Wall clock time and date at job start Tue Mar 31 2020 11:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46910 * 2 1 4 4 C 1.52994 * 109.47327 * 240.00087 * 2 1 3 5 5 C 1.47208 * 109.47213 * 59.99818 * 4 2 1 6 6 N 3.43555 * 83.99658 * 278.55483 * 2 1 3 7 7 C 1.52996 * 109.47110 * 119.99791 * 2 1 3 8 8 S 1.81401 * 109.47352 * 300.00278 * 7 2 1 9 9 O 1.42098 * 110.54290 * 68.37493 * 8 7 2 10 10 O 1.42104 * 110.54059 * 291.62224 * 8 7 2 11 11 N 1.65601 * 104.44760 * 180.02562 * 8 7 2 12 12 C 1.46995 * 120.61107 * 269.99369 * 11 8 7 13 13 C 1.53196 * 108.73708 * 126.41334 * 12 11 8 14 14 C 1.53039 * 109.33748 * 54.62190 * 13 12 11 15 15 C 1.53042 * 109.54198 * 298.62051 * 14 13 12 16 16 H 1.08998 * 109.49465 * 301.41768 * 15 14 13 17 17 C 1.50690 * 109.49895 * 181.35003 * 15 14 13 18 18 H 1.08000 * 119.99800 * 239.99908 * 17 15 14 19 19 C 1.37874 * 120.00137 * 59.99827 * 17 15 14 20 20 N 1.31508 * 120.00121 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 119.99974 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47307 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47139 * 120.00342 * 21 19 17 24 24 H 1.48502 * 109.47443 * 239.99840 * 21 19 17 25 25 C 1.46925 * 120.63296 * 90.00235 * 11 8 7 26 26 H 1.09001 * 109.46890 * 300.00084 * 1 2 3 27 27 H 1.09002 * 109.46850 * 59.99937 * 1 2 3 28 28 H 1.08992 * 109.46981 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47019 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47416 * 299.99717 * 3 2 1 31 31 H 1.09001 * 109.47413 * 60.00236 * 3 2 1 32 32 H 1.08998 * 109.47574 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.47093 * 300.00006 * 4 2 1 34 34 H 1.09004 * 109.47283 * 180.02562 * 7 2 1 35 35 H 1.09002 * 109.46895 * 60.00247 * 7 2 1 36 36 H 1.09001 * 109.63157 * 6.62745 * 12 11 8 37 37 H 1.08996 * 109.58534 * 246.17245 * 12 11 8 38 38 H 1.09002 * 109.49815 * 294.65503 * 13 12 11 39 39 H 1.09000 * 109.49595 * 174.58900 * 13 12 11 40 40 H 1.09006 * 109.46255 * 58.64043 * 14 13 12 41 41 H 1.08998 * 109.45791 * 178.60886 * 14 13 12 42 42 H 0.97002 * 120.00115 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.58683 * 113.82079 * 25 11 8 44 44 H 1.08994 * 109.70376 * 353.45932 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5494 -0.0273 -2.4512 6 7 1.1707 0.5083 -3.3787 7 6 2.0400 -0.7212 1.2492 8 16 1.4353 0.1339 2.7304 9 8 0.0280 -0.0183 2.8544 10 8 2.0480 1.4101 2.8544 11 7 2.0542 -0.7400 3.9936 12 6 1.3012 -1.8657 4.5649 13 6 2.1983 -3.1076 4.5665 14 6 3.5041 -2.7885 5.2980 15 6 4.2392 -1.6634 4.5659 16 1 4.4400 -1.9680 3.5388 17 6 5.5405 -1.3726 5.2680 18 1 5.7285 -0.3884 5.6710 19 6 6.4911 -2.3630 5.3958 20 7 6.2624 -3.5613 4.9046 21 14 8.1045 -2.0023 6.2654 22 1 8.1153 -0.5896 6.7228 23 1 8.2471 -2.9028 7.4377 24 1 9.2337 -2.2282 5.3277 25 6 3.3659 -0.4047 4.5644 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 -0.7208 -1.2495 33 1 1.6767 -1.7489 -1.2492 34 1 3.1301 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2492 36 1 0.4139 -2.0568 3.9614 37 1 1.0062 -1.6269 5.5867 38 1 2.4184 -3.3987 3.5394 39 1 1.6869 -3.9251 5.0747 40 1 3.2817 -2.4737 6.3176 41 1 4.1336 -3.6780 5.3218 42 1 6.9314 -4.2580 4.9943 43 1 3.2391 -0.0467 5.5861 44 1 3.8416 0.3693 3.9623 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594807027.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:59 Heat of formation + Delta-G solvation = -62.185258 kcal Electronic energy + Delta-G solvation = -25573.522952 eV Core-core repulsion = 22038.547675 eV Total energy + Delta-G solvation = -3534.975278 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.77150 -37.79142 -36.99151 -36.08986 -35.66833 -33.38310 -31.17909 -30.17381 -29.13317 -27.91454 -27.56905 -25.18307 -23.65462 -21.74542 -20.53335 -19.40943 -18.41342 -17.64357 -17.33302 -16.30849 -16.00679 -15.88724 -15.29399 -15.21752 -14.67925 -14.15980 -13.91793 -13.83432 -13.57906 -13.26917 -12.95465 -12.92311 -12.86068 -12.82224 -12.64342 -12.22724 -12.15081 -11.87006 -11.77540 -11.72343 -11.41983 -11.32975 -11.23118 -11.09191 -11.05287 -10.91143 -10.76149 -10.45534 -10.31054 -10.01049 -9.84900 -9.44203 -8.91925 -8.51644 -8.22015 -6.09783 -4.16957 0.44152 2.53010 2.58720 2.89529 3.23684 3.32918 3.37023 3.62505 4.02520 4.18027 4.31949 4.35753 4.47848 4.49037 4.84554 5.04100 5.13322 5.21424 5.28881 5.33442 5.40359 5.43054 5.61170 5.62106 5.64316 5.74258 5.79058 5.93932 6.01404 6.06907 6.20485 6.25951 6.41505 6.54179 6.58976 6.79918 6.94798 7.12148 7.34736 7.35612 7.62842 7.83015 8.00933 8.31504 8.87069 9.48938 10.95375 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.016749 B = 0.004112 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.387155 B = 6808.303962 C = 7466.897420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.041 4.041 3 C -0.182 4.182 4 C -0.015 4.015 5 C 0.213 3.787 6 N -0.440 5.440 7 C -0.630 4.630 8 S 2.609 3.391 9 O -0.963 6.963 10 O -0.954 6.954 11 N -0.994 5.994 12 C 0.124 3.876 13 C -0.136 4.136 14 C -0.111 4.111 15 C 0.038 3.962 16 H 0.029 0.971 17 C -0.516 4.516 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.888 5.888 21 Si 0.891 3.109 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.125 3.875 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.036 0.964 41 H 0.094 0.906 42 H 0.260 0.740 43 H 0.062 0.938 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.956 1.404 -6.972 11.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.043 4.043 3 C -0.240 4.240 4 C -0.056 4.056 5 C -0.105 4.105 6 N -0.117 5.117 7 C -0.757 4.757 8 S 2.703 3.297 9 O -0.953 6.953 10 O -0.944 6.944 11 N -0.832 5.832 12 C -0.001 4.001 13 C -0.175 4.175 14 C -0.149 4.149 15 C 0.018 3.982 16 H 0.047 0.953 17 C -0.555 4.555 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 C 0.001 3.999 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.162 0.838 35 H 0.156 0.844 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.113 0.887 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.983 2.809 -8.298 13.282 hybrid contribution 1.565 -0.832 0.531 1.850 sum -8.418 1.977 -7.767 11.623 Atomic orbital electron populations 1.22459 0.92906 1.04218 1.04232 1.20175 0.96528 0.95701 0.91927 1.22469 1.03328 0.93967 1.04190 1.19453 1.02825 0.98725 0.84550 1.29095 0.93343 0.93709 0.94310 1.81231 1.09344 1.09432 1.11735 1.30855 1.13939 1.14106 1.16840 1.04990 0.74418 0.75097 0.75242 1.93547 1.29402 1.86877 1.85477 1.93575 1.78130 1.37506 1.85205 1.57636 1.31106 1.46863 1.47624 1.21430 0.93320 0.86221 0.99129 1.22033 0.98466 0.95619 1.01369 1.21589 0.93256 1.03098 0.96979 1.19005 0.92306 0.89842 0.97007 0.95264 1.21151 1.00002 0.97441 1.36926 0.92295 1.24921 0.98332 0.95056 0.95398 1.69868 1.34642 1.02455 1.45738 0.86557 0.83652 0.78514 0.79408 1.19682 1.21068 1.21058 1.21832 0.79976 0.99807 0.98288 0.90157 0.91466 0.90689 0.90401 0.91482 0.90132 0.86516 0.86712 0.83825 0.84415 0.90586 0.91560 0.92524 0.92531 0.94519 0.88725 0.93013 0.91964 0.90498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 7.75 37.16 0.29 -1.50 16 2 C -0.04 -0.38 0.57 -154.51 -0.09 -0.47 16 3 C -0.18 -1.92 7.74 37.16 0.29 -1.64 16 4 C -0.01 -0.11 4.79 -29.52 -0.14 -0.25 16 5 C 0.21 2.13 12.89 -20.76 -0.27 1.87 16 6 N -0.44 -5.65 18.54 42.15 0.78 -4.87 16 7 C -0.63 -6.42 5.18 37.16 0.19 -6.23 16 8 S 2.61 37.43 4.45 -107.50 -0.48 36.95 16 9 O -0.96 -15.03 14.35 -57.54 -0.83 -15.86 16 10 O -0.95 -16.12 14.35 -57.54 -0.83 -16.94 16 11 N -0.99 -15.86 3.22 -113.47 -0.37 -16.22 16 12 C 0.12 1.84 6.32 -3.67 -0.02 1.82 16 13 C -0.14 -2.18 6.08 -26.61 -0.16 -2.34 16 14 C -0.11 -2.29 4.96 -26.69 -0.13 -2.42 16 15 C 0.04 0.83 2.25 -91.65 -0.21 0.63 16 16 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 17 C -0.52 -12.85 8.57 -34.45 -0.30 -13.15 16 18 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 20 N -0.89 -23.21 11.31 55.43 0.63 -22.59 16 21 Si 0.89 19.94 29.54 -169.99 -5.02 14.92 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.12 2.34 5.54 -3.71 -0.02 2.32 16 26 H 0.08 0.92 5.46 -51.93 -0.28 0.64 16 27 H 0.07 0.64 7.23 -51.93 -0.38 0.26 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.67 7.23 -51.93 -0.38 0.29 16 31 H 0.08 0.98 5.46 -51.93 -0.28 0.69 16 32 H 0.12 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.14 1.36 8.14 -51.92 -0.42 0.94 16 35 H 0.14 1.11 8.14 -51.92 -0.42 0.68 16 36 H 0.08 0.97 7.10 -51.93 -0.37 0.60 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 2.23 6.04 -51.93 -0.31 1.92 16 42 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.08 1.41 7.10 -51.93 -0.37 1.04 16 LS Contribution 354.37 15.07 5.34 5.34 Total: -1.00 -30.36 354.37 -8.41 -38.77 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.98 Total: 0.31 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -0.66 Total: -19.81 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 1.04 Total: -43.68 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -1.65 Total: -32.80 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 37.43 SS G_CDS: -0.48 Total: 36.95 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.36 -8.41 -38.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594807027.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.418 kcal (2) G-P(sol) polarization free energy of solvation -30.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds