Wall clock time and date at job start Tue Mar 31 2020 10:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30042 * 126.17739 * 2 1 4 4 O 1.21287 * 110.51329 * 179.76127 * 3 2 1 5 5 C 1.34242 * 109.68604 * 0.42983 * 4 3 2 6 6 C 1.47524 * 126.69137 * 179.84172 * 5 4 3 7 7 C 1.39886 * 120.60601 * 180.40386 * 6 5 4 8 8 C 1.38409 * 118.36853 * 179.74491 * 7 6 5 9 9 C 1.38307 * 119.49571 * 0.25463 * 8 7 6 10 10 N 1.31900 * 121.20625 * 359.97438 * 9 8 7 11 11 C 1.32367 * 121.77094 * 0.02562 * 10 9 8 12 12 N 1.38458 * 119.81692 * 180.02562 * 11 10 9 13 13 C 1.46852 * 111.00310 * 299.73518 * 12 11 10 14 14 C 1.53030 * 109.52263 * 185.83873 * 13 12 11 15 15 C 1.53125 * 109.28225 * 300.81881 * 14 13 12 16 16 C 1.53122 * 109.15754 * 57.65940 * 15 14 13 17 17 H 1.08996 * 109.50359 * 62.28517 * 16 15 14 18 18 C 1.50694 * 109.50298 * 182.40651 * 16 15 14 19 19 H 1.08007 * 120.00160 * 119.79932 * 18 16 15 20 20 C 1.37874 * 119.99999 * 299.80344 * 18 16 15 21 21 N 1.31519 * 120.00244 * 180.02562 * 20 18 16 22 22 Si 1.86796 * 120.00125 * 359.97438 * 20 18 16 23 23 H 1.48500 * 109.47360 * 89.99945 * 22 20 18 24 24 H 1.48501 * 109.47658 * 210.00499 * 22 20 18 25 25 H 1.48504 * 109.47189 * 330.00426 * 22 20 18 26 26 C 1.46854 * 111.00252 * 63.94644 * 12 11 10 27 27 N 1.32254 * 106.61889 * 359.57735 * 5 4 3 28 28 H 1.09000 * 109.47474 * 269.96106 * 1 2 3 29 29 H 1.09010 * 109.46853 * 29.95965 * 1 2 3 30 30 H 1.09000 * 109.47314 * 149.95651 * 1 2 3 31 31 H 1.07999 * 120.81181 * 0.02724 * 7 6 5 32 32 H 1.08008 * 120.24891 * 180.27425 * 8 7 6 33 33 H 1.08006 * 119.39479 * 179.97438 * 9 8 7 34 34 H 1.08999 * 109.46113 * 305.85543 * 13 12 11 35 35 H 1.08997 * 109.45568 * 65.82030 * 13 12 11 36 36 H 1.08999 * 109.50437 * 180.88249 * 14 13 12 37 37 H 1.08996 * 109.54066 * 60.78400 * 14 13 12 38 38 H 1.09002 * 109.52274 * 297.75401 * 15 14 13 39 39 H 1.08996 * 109.52464 * 177.56066 * 15 14 13 40 40 H 0.96993 * 120.00124 * 180.02562 * 21 20 18 41 41 H 1.08998 * 109.45728 * 294.18240 * 26 12 11 42 42 H 1.08998 * 109.45674 * 54.15425 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2747 1.0497 0.0000 4 8 3.4425 0.7222 0.0047 5 6 3.5367 -0.6169 -0.0011 6 6 4.7785 -1.4132 -0.0015 7 6 4.7283 -2.8110 -0.0165 8 6 5.9217 -3.5120 -0.0216 9 6 7.1185 -2.8190 -0.0065 10 7 7.1446 -1.5004 0.0122 11 6 6.0332 -0.7814 0.0179 12 7 6.1077 0.6010 0.0372 13 6 6.8105 1.0736 1.2369 14 6 6.7468 2.6013 1.2984 15 6 7.3959 3.1855 0.0406 16 6 6.6762 2.6400 -1.1959 17 1 5.6342 2.9595 -1.1811 18 6 7.3462 3.1636 -2.4400 19 1 7.7763 2.4750 -3.1524 20 6 7.4104 4.5217 -2.6688 21 7 7.9947 4.9788 -3.7548 22 14 6.6661 5.7126 -1.4371 23 1 7.6900 6.0855 -0.4282 24 1 6.2023 6.9324 -2.1458 25 1 5.5143 5.0667 -0.7579 26 6 6.7419 1.1110 -1.1852 27 7 2.2990 -1.0831 -0.0007 28 1 -0.3634 -0.0007 1.0276 29 1 -0.3633 0.8904 -0.5133 30 1 -0.3634 -0.8896 -0.5145 31 1 3.7814 -3.3304 -0.0285 32 1 5.9183 -4.5920 -0.0376 33 1 8.0489 -3.3677 -0.0101 34 1 6.3364 0.6542 2.1243 35 1 7.8520 0.7547 1.1967 36 1 7.2820 2.9526 2.1806 37 1 5.7062 2.9209 1.3529 38 1 8.4470 2.8989 0.0064 39 1 7.3141 4.2723 0.0597 40 1 8.0402 5.9342 -3.9156 41 1 7.7838 0.7920 -1.2139 42 1 6.2179 0.7190 -2.0568 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596330718.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:32 Heat of formation + Delta-G solvation = 122.189862 kcal Electronic energy + Delta-G solvation = -26730.877861 eV Core-core repulsion = 23100.746488 eV Total energy + Delta-G solvation = -3630.131373 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.29911 -40.71241 -38.13763 -35.93808 -34.21625 -33.96793 -32.32228 -31.55818 -30.34152 -29.80102 -28.96758 -25.04812 -24.97170 -24.68504 -23.00762 -22.24262 -21.39098 -21.11808 -18.90877 -17.87745 -17.83618 -17.33627 -16.54468 -16.42881 -16.09475 -15.10572 -14.82718 -14.31533 -13.86153 -13.84992 -13.64940 -13.62342 -13.48241 -13.17300 -12.89683 -12.82916 -12.54559 -12.33999 -12.21334 -12.06595 -11.60087 -11.18360 -11.04207 -10.97307 -10.59173 -10.55991 -10.15277 -10.07600 -9.80705 -9.76120 -9.66694 -9.14229 -8.97429 -8.73255 -8.48702 -8.27921 -6.04092 -4.03446 0.27202 0.99076 1.68765 2.37215 2.84303 3.31715 3.43731 3.48142 3.55979 3.57532 3.76142 4.10337 4.39693 4.46037 4.66296 4.83572 4.86549 5.03567 5.18590 5.25819 5.27531 5.36008 5.41460 5.49272 5.54476 5.74733 5.77086 5.82082 5.94907 5.95789 6.03050 6.11811 6.20400 6.24452 6.31590 6.49641 6.58866 6.79515 6.81348 7.15536 7.22447 7.52105 7.64562 7.74954 7.82896 8.31917 8.53721 8.98603 9.58451 11.09032 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.012302 B = 0.005315 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.553729 B = 5266.895734 C = 6646.618170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.157 3.843 3 N -0.387 5.387 4 O 0.136 5.864 5 C 0.242 3.758 6 C -0.068 4.068 7 C -0.017 4.017 8 C -0.190 4.190 9 C 0.138 3.862 10 N -0.506 5.506 11 C 0.353 3.647 12 N -0.498 5.498 13 C 0.073 3.927 14 C -0.119 4.119 15 C -0.122 4.122 16 C 0.022 3.978 17 H 0.039 0.961 18 C -0.513 4.513 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.902 5.902 22 Si 0.884 3.116 23 H -0.279 1.279 24 H -0.299 1.299 25 H -0.261 1.261 26 C 0.087 3.913 27 N -0.488 5.488 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.161 0.839 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.263 0.737 41 H 0.047 0.953 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.651 -16.730 11.098 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.116 4.116 3 N -0.090 5.090 4 O 0.072 5.928 5 C 0.025 3.975 6 C -0.074 4.074 7 C -0.045 4.045 8 C -0.209 4.209 9 C -0.021 4.021 10 N -0.217 5.217 11 C 0.122 3.878 12 N -0.222 5.222 13 C -0.054 4.054 14 C -0.157 4.157 15 C -0.160 4.160 16 C 0.002 3.998 17 H 0.057 0.943 18 C -0.551 4.551 19 H 0.091 0.909 20 C -0.129 4.129 21 N -0.540 5.540 22 Si 0.715 3.285 23 H -0.206 1.206 24 H -0.226 1.226 25 H -0.186 1.186 26 C -0.038 4.038 27 N -0.223 5.223 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.167 0.833 32 H 0.162 0.838 33 H 0.178 0.822 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.988 -15.376 11.010 20.939 hybrid contribution -0.120 -0.021 0.481 0.496 sum -9.108 -15.398 11.491 21.262 Atomic orbital electron populations 1.20083 0.83161 1.04485 1.03960 1.25718 1.00395 0.83735 1.01770 1.74697 0.89882 1.24093 1.20357 1.85703 1.20578 1.23049 1.63470 1.25664 0.93240 0.82303 0.96319 1.17955 0.87408 0.92009 1.10042 1.21604 0.99965 0.91157 0.91779 1.22052 0.92611 1.01798 1.04484 1.22904 0.98322 0.89591 0.91308 1.68086 1.31366 1.08506 1.13774 1.20163 0.86999 0.91280 0.89331 1.60195 1.54908 1.01188 1.05946 1.21992 0.96777 0.96458 0.90137 1.21669 1.01730 0.93463 0.98859 1.22033 1.00077 0.99197 0.94680 1.19177 0.97181 0.89638 0.93771 0.94322 1.20932 1.37002 0.92585 1.04592 0.90917 1.24947 0.94568 0.98218 0.95161 1.69895 1.43946 1.13940 1.26215 0.86874 0.80356 0.80284 0.81014 1.20628 1.22632 1.18568 1.22173 0.96543 0.97839 0.87242 1.72059 0.98991 1.29330 1.21912 0.89643 0.89562 0.89311 0.83266 0.83763 0.82158 0.92067 0.93165 0.92253 0.91532 0.92203 0.93336 0.92692 0.93429 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.56 10.51 36.01 0.38 -0.18 16 2 C 0.16 2.28 8.20 -156.58 -1.28 1.00 16 3 N -0.39 -6.74 12.15 31.21 0.38 -6.36 16 4 O 0.14 2.45 9.91 16.54 0.16 2.62 16 5 C 0.24 3.83 7.96 -13.91 -0.11 3.72 16 6 C -0.07 -0.96 5.91 -104.65 -0.62 -1.58 16 7 C -0.02 -0.19 9.83 -38.90 -0.38 -0.57 16 8 C -0.19 -1.63 10.09 -39.49 -0.40 -2.03 16 9 C 0.14 1.43 11.16 -17.50 -0.20 1.23 16 10 N -0.51 -7.30 9.71 -12.18 -0.12 -7.42 16 11 C 0.35 5.54 5.30 -155.06 -0.82 4.72 16 12 N -0.50 -8.87 2.96 -172.97 -0.51 -9.38 16 13 C 0.07 1.20 5.24 -3.83 -0.02 1.18 16 14 C -0.12 -2.11 6.09 -26.65 -0.16 -2.27 16 15 C -0.12 -2.64 4.74 -26.60 -0.13 -2.76 16 16 C 0.02 0.51 1.85 -91.69 -0.17 0.34 16 17 H 0.04 0.98 7.19 -51.93 -0.37 0.60 16 18 C -0.51 -14.41 9.14 -34.44 -0.31 -14.72 16 19 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 20 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 21 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 22 Si 0.88 22.34 24.36 -169.99 -4.14 18.20 16 23 H -0.28 -6.82 6.89 56.52 0.39 -6.43 16 24 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 25 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 26 C 0.09 1.80 4.50 -3.83 -0.02 1.78 16 27 N -0.49 -7.26 11.33 -10.19 -0.12 -7.38 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.15 1.33 7.95 -52.49 -0.42 0.92 16 32 H 0.14 0.73 8.06 -52.48 -0.42 0.30 16 33 H 0.16 1.14 8.06 -52.48 -0.42 0.71 16 34 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.05 0.83 8.00 -51.93 -0.42 0.42 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.05 1.11 3.37 -51.93 -0.17 0.94 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.05 1.01 8.05 -51.93 -0.42 0.59 16 42 H 0.06 1.38 8.10 -51.93 -0.42 0.96 16 LS Contribution 342.91 15.07 5.17 5.17 Total: -1.00 -33.00 342.91 -8.36 -41.36 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.62 Total: -1.66 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -4.34 Total: -8.13 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.41 Total: -57.56 kcal Atomic # 8 Polarization: 2.45 SS G_CDS: 0.16 Total: 2.62 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.14 Total: 18.20 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.00 -8.36 -41.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330718.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.552 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds