Wall clock time and date at job start Tue Mar 31 2020 10:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.38668 * 120.41604 * 90.00491 * 3 2 1 5 5 C 1.38635 * 118.42061 * 180.02562 * 4 3 2 6 6 C 1.38222 * 119.15671 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.61837 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47114 * 125.00176 * 7 6 5 9 9 O 1.21594 * 120.00125 * 0.02562 * 8 7 6 10 10 N 1.32914 * 119.99779 * 180.02562 * 8 7 6 11 11 C 1.33306 * 119.99551 * 180.02562 * 10 8 7 12 12 C 1.40977 * 126.36136 * 0.02562 * 11 10 8 13 13 C 1.35121 * 108.24282 * 179.97438 * 12 11 10 14 14 N 1.36335 * 108.89697 * 359.97438 * 13 12 11 15 15 C 1.46504 * 125.86121 * 180.02562 * 14 13 12 16 16 C 1.50693 * 109.47307 * 84.97384 * 15 14 13 17 17 H 1.08013 * 120.00077 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00362 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99634 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00281 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47120 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47135 * 119.99721 * 20 18 16 23 23 H 1.48503 * 109.47129 * 239.99880 * 20 18 16 24 24 N 1.37286 * 126.35249 * 179.70558 * 11 10 8 25 25 H 0.96996 * 126.34828 * 0.02568 * 24 11 10 26 26 N 1.31852 * 120.76923 * 0.02562 * 6 5 4 27 27 C 1.31890 * 121.72233 * 359.70023 * 26 6 5 28 28 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 30 30 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 31 31 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 32 32 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 33 33 H 1.08000 * 120.79259 * 0.02562 * 4 3 2 34 34 H 1.07995 * 120.42320 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.47277 * 245.00517 * 7 6 5 36 36 H 1.09010 * 109.46844 * 5.00341 * 7 6 5 37 37 H 1.08004 * 125.87687 * 359.93665 * 12 11 10 38 38 H 1.08000 * 125.55111 * 179.97438 * 13 12 11 39 39 H 1.09002 * 109.46533 * 204.97462 * 15 14 13 40 40 H 1.09005 * 109.47117 * 324.97327 * 15 14 13 41 41 H 0.97003 * 120.00127 * 180.02562 * 19 18 16 42 42 H 1.08003 * 119.61630 * 180.31786 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2664 2.0828 1.1958 5 6 2.7277 3.3892 1.1476 6 6 2.9379 3.9842 -0.0822 7 6 3.4386 5.4041 -0.1468 8 6 4.6918 5.4573 -0.9822 9 8 5.1356 4.4396 -1.4781 10 7 5.3119 6.6167 -1.1769 11 6 6.4201 6.6638 -1.9163 12 6 7.0479 5.5732 -2.5518 13 6 8.1400 6.0333 -3.2009 14 7 8.2354 7.3792 -3.0055 15 6 9.2810 8.2526 -3.5441 16 6 8.9101 8.6776 -4.9415 17 1 7.9878 8.3314 -5.3844 18 6 9.7484 9.5076 -5.6551 19 7 10.8716 9.9288 -5.1160 20 14 9.2882 10.0351 -7.3870 21 1 7.9844 9.4294 -7.7589 22 1 9.1805 11.5152 -7.4415 23 1 10.3342 9.5795 -8.3376 24 7 7.1585 7.7845 -2.2053 25 1 6.9707 8.6888 -1.9090 26 7 2.7045 3.3241 -1.1996 27 6 2.2705 2.0787 -1.1916 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0935 1.5922 2.1423 34 1 2.9203 3.9352 2.0592 35 1 2.6749 6.0386 -0.5966 36 1 3.6581 5.7581 0.8605 37 1 6.7137 4.5465 -2.5239 38 1 8.8256 5.4326 -3.7801 39 1 9.3801 9.1340 -2.9105 40 1 10.2282 7.7136 -3.5677 41 1 11.4613 10.5131 -5.6179 42 1 2.0953 1.5685 -2.1272 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597260520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:19 Heat of formation + Delta-G solvation = 90.787786 kcal Electronic energy + Delta-G solvation = -24239.067941 eV Core-core repulsion = 20607.574872 eV Total energy + Delta-G solvation = -3631.493069 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.84155 -40.29337 -38.26547 -35.04268 -34.19374 -32.89405 -32.21960 -31.35959 -31.05185 -30.57282 -27.91432 -26.55831 -23.99383 -23.64914 -23.01856 -21.73031 -21.29078 -20.89465 -19.01185 -17.11896 -16.84352 -16.58156 -16.19366 -15.64404 -15.28529 -15.00455 -14.86368 -14.60347 -14.20607 -14.13220 -13.98848 -13.71525 -13.35413 -12.95368 -12.85884 -12.76315 -12.62860 -12.40876 -12.07646 -11.96981 -11.61166 -11.47890 -11.28341 -11.14774 -11.08892 -10.54378 -10.34981 -9.69360 -9.55863 -9.36238 -9.14836 -9.00874 -8.93609 -8.68220 -8.25276 -6.95312 -6.50813 -4.66921 1.17174 1.39957 1.68574 2.08465 3.03501 3.04450 3.13921 3.19340 3.84809 4.05200 4.26946 4.35020 4.46026 4.64491 4.68348 4.79399 4.81849 4.95951 5.09509 5.12290 5.24906 5.26552 5.28105 5.53708 5.62775 5.69835 5.72858 5.83980 5.88628 5.91939 5.97322 6.01230 6.20917 6.28511 6.48682 6.53278 6.54132 6.76901 6.81592 7.37120 7.47678 7.50931 7.64398 7.97985 8.22863 8.37971 8.44053 9.03943 9.44501 10.51318 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.030699 B = 0.002138 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.868071 B =13095.415818 C =13448.340135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.148 4.148 4 C -0.077 4.077 5 C -0.169 4.169 6 C 0.148 3.852 7 C -0.068 4.068 8 C 0.500 3.500 9 O -0.568 6.568 10 N -0.705 5.705 11 C 0.471 3.529 12 C -0.332 4.332 13 C 0.162 3.838 14 N -0.341 5.341 15 C 0.253 3.747 16 C -0.558 4.558 17 H 0.071 0.929 18 C 0.070 3.930 19 N -0.886 5.886 20 Si 0.910 3.090 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.278 1.278 24 N -0.467 5.467 25 H 0.445 0.555 26 N -0.450 5.450 27 C 0.106 3.894 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.183 0.817 38 H 0.188 0.812 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.271 0.729 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.768 -12.738 10.533 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.150 4.150 4 C -0.103 4.103 5 C -0.189 4.189 6 C 0.010 3.990 7 C -0.108 4.108 8 C 0.284 3.716 9 O -0.449 6.449 10 N -0.470 5.470 11 C 0.221 3.779 12 C -0.364 4.364 13 C 0.016 3.984 14 N -0.126 5.126 15 C 0.137 3.863 16 C -0.596 4.596 17 H 0.089 0.911 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.736 3.264 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.204 1.204 24 N -0.189 5.189 25 H 0.292 0.708 26 N -0.158 5.158 27 C -0.052 4.052 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.200 0.800 38 H 0.205 0.795 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.374 -11.742 9.745 19.646 hybrid contribution -0.060 -0.039 -0.255 0.265 sum -12.434 -11.782 9.489 19.582 Atomic orbital electron populations 1.21757 0.94785 1.01633 1.02219 1.20430 0.96017 0.92154 1.02964 1.20852 1.02098 0.97630 0.94457 1.21342 0.96837 0.94250 0.97876 1.21922 1.02160 0.95984 0.98807 1.20889 0.93920 0.95812 0.88353 1.20199 0.97197 0.91518 1.01879 1.20296 0.85907 0.84493 0.80881 1.90555 1.66082 1.39199 1.49046 1.68693 1.13416 1.30639 1.34261 1.19197 0.87702 0.83872 0.87082 1.22463 1.00475 1.02359 1.11092 1.22877 0.97894 0.82602 0.95053 1.48038 1.17023 1.07284 1.40247 1.20085 0.82242 0.89419 0.94561 1.21454 1.07990 1.31748 0.98422 0.91128 1.24959 0.94407 0.94916 0.99255 1.69906 1.10899 1.33341 1.38162 0.86236 0.78949 0.78569 0.82639 1.19355 1.20502 1.20388 1.44566 1.19118 1.09810 1.45399 0.70794 1.67510 1.09010 1.08295 1.30938 1.22619 0.94758 0.90701 0.97167 0.92399 0.92698 0.92473 0.90794 0.91108 0.85348 0.85024 0.87889 0.88283 0.79983 0.79528 0.93005 0.91329 0.91884 0.83370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.08 -0.61 6.09 -27.88 -0.17 -0.78 16 3 C -0.15 -1.63 5.15 -104.48 -0.54 -2.17 16 4 C -0.08 -0.83 9.86 -39.28 -0.39 -1.21 16 5 C -0.17 -2.06 9.71 -39.44 -0.38 -2.44 16 6 C 0.15 2.27 5.76 -82.59 -0.48 1.79 16 7 C -0.07 -1.04 6.18 -29.04 -0.18 -1.21 16 8 C 0.50 9.86 7.64 -11.81 -0.09 9.77 16 9 O -0.57 -12.51 12.24 5.28 0.06 -12.45 16 10 N -0.71 -14.09 10.51 -11.59 -0.12 -14.21 16 11 C 0.47 9.29 8.07 -155.18 -1.25 8.04 16 12 C -0.33 -6.33 9.51 -39.65 -0.38 -6.71 16 13 C 0.16 2.78 11.46 -16.66 -0.19 2.59 16 14 N -0.34 -6.36 3.63 -62.23 -0.23 -6.59 16 15 C 0.25 5.28 6.19 -5.19 -0.03 5.24 16 16 C -0.56 -13.31 9.39 -34.44 -0.32 -13.63 16 17 H 0.07 1.75 7.81 -52.48 -0.41 1.34 16 18 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -22.50 13.29 55.43 0.74 -21.76 16 20 Si 0.91 19.34 29.54 -169.99 -5.02 14.32 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 N -0.47 -8.42 7.37 31.32 0.23 -8.19 16 25 H 0.44 7.04 8.96 -182.56 -1.64 5.40 16 26 N -0.45 -7.50 9.22 -9.47 -0.09 -7.58 16 27 C 0.11 1.42 10.86 -17.55 -0.19 1.23 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 32 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.13 1.26 7.95 -52.49 -0.42 0.84 16 35 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.10 1.25 7.87 -51.92 -0.41 0.85 16 37 H 0.18 3.70 5.77 -52.48 -0.30 3.39 16 38 H 0.19 2.54 8.06 -52.49 -0.42 2.12 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 42 H 0.15 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -30.91 364.24 -10.21 -41.12 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.96 Total: 8.38 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -4.32 Total: 1.47 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.53 Total: -58.34 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.06 Total: -12.45 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.91 -10.21 -41.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597260520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.912 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds