * 180.02562 * 13 12 2
15 15 O 1.21612 * 120.00158 * 0.02562 * 14 13 12
16 16 C 1.47290 * 119.99729 * 180.02562 * 14 13 12
17 17 C 1.37960 * 126.80813 * 0.02562 * 16 14 13
18 18 N 1.34163 * 107.88728 * 179.75321 * 17 16 14
19 19 H 0.96992 * 125.16697 * 180.25085 * 18 17 16
20 20 N 1.39776 * 109.67066 * 0.23428 * 18 17 16
21 21 C 1.31359 * 109.07861 * 359.97438 * 20 18 17
22 22 C 1.48301 * 126.50896 * 180.02562 * 21 20 18
23 23 C 1.39800 * 120.54358 * 324.98172 * 22 21 20
24 24 C 1.38403 * 118.30977 * 179.97438 * 23 22 21
25 25 C 1.38319 * 119.28589 * 359.97438 * 24 23 22
26 26 N 1.31889 * 121.04134 * 0.02562 * 25 24 23
27 27 C 1.31742 * 121.85445 * 359.71434 * 26 25 24
28 28 H 1.09002 * 109.47286 * 300.00097 * 1 2 3
29 29 H 1.09001 * 109.47174 * 59.99443 * 1 2 3
30 30 H 1.08992 * 109.47269 * 179.97438 * 1 2 3
31 31 H 1.08997 * 109.46695 * 180.02562 * 3 2 1
32 32 H 1.08992 * 109.46810 * 300.00121 * 3 2 1
33 33 H 1.09005 * 109.46855 * 60.00251 * 3 2 1
34 34 H 0.97001 * 119.99899 * 180.02562 * 7 6 4
35 35 H 1.09000 * 109.47315 * 180.02562 * 12 2 1
36 36 H 1.08992 * 109.47032 * 59.99821 * 12 2 1
37 37 H 0.96994 * 119.99991 * 359.97438 * 13 12 2
38 38 H 1.08002 * 126.06078 * 0.02778 * 17 16 14
39 39 H 1.07999 * 120.84683 * 359.95394 * 23 22 21
40 40 H 1.08000 * 120.35925 * 180.02562 * 24 23 22
41 41 H 1.08004 * 119.48201 * 179.97438 * 25 24 23
42 42 H 1.07999 * 119.71047 * 180.26944 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0323 -0.7103 -1.2305
5 1 2.6532 -1.5884 -1.1315
6 6 1.6993 -0.2392 -2.4828
7 7 0.9435 0.8303 -2.6034
8 14 2.3214 -1.1201 -4.0080
9 1 1.3428 -2.1614 -4.4120
10 1 2.4866 -0.1411 -5.1123
11 1 3.6293 -1.7581 -3.7123
12 6 2.0400 -0.7213 1.2492
13 7 1.5517 -0.0307 2.4454
14 6 1.8778 -0.4909 3.6695
15 8 2.5777 -1.4792 3.7810
16 6 1.3863 0.2030 4.8721
17 6 0.5889 1.3282 4.9093
18 7 0.3664 1.6332 6.1967
19 1 -0.1682 2.3795 6.5097
20 7 1.0218 0.7120 7.0186
21 6 1.6494 -0.1636 6.2669
22 6 2.4649 -1.3085 6.7395
23 6 3.2333 -1.2014 7.9025
24 6 3.9764 -2.2986 8.3016
25 6 3.9352 -3.4554 7.5444
26 7 3.2007 -3.5269 6.4513
27 6 2.4731 -2.5107 6.0348
28 1 -0.3634 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3633 -1.0276 -0.0005
31 1 3.1300 1.4425 -0.0005
32 1 1.6767 1.9563 -0.8899
33 1 1.6767 1.9564 0.8901
34 1 0.7089 1.1616 -3.4844
35 1 3.1300 -0.7209 1.2494
36 1 1.6767 -1.7489 1.2491
37 1 0.9944 0.7581 2.3564
38 1 0.2072 1.8655 4.0537
39 1 3.2468 -0.2856 8.4748
40 1 4.5814 -2.2525 9.1950
41 1 4.5142 -4.3134 7.8526
42 1 1.8809 -2.6087 5.1370
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000560502839.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:45:28
Heat of formation + Delta-G solvation = 48.630305 kcal
Electronic energy + Delta-G solvation = -25548.379491 eV
Core-core repulsion = 21915.058336 eV
Total energy + Delta-G solvation = -3633.321155 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.148 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-42.27967 -40.73088 -40.23775 -38.00735 -35.03941 -34.39050 -32.89012 -32.86951
-31.30093 -30.93310 -27.50866 -27.43369 -26.75921 -25.13208 -24.56809 -23.78223
-21.52303 -20.92742 -20.60290 -19.50431 -18.06012 -17.91342 -17.37966 -17.09215
-16.59909 -16.57457 -16.22979 -16.16290 -15.55968 -15.02448 -14.84469 -14.74393
-14.67507 -14.33907 -14.01014 -13.96237 -13.73970 -13.15712 -13.05316 -12.81472
-12.63129 -12.58475 -12.20294 -12.13710 -12.10727 -11.44611 -11.43100 -11.22097
-10.87337 -10.65738 -10.57124 -10.40488 -10.36010 -10.07494 -9.76536 -9.48207
-8.00328 -6.14921 -0.18022 0.38151 0.52311 1.19323 1.43364 1.46749
1.54643 1.70722 2.37212 2.45184 2.53828 2.93672 3.20705 3.23609
3.56694 3.74064 3.98933 4.04420 4.11893 4.18082 4.36079 4.42973
4.54576 4.58268 4.63135 4.77542 4.91756 5.02389 5.08357 5.10846
5.16706 5.23868 5.25357 5.27219 5.43341 5.65988 5.70754 5.72497
5.80291 6.18862 6.21481 6.26371 6.38696 6.47788 6.79458 6.89317
7.08788 7.43123 7.52586 8.98341
Molecular weight = 314.15amu
Principal moments of inertia in cm(-1)
A = 0.018934 B = 0.003218 C = 0.002828
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1478.500733 B = 8699.724039 C = 9897.732499
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C 0.052 3.948
3 C -0.121 4.121
4 C -0.529 4.529
5 H 0.042 0.958
6 C 0.030 3.970
7 N -0.898 5.898
8 Si 0.941 3.059
9 H -0.280 1.280
10 H -0.283 1.283
11 H -0.278 1.278
12 C 0.151 3.849
13 N -0.703 5.703
14 C 0.580 3.420
15 O -0.581 6.581
16 C -0.311 4.311
17 C 0.144 3.856
18 N -0.441 5.441
19 H 0.464 0.536
20 N -0.294 5.294
21 C 0.159 3.841
22 C -0.097 4.097
23 C -0.051 4.051
24 C -0.174 4.174
25 C 0.096 3.904
26 N -0.522 5.522
27 C 0.145 3.855
28 H 0.042 0.958
29 H 0.062 0.938
30 H 0.016 0.984
31 H 0.015 0.985
32 H 0.062 0.938
33 H 0.042 0.958
34 H 0.260 0.740
35 H 0.035 0.965
36 H 0.038 0.962
37 H 0.407 0.593
38 H 0.233 0.767
39 H 0.153 0.847
40 H 0.177 0.823
41 H 0.185 0.815
42 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.474 4.520 21.130 21.659
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.052 3.948
3 C -0.179 4.179
4 C -0.568 4.568
5 H 0.060 0.940
6 C -0.169 4.169
7 N -0.536 5.536
8 Si 0.768 3.232
9 H -0.206 1.206
10 H -0.208 1.208
11 H -0.203 1.203
12 C 0.027 3.973
13 N -0.354 5.354
14 C 0.369 3.631
15 O -0.463 6.463
16 C -0.326 4.326
17 C -0.009 4.009
18 N -0.149 5.149
19 H 0.313 0.687
20 N -0.116 5.116
21 C -0.010 4.010
22 C -0.101 4.101
23 C -0.078 4.078
24 C -0.193 4.193
25 C -0.061 4.061
26 N -0.231 5.231
27 C -0.013 4.013
28 H 0.061 0.939
29 H 0.081 0.919
30 H 0.035 0.965
31 H 0.034 0.966
32 H 0.081 0.919
33 H 0.061 0.939
34 H 0.069 0.931
35 H 0.054 0.946
36 H 0.056 0.944
37 H 0.244 0.756
38 H 0.249 0.751
39 H 0.171 0.829
40 H 0.194 0.806
41 H 0.202 0.798
42 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges -1.364 3.582 21.741 22.076
hybrid contribution 0.059 0.644 -1.676 1.796
sum -1.305 4.226 20.065 20.547
Atomic orbital electron populations
1.21672 0.96905 0.98687 1.00595 1.18344 0.93370 0.93042 0.90061
1.21673 0.97817 0.97772 1.00589 1.21303 1.31595 1.12098 0.91760
0.94003 1.25390 0.95208 0.95582 1.00759 1.69890 1.37053 1.23172
1.23520 0.85827 0.78641 0.78563 0.80181 1.20568 1.20809 1.20280
1.21237 0.96882 0.95102 0.84037 1.45855 1.52931 1.31912 1.04697
1.17584 0.79455 0.83223 0.82826 1.90715 1.40684 1.28171 1.86757
1.21268 1.14631 1.04243 0.92450 1.23598 0.93326 0.93962 0.89978
1.45953 1.40406 1.25152 1.03391 0.68670 1.77234 1.13946 1.03237
1.17168 1.21615 0.95510 0.93782 0.90069 1.18842 1.00540 0.92677
0.98066 1.21903 0.92610 1.00121 0.93163 1.22415 1.01061 0.92992
1.02855 1.23519 0.94280 0.98883 0.89396 1.67776 1.08157 1.31469
1.15700 1.23203 0.94144 0.87574 0.96380 0.93881 0.91923 0.96509
0.96604 0.91892 0.93911 0.93068 0.94628 0.94362 0.75550 0.75081
0.82894 0.80605 0.79810 0.83174
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.10 8.08 71.98 0.58 -4.52 16
2 C 0.05 2.35 0.50 -52.93 -0.03 2.32 16
3 C -0.12 -5.11 8.08 71.99 0.58 -4.53 16
4 C -0.53 -27.75 8.01 25.60 0.21 -27.55 16
5 H 0.04 2.27 7.74 -2.91 -0.02 2.25 16
6 C 0.03 1.58 5.15 84.66 0.44 2.02 16
7 N -0.90 -46.91 9.35 21.45 0.20 -46.71 16
8 Si 0.94 42.48 29.54 68.60 2.03 44.50 16
9 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16
10 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16
11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16
12 C 0.15 6.31 4.50 86.38 0.39 6.70 16
13 N -0.70 -23.03 4.95 -466.52 -2.31 -25.34 16
14 C 0.58 19.79 7.69 86.62 0.67 20.46 16
15 O -0.58 -24.31 12.45 -4.07 -0.05 -24.36 16
16 C -0.31 -8.29 6.27 -18.78 -0.12 -8.41 16
17 C 0.14 2.29 11.50 84.27 0.97 3.26 16
18 N -0.44 -6.30 7.20 -56.42 -0.41 -6.70 16
19 H 0.46 2.57 8.96 -213.54 -1.91 0.66 16
20 N -0.29 -6.67 12.64 -44.52 -0.56 -7.24 16
21 C 0.16 4.38 6.96 44.08 0.31 4.69 16
22 C -0.10 -2.83 5.75 -19.95 -0.11 -2.94 16
23 C -0.05 -1.15 9.92 22.69 0.23 -0.92 16
24 C -0.17 -3.23 10.10 22.33 0.23 -3.00 16
25 C 0.10 2.19 11.17 84.70 0.95 3.13 16
26 N -0.52 -16.70 10.35 -194.91 -2.02 -18.71 16
27 C 0.14 4.89 8.97 84.97 0.76 5.65 16
28 H 0.04 1.45 6.86 -2.39 -0.02 1.43 16
29 H 0.06 2.97 6.07 -2.39 -0.01 2.95 16
30 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16
31 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16
32 H 0.06 2.98 6.07 -2.39 -0.01 2.97 16
33 H 0.04 1.44 6.86 -2.38 -0.02 1.42 16
34 H 0.26 13.11 8.31 -92.71 -0.77 12.34 16
35 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16
36 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16
37 H 0.41 10.70 5.12 -92.71 -0.47 10.22 16
38 H 0.23 1.62 7.48 -2.91 -0.02 1.59 16
39 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16
40 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16
41 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16
42 H 0.15 5.75 5.65 -2.91 -0.02 5.74 16
Total: -1.00 -71.86 346.31 1.61 -70.25
By element:
Atomic # 1 Polarization: 19.25 SS G_CDS: -1.31 Total: 17.94 kcal
Atomic # 6 Polarization: -9.68 SS G_CDS: 6.03 Total: -3.64 kcal
Atomic # 7 Polarization: -99.61 SS G_CDS: -5.09 Total: -104.70 kcal
Atomic # 8 Polarization: -24.31 SS G_CDS: -0.05 Total: -24.36 kcal
Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal
Total: -71.86 1.61 -70.25 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000560502839.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.881 kcal
(2) G-P(sol) polarization free energy of solvation -71.858 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.023 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.251 kcal
(6) G-S(sol) free energy of system = (1) + (5) 48.630 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds