Wall clock time and date at job start Tue Mar 31 2020 10:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30042 * 126.17739 * 2 1 4 4 O 1.21287 * 110.51329 * 179.76127 * 3 2 1 5 5 C 1.34242 * 109.68604 * 0.42983 * 4 3 2 6 6 C 1.47524 * 126.69137 * 179.84172 * 5 4 3 7 7 C 1.39886 * 120.60601 * 180.40386 * 6 5 4 8 8 C 1.38409 * 118.36853 * 179.74491 * 7 6 5 9 9 C 1.38307 * 119.49571 * 0.25463 * 8 7 6 10 10 N 1.31900 * 121.20625 * 359.97438 * 9 8 7 11 11 C 1.32367 * 121.77094 * 0.02562 * 10 9 8 12 12 N 1.38458 * 119.81692 * 180.02562 * 11 10 9 13 13 C 1.46852 * 111.00310 * 299.73518 * 12 11 10 14 14 C 1.53030 * 109.52263 * 185.83873 * 13 12 11 15 15 C 1.53125 * 109.28225 * 300.81881 * 14 13 12 16 16 C 1.53122 * 109.15754 * 57.65940 * 15 14 13 17 17 H 1.08996 * 109.50359 * 62.28517 * 16 15 14 18 18 C 1.50694 * 109.50298 * 182.40651 * 16 15 14 19 19 H 1.08007 * 120.00160 * 119.79932 * 18 16 15 20 20 C 1.37874 * 119.99999 * 299.80344 * 18 16 15 21 21 N 1.31519 * 120.00244 * 180.02562 * 20 18 16 22 22 Si 1.86796 * 120.00125 * 359.97438 * 20 18 16 23 23 H 1.48500 * 109.47360 * 89.99945 * 22 20 18 24 24 H 1.48501 * 109.47658 * 210.00499 * 22 20 18 25 25 H 1.48504 * 109.47189 * 330.00426 * 22 20 18 26 26 C 1.46854 * 111.00252 * 63.94644 * 12 11 10 27 27 N 1.32254 * 106.61889 * 359.57735 * 5 4 3 28 28 H 1.09000 * 109.47474 * 269.96106 * 1 2 3 29 29 H 1.09010 * 109.46853 * 29.95965 * 1 2 3 30 30 H 1.09000 * 109.47314 * 149.95651 * 1 2 3 31 31 H 1.07999 * 120.81181 * 0.02724 * 7 6 5 32 32 H 1.08008 * 120.24891 * 180.27425 * 8 7 6 33 33 H 1.08006 * 119.39479 * 179.97438 * 9 8 7 34 34 H 1.08999 * 109.46113 * 305.85543 * 13 12 11 35 35 H 1.08997 * 109.45568 * 65.82030 * 13 12 11 36 36 H 1.08999 * 109.50437 * 180.88249 * 14 13 12 37 37 H 1.08996 * 109.54066 * 60.78400 * 14 13 12 38 38 H 1.09002 * 109.52274 * 297.75401 * 15 14 13 39 39 H 1.08996 * 109.52464 * 177.56066 * 15 14 13 40 40 H 0.96993 * 120.00124 * 180.02562 * 21 20 18 41 41 H 1.08998 * 109.45728 * 294.18240 * 26 12 11 42 42 H 1.08998 * 109.45674 * 54.15425 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2747 1.0497 0.0000 4 8 3.4425 0.7222 0.0047 5 6 3.5367 -0.6169 -0.0011 6 6 4.7785 -1.4132 -0.0015 7 6 4.7283 -2.8110 -0.0165 8 6 5.9217 -3.5120 -0.0216 9 6 7.1185 -2.8190 -0.0065 10 7 7.1446 -1.5004 0.0122 11 6 6.0332 -0.7814 0.0179 12 7 6.1077 0.6010 0.0372 13 6 6.8105 1.0736 1.2369 14 6 6.7468 2.6013 1.2984 15 6 7.3959 3.1855 0.0406 16 6 6.6762 2.6400 -1.1959 17 1 5.6342 2.9595 -1.1811 18 6 7.3462 3.1636 -2.4400 19 1 7.7763 2.4750 -3.1524 20 6 7.4104 4.5217 -2.6688 21 7 7.9947 4.9788 -3.7548 22 14 6.6661 5.7126 -1.4371 23 1 7.6900 6.0855 -0.4282 24 1 6.2023 6.9324 -2.1458 25 1 5.5143 5.0667 -0.7579 26 6 6.7419 1.1110 -1.1852 27 7 2.2990 -1.0831 -0.0007 28 1 -0.3634 -0.0007 1.0276 29 1 -0.3633 0.8904 -0.5133 30 1 -0.3634 -0.8896 -0.5145 31 1 3.7814 -3.3304 -0.0285 32 1 5.9183 -4.5920 -0.0376 33 1 8.0489 -3.3677 -0.0101 34 1 6.3364 0.6542 2.1243 35 1 7.8520 0.7547 1.1967 36 1 7.2820 2.9526 2.1806 37 1 5.7062 2.9209 1.3529 38 1 8.4470 2.8989 0.0064 39 1 7.3141 4.2723 0.0597 40 1 8.0402 5.9342 -3.9156 41 1 7.7838 0.7920 -1.2139 42 1 6.2179 0.7190 -2.0568 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596330718.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:32 Heat of formation + Delta-G solvation = 99.252925 kcal Electronic energy + Delta-G solvation = -26731.872481 eV Core-core repulsion = 23100.746488 eV Total energy + Delta-G solvation = -3631.125993 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.45319 -41.78491 -39.52101 -37.05488 -35.79927 -35.05544 -34.12169 -32.62909 -32.11298 -30.88793 -29.92337 -26.98803 -26.07971 -25.95769 -24.10458 -23.49149 -22.96194 -22.24487 -20.56646 -19.15057 -19.05837 -18.77346 -18.11169 -17.46113 -17.20990 -16.68089 -16.20093 -15.73007 -15.43207 -14.93257 -14.85911 -14.75321 -14.63722 -14.43657 -14.40072 -14.01716 -13.83525 -13.75841 -13.31411 -13.15307 -12.96065 -12.82321 -12.66867 -12.44079 -12.11330 -12.00092 -11.82315 -11.60249 -11.52398 -11.14388 -10.98904 -10.76954 -10.65532 -10.60839 -9.79728 -9.63658 -8.31929 -6.35313 -0.75163 0.09527 0.60508 1.27866 1.29405 1.35640 1.46672 1.76105 2.31563 2.48996 2.57876 2.65404 3.03993 3.10780 3.47027 3.83975 3.86972 3.92136 3.98827 4.06463 4.13595 4.24347 4.40510 4.41002 4.53237 4.54246 4.59325 4.67798 4.68694 4.76427 4.85336 4.86953 4.93007 5.00077 5.06945 5.09169 5.11716 5.17279 5.36041 5.46323 5.58470 5.68178 5.90596 6.24117 6.29231 6.70295 6.81500 7.15540 7.30104 8.84895 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.012302 B = 0.005315 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.553729 B = 5266.895734 C = 6646.618170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.163 3.837 3 N -0.423 5.423 4 O 0.099 5.901 5 C 0.239 3.761 6 C -0.085 4.085 7 C -0.014 4.014 8 C -0.160 4.160 9 C 0.135 3.865 10 N -0.533 5.533 11 C 0.325 3.675 12 N -0.502 5.502 13 C 0.076 3.924 14 C -0.112 4.112 15 C -0.120 4.120 16 C 0.024 3.976 17 H 0.021 0.979 18 C -0.517 4.517 19 H 0.033 0.967 20 C 0.018 3.982 21 N -0.948 5.948 22 Si 0.946 3.054 23 H -0.261 1.261 24 H -0.299 1.299 25 H -0.253 1.253 26 C 0.107 3.893 27 N -0.489 5.489 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.169 0.831 32 H 0.193 0.807 33 H 0.196 0.804 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.037 0.963 40 H 0.266 0.734 41 H 0.035 0.965 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.746 -19.373 13.572 25.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.110 4.110 3 N -0.133 5.133 4 O 0.042 5.958 5 C 0.022 3.978 6 C -0.091 4.091 7 C -0.041 4.041 8 C -0.179 4.179 9 C -0.024 4.024 10 N -0.245 5.245 11 C 0.095 3.905 12 N -0.226 5.226 13 C -0.050 4.050 14 C -0.150 4.150 15 C -0.157 4.157 16 C 0.005 3.995 17 H 0.039 0.961 18 C -0.556 4.556 19 H 0.051 0.949 20 C -0.179 4.179 21 N -0.588 5.588 22 Si 0.773 3.227 23 H -0.186 1.186 24 H -0.227 1.227 25 H -0.177 1.177 26 C -0.019 4.019 27 N -0.225 5.225 28 H 0.125 0.875 29 H 0.111 0.889 30 H 0.126 0.874 31 H 0.187 0.813 32 H 0.211 0.789 33 H 0.213 0.787 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.053 0.947 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.048 -18.053 13.506 24.684 hybrid contribution 0.237 0.537 -0.365 0.691 sum -9.811 -17.516 13.142 23.995 Atomic orbital electron populations 1.20360 0.79839 1.05761 1.05706 1.26632 1.02187 0.83011 0.99203 1.74689 0.90064 1.25556 1.22955 1.85651 1.21152 1.24170 1.64783 1.26166 0.94276 0.81903 0.95407 1.18153 0.86145 0.93419 1.11415 1.21947 1.01841 0.89559 0.90780 1.22553 0.90807 1.03913 1.00608 1.23602 1.00690 0.88310 0.89775 1.68007 1.31074 1.10678 1.14775 1.20005 0.88051 0.90237 0.92248 1.59997 1.54435 1.03415 1.04732 1.21994 0.96903 0.95584 0.90499 1.21623 1.01273 0.94222 0.97838 1.21899 0.99876 0.98489 0.95461 1.19035 0.95647 0.91856 0.92991 0.96062 1.21228 1.36438 0.92247 1.05649 0.94852 1.25755 0.95061 1.00083 0.96975 1.70034 1.45927 1.14492 1.28378 0.85876 0.80137 0.77702 0.78968 1.18641 1.22696 1.17736 1.21684 0.95765 0.95752 0.88690 1.72088 0.98643 1.29292 1.22473 0.87501 0.88887 0.87372 0.81303 0.78946 0.78702 0.89878 0.93293 0.89040 0.92115 0.92565 0.94438 0.92502 0.94677 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.00 10.51 71.24 0.75 -0.25 16 2 C 0.16 4.61 8.20 138.54 1.14 5.75 16 3 N -0.42 -14.91 12.15 -58.47 -0.71 -15.62 16 4 O 0.10 3.67 9.91 69.26 0.69 4.36 16 5 C 0.24 7.54 7.96 87.19 0.69 8.24 16 6 C -0.08 -2.33 5.91 -19.88 -0.12 -2.44 16 7 C -0.01 -0.25 9.83 22.71 0.22 -0.03 16 8 C -0.16 -2.00 10.09 22.33 0.23 -1.78 16 9 C 0.14 2.32 11.16 84.70 0.95 3.27 16 10 N -0.53 -14.66 9.71 -192.45 -1.87 -16.53 16 11 C 0.32 10.04 5.30 133.59 0.71 10.75 16 12 N -0.50 -18.10 2.96 -701.17 -2.07 -20.18 16 13 C 0.08 2.45 5.24 86.32 0.45 2.90 16 14 C -0.11 -3.81 6.09 30.65 0.19 -3.63 16 15 C -0.12 -5.17 4.74 30.68 0.15 -5.02 16 16 C 0.02 1.18 1.85 -11.49 -0.02 1.16 16 17 H 0.02 1.12 7.19 -2.39 -0.02 1.10 16 18 C -0.52 -30.63 9.14 25.60 0.23 -30.39 16 19 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 20 C 0.02 1.11 5.45 84.65 0.46 1.57 16 21 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 22 Si 0.95 47.13 24.36 68.60 1.67 48.80 16 23 H -0.26 -12.14 6.89 99.48 0.69 -11.45 16 24 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 25 H -0.25 -12.18 6.53 99.48 0.65 -11.53 16 26 C 0.11 4.65 4.50 86.32 0.39 5.04 16 27 N -0.49 -14.06 11.33 -302.67 -3.43 -17.49 16 28 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.17 2.38 7.95 -2.91 -0.02 2.36 16 32 H 0.19 0.62 8.06 -2.91 -0.02 0.60 16 33 H 0.20 1.89 8.06 -2.91 -0.02 1.86 16 34 H 0.08 2.32 8.10 -2.39 -0.02 2.30 16 35 H 0.05 1.58 8.00 -2.39 -0.02 1.56 16 36 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.04 1.69 3.37 -2.39 -0.01 1.68 16 40 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 41 H 0.03 1.57 8.05 -2.39 -0.02 1.55 16 42 H 0.05 2.09 8.10 -2.39 -0.02 2.07 16 Total: -1.00 -77.32 342.91 1.94 -75.38 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 0.96 Total: 6.63 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 6.41 Total: -4.87 kcal Atomic # 7 Polarization: -122.52 SS G_CDS: -7.78 Total: -130.30 kcal Atomic # 8 Polarization: 3.67 SS G_CDS: 0.69 Total: 4.36 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.67 Total: 48.80 kcal Total: -77.32 1.94 -75.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330718.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.633 kcal (2) G-P(sol) polarization free energy of solvation -77.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds