Wall clock time and date at job start Tue Mar 31 2020 11:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46910 * 2 1 4 4 C 1.52994 * 109.47327 * 240.00087 * 2 1 3 5 5 C 1.47208 * 109.47213 * 59.99818 * 4 2 1 6 6 N 3.43555 * 83.99658 * 278.55483 * 2 1 3 7 7 C 1.52996 * 109.47110 * 119.99791 * 2 1 3 8 8 S 1.81401 * 109.47352 * 300.00278 * 7 2 1 9 9 O 1.42098 * 110.54290 * 68.37493 * 8 7 2 10 10 O 1.42104 * 110.54059 * 291.62224 * 8 7 2 11 11 N 1.65601 * 104.44760 * 180.02562 * 8 7 2 12 12 C 1.46995 * 120.61107 * 269.99369 * 11 8 7 13 13 C 1.53196 * 108.73708 * 126.41334 * 12 11 8 14 14 C 1.53039 * 109.33748 * 54.62190 * 13 12 11 15 15 C 1.53042 * 109.54198 * 298.62051 * 14 13 12 16 16 H 1.08998 * 109.49465 * 301.41768 * 15 14 13 17 17 C 1.50690 * 109.49895 * 181.35003 * 15 14 13 18 18 H 1.08000 * 119.99800 * 239.99908 * 17 15 14 19 19 C 1.37874 * 120.00137 * 59.99827 * 17 15 14 20 20 N 1.31508 * 120.00121 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 119.99974 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47307 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47139 * 120.00342 * 21 19 17 24 24 H 1.48502 * 109.47443 * 239.99840 * 21 19 17 25 25 C 1.46925 * 120.63296 * 90.00235 * 11 8 7 26 26 H 1.09001 * 109.46890 * 300.00084 * 1 2 3 27 27 H 1.09002 * 109.46850 * 59.99937 * 1 2 3 28 28 H 1.08992 * 109.46981 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47019 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47416 * 299.99717 * 3 2 1 31 31 H 1.09001 * 109.47413 * 60.00236 * 3 2 1 32 32 H 1.08998 * 109.47574 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.47093 * 300.00006 * 4 2 1 34 34 H 1.09004 * 109.47283 * 180.02562 * 7 2 1 35 35 H 1.09002 * 109.46895 * 60.00247 * 7 2 1 36 36 H 1.09001 * 109.63157 * 6.62745 * 12 11 8 37 37 H 1.08996 * 109.58534 * 246.17245 * 12 11 8 38 38 H 1.09002 * 109.49815 * 294.65503 * 13 12 11 39 39 H 1.09000 * 109.49595 * 174.58900 * 13 12 11 40 40 H 1.09006 * 109.46255 * 58.64043 * 14 13 12 41 41 H 1.08998 * 109.45791 * 178.60886 * 14 13 12 42 42 H 0.97002 * 120.00115 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.58683 * 113.82079 * 25 11 8 44 44 H 1.08994 * 109.70376 * 353.45932 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5494 -0.0273 -2.4512 6 7 1.1707 0.5083 -3.3787 7 6 2.0400 -0.7212 1.2492 8 16 1.4353 0.1339 2.7304 9 8 0.0280 -0.0183 2.8544 10 8 2.0480 1.4101 2.8544 11 7 2.0542 -0.7400 3.9936 12 6 1.3012 -1.8657 4.5649 13 6 2.1983 -3.1076 4.5665 14 6 3.5041 -2.7885 5.2980 15 6 4.2392 -1.6634 4.5659 16 1 4.4400 -1.9680 3.5388 17 6 5.5405 -1.3726 5.2680 18 1 5.7285 -0.3884 5.6710 19 6 6.4911 -2.3630 5.3958 20 7 6.2624 -3.5613 4.9046 21 14 8.1045 -2.0023 6.2654 22 1 8.1153 -0.5896 6.7228 23 1 8.2471 -2.9028 7.4377 24 1 9.2337 -2.2282 5.3277 25 6 3.3659 -0.4047 4.5644 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 -0.7208 -1.2495 33 1 1.6767 -1.7489 -1.2492 34 1 3.1301 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2492 36 1 0.4139 -2.0568 3.9614 37 1 1.0062 -1.6269 5.5867 38 1 2.4184 -3.3987 3.5394 39 1 1.6869 -3.9251 5.0747 40 1 3.2817 -2.4737 6.3176 41 1 4.1336 -3.6780 5.3218 42 1 6.9314 -4.2580 4.9943 43 1 3.2391 -0.0467 5.5861 44 1 3.8416 0.3693 3.9623 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594807027.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:58 Heat of formation + Delta-G solvation = -80.829354 kcal Electronic energy + Delta-G solvation = -25574.331421 eV Core-core repulsion = 22038.547675 eV Total energy + Delta-G solvation = -3535.783746 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.53919 -39.20457 -38.17158 -37.06289 -36.70965 -35.11963 -32.61097 -31.77980 -29.83192 -28.73651 -28.35228 -26.95259 -25.06305 -23.22498 -21.51332 -20.72479 -19.62230 -18.83256 -18.14611 -18.03342 -17.12573 -16.92828 -16.56757 -16.07934 -15.99610 -15.35679 -15.01555 -14.78229 -14.74328 -14.68854 -14.32131 -14.26082 -13.93274 -13.79448 -13.60095 -13.52070 -13.08705 -12.96463 -12.86813 -12.77016 -12.60719 -12.57913 -12.48152 -12.36096 -12.30177 -12.15216 -11.80333 -11.77257 -11.71585 -11.58220 -11.29706 -10.89550 -10.67244 -10.33943 -9.64100 -8.01836 -6.13957 -0.64411 1.44557 1.49528 1.58139 1.71031 1.80810 1.85551 2.49774 2.81851 3.07260 3.22383 3.25947 3.56661 3.61439 3.73529 3.89559 4.12214 4.29759 4.35369 4.45603 4.60464 4.61797 4.68787 4.69374 4.74631 4.75997 4.87465 4.90602 4.92942 4.98982 5.02969 5.05861 5.18494 5.25937 5.28371 5.40755 5.48534 5.63847 5.73902 5.82001 6.08497 6.25306 6.49047 6.62618 6.97058 7.53659 9.01148 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.016749 B = 0.004112 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.387155 B = 6808.303962 C = 7466.897420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.038 4.038 3 C -0.190 4.190 4 C -0.012 4.012 5 C 0.237 3.763 6 N -0.497 5.497 7 C -0.607 4.607 8 S 2.603 3.397 9 O -0.979 6.979 10 O -0.989 6.989 11 N -1.000 6.000 12 C 0.121 3.879 13 C -0.127 4.127 14 C -0.108 4.108 15 C 0.038 3.962 16 H 0.019 0.981 17 C -0.534 4.534 18 H 0.050 0.950 19 C 0.023 3.977 20 N -0.908 5.908 21 Si 0.942 3.058 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.282 1.282 25 C 0.137 3.863 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.143 0.857 33 H 0.151 0.849 34 H 0.158 0.842 35 H 0.173 0.827 36 H 0.105 0.895 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.023 0.977 41 H 0.063 0.937 42 H 0.259 0.741 43 H 0.049 0.951 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.257 0.102 -8.040 12.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.041 4.041 3 C -0.247 4.247 4 C -0.053 4.053 5 C -0.079 4.079 6 N -0.175 5.175 7 C -0.739 4.739 8 S 2.702 3.298 9 O -0.969 6.969 10 O -0.979 6.979 11 N -0.837 5.837 12 C -0.004 4.004 13 C -0.166 4.166 14 C -0.146 4.146 15 C 0.018 3.982 16 H 0.037 0.963 17 C -0.573 4.573 18 H 0.069 0.931 19 C -0.176 4.176 20 N -0.548 5.548 21 Si 0.769 3.231 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.208 1.208 25 C 0.012 3.988 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.160 0.840 33 H 0.169 0.831 34 H 0.177 0.823 35 H 0.191 0.809 36 H 0.123 0.877 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.041 0.959 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.310 1.534 -9.314 13.978 hybrid contribution 1.641 -0.403 0.848 1.891 sum -8.668 1.131 -8.467 12.170 Atomic orbital electron populations 1.22525 0.93250 1.05370 1.03243 1.20158 0.96277 0.95006 0.92639 1.22543 1.04001 0.94971 1.03225 1.19705 1.04352 0.99591 0.81603 1.29571 0.91840 0.92450 0.94073 1.81264 1.11305 1.11217 1.13705 1.30640 1.14781 1.15066 1.13432 1.05035 0.73944 0.74684 0.76158 1.93528 1.30237 1.86965 1.86187 1.93537 1.78433 1.39833 1.86118 1.57594 1.29791 1.47277 1.49030 1.21552 0.93775 0.85178 0.99860 1.21935 0.96231 0.96881 1.01517 1.21425 0.95177 1.01127 0.96882 1.18950 0.91811 0.91494 0.95948 0.96282 1.21533 1.01728 0.97078 1.36969 0.93128 1.25510 1.00825 0.95090 0.96179 1.69970 1.35270 1.02879 1.46634 0.85757 0.80758 0.78165 0.78437 1.19620 1.21106 1.20775 1.21445 0.81103 0.98303 0.97990 0.92136 0.91567 0.88492 0.89470 0.91417 0.92203 0.83970 0.83129 0.82347 0.80913 0.87708 0.91765 0.91349 0.90513 0.95862 0.91840 0.93121 0.93223 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.19 7.75 71.98 0.56 -2.63 16 2 C -0.04 -0.59 0.57 -52.18 -0.03 -0.62 16 3 C -0.19 -3.72 7.74 71.98 0.56 -3.16 16 4 C -0.01 -0.12 4.79 28.79 0.14 0.02 16 5 C 0.24 4.11 12.89 89.44 1.15 5.26 16 6 N -0.50 -12.10 18.54 20.01 0.37 -11.73 16 7 C -0.61 -10.03 5.18 71.98 0.37 -9.66 16 8 S 2.60 70.46 4.45 -56.49 -0.25 70.21 16 9 O -0.98 -28.92 14.35 -127.65 -1.83 -30.75 16 10 O -0.99 -33.27 14.35 -127.65 -1.83 -35.10 16 11 N -1.00 -30.45 3.22 -512.90 -1.65 -32.10 16 12 C 0.12 3.31 6.32 86.35 0.55 3.86 16 13 C -0.13 -3.77 6.08 30.67 0.19 -3.58 16 14 C -0.11 -4.41 4.96 30.62 0.15 -4.26 16 15 C 0.04 1.64 2.25 -11.46 -0.03 1.61 16 16 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 17 C -0.53 -26.83 8.57 25.60 0.22 -26.61 16 18 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 19 C 0.02 1.19 5.30 84.65 0.45 1.64 16 20 N -0.91 -47.54 11.31 21.45 0.24 -47.30 16 21 Si 0.94 40.96 29.54 68.60 2.03 42.99 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 25 C 0.14 5.10 5.54 86.36 0.48 5.58 16 26 H 0.06 1.30 5.46 -2.39 -0.01 1.28 16 27 H 0.07 1.14 7.23 -2.39 -0.02 1.12 16 28 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.07 1.29 7.23 -2.39 -0.02 1.27 16 31 H 0.06 1.44 5.46 -2.39 -0.01 1.42 16 32 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.15 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.16 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.17 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.10 2.29 7.10 -2.39 -0.02 2.28 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.06 3.00 6.04 -2.39 -0.01 2.99 16 42 H 0.26 13.05 8.31 -92.71 -0.77 12.28 16 43 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.08 2.81 7.10 -2.39 -0.02 2.80 16 Total: -1.00 -67.78 354.37 2.81 -64.97 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.99 Total: 11.35 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 4.75 Total: -32.55 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -1.04 Total: -91.12 kcal Atomic # 8 Polarization: -62.19 SS G_CDS: -3.66 Total: -65.85 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Atomic # 16 Polarization: 70.46 SS G_CDS: -0.25 Total: 70.21 kcal Total: -67.78 2.81 -64.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594807027.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.859 kcal (2) G-P(sol) polarization free energy of solvation -67.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds