Wall clock time and date at job start Tue Mar 31 2020 10:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.38668 * 120.41604 * 90.00491 * 3 2 1 5 5 C 1.38635 * 118.42061 * 180.02562 * 4 3 2 6 6 C 1.38222 * 119.15671 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.61837 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47114 * 125.00176 * 7 6 5 9 9 O 1.21594 * 120.00125 * 0.02562 * 8 7 6 10 10 N 1.32914 * 119.99779 * 180.02562 * 8 7 6 11 11 C 1.33306 * 119.99551 * 180.02562 * 10 8 7 12 12 C 1.40977 * 126.36136 * 0.02562 * 11 10 8 13 13 C 1.35121 * 108.24282 * 179.97438 * 12 11 10 14 14 N 1.36335 * 108.89697 * 359.97438 * 13 12 11 15 15 C 1.46504 * 125.86121 * 180.02562 * 14 13 12 16 16 C 1.50693 * 109.47307 * 84.97384 * 15 14 13 17 17 H 1.08013 * 120.00077 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00362 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99634 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00281 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47120 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47135 * 119.99721 * 20 18 16 23 23 H 1.48503 * 109.47129 * 239.99880 * 20 18 16 24 24 N 1.37286 * 126.35249 * 179.70558 * 11 10 8 25 25 H 0.96996 * 126.34828 * 0.02568 * 24 11 10 26 26 N 1.31852 * 120.76923 * 0.02562 * 6 5 4 27 27 C 1.31890 * 121.72233 * 359.70023 * 26 6 5 28 28 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 30 30 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 31 31 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 32 32 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 33 33 H 1.08000 * 120.79259 * 0.02562 * 4 3 2 34 34 H 1.07995 * 120.42320 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.47277 * 245.00517 * 7 6 5 36 36 H 1.09010 * 109.46844 * 5.00341 * 7 6 5 37 37 H 1.08004 * 125.87687 * 359.93665 * 12 11 10 38 38 H 1.08000 * 125.55111 * 179.97438 * 13 12 11 39 39 H 1.09002 * 109.46533 * 204.97462 * 15 14 13 40 40 H 1.09005 * 109.47117 * 324.97327 * 15 14 13 41 41 H 0.97003 * 120.00127 * 180.02562 * 19 18 16 42 42 H 1.08003 * 119.61630 * 180.31786 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2664 2.0828 1.1958 5 6 2.7277 3.3892 1.1476 6 6 2.9379 3.9842 -0.0822 7 6 3.4386 5.4041 -0.1468 8 6 4.6918 5.4573 -0.9822 9 8 5.1356 4.4396 -1.4781 10 7 5.3119 6.6167 -1.1769 11 6 6.4201 6.6638 -1.9163 12 6 7.0479 5.5732 -2.5518 13 6 8.1400 6.0333 -3.2009 14 7 8.2354 7.3792 -3.0055 15 6 9.2810 8.2526 -3.5441 16 6 8.9101 8.6776 -4.9415 17 1 7.9878 8.3314 -5.3844 18 6 9.7484 9.5076 -5.6551 19 7 10.8716 9.9288 -5.1160 20 14 9.2882 10.0351 -7.3870 21 1 7.9844 9.4294 -7.7589 22 1 9.1805 11.5152 -7.4415 23 1 10.3342 9.5795 -8.3376 24 7 7.1585 7.7845 -2.2053 25 1 6.9707 8.6888 -1.9090 26 7 2.7045 3.3241 -1.1996 27 6 2.2705 2.0787 -1.1916 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0935 1.5922 2.1423 34 1 2.9203 3.9352 2.0592 35 1 2.6749 6.0386 -0.5966 36 1 3.6581 5.7581 0.8605 37 1 6.7137 4.5465 -2.5239 38 1 8.8256 5.4326 -3.7801 39 1 9.3801 9.1340 -2.9105 40 1 10.2282 7.7136 -3.5677 41 1 11.4613 10.5131 -5.6179 42 1 2.0953 1.5685 -2.1272 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597260520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:18 Heat of formation + Delta-G solvation = 72.432854 kcal Electronic energy + Delta-G solvation = -24239.863871 eV Core-core repulsion = 20607.574872 eV Total energy + Delta-G solvation = -3632.288999 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.33396 -41.29109 -39.70838 -36.06931 -35.69479 -34.55573 -33.24746 -32.54387 -32.47833 -31.95225 -29.07997 -28.07847 -25.21594 -24.67447 -24.30024 -23.01874 -22.70464 -21.89316 -20.45089 -18.90063 -18.34944 -17.68601 -17.30741 -16.92790 -16.67470 -16.35225 -16.16071 -15.96898 -15.67737 -15.33734 -14.88362 -14.64450 -14.46387 -14.40477 -14.24252 -13.98259 -13.80859 -13.66312 -13.34824 -13.13446 -12.90846 -12.76837 -12.65866 -12.34577 -12.12513 -12.02232 -11.79113 -11.20358 -10.84388 -10.76897 -10.62281 -10.51093 -10.17158 -9.83038 -9.60861 -8.60497 -8.27461 -6.57457 0.19655 0.21720 0.48843 0.59976 1.36052 1.41504 1.50834 1.55992 2.29608 2.72181 2.87862 2.93062 2.97568 3.44950 3.61992 3.89474 3.90327 3.92307 4.11059 4.15469 4.34541 4.40635 4.49279 4.53665 4.55707 4.67770 4.76408 4.83892 4.84734 4.89102 4.96146 5.09715 5.12506 5.14370 5.25073 5.28390 5.40272 5.47563 5.50324 5.68888 5.88700 5.98561 6.12178 6.42805 6.62811 6.90690 7.16445 7.24102 7.93306 8.65022 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.030699 B = 0.002138 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.868071 B =13095.415818 C =13448.340135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.075 4.075 3 C -0.139 4.139 4 C -0.078 4.078 5 C -0.166 4.166 6 C 0.115 3.885 7 C -0.061 4.061 8 C 0.485 3.515 9 O -0.598 6.598 10 N -0.714 5.714 11 C 0.455 3.545 12 C -0.346 4.346 13 C 0.178 3.822 14 N -0.344 5.344 15 C 0.266 3.734 16 C -0.566 4.566 17 H 0.058 0.942 18 C 0.031 3.969 19 N -0.912 5.912 20 Si 0.964 3.036 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.273 1.273 24 N -0.462 5.462 25 H 0.453 0.547 26 N -0.495 5.495 27 C 0.081 3.919 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.170 0.830 38 H 0.224 0.776 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.274 0.726 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.317 -13.813 11.442 22.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.141 4.141 4 C -0.104 4.104 5 C -0.186 4.186 6 C -0.022 4.022 7 C -0.101 4.101 8 C 0.271 3.729 9 O -0.480 6.480 10 N -0.479 5.479 11 C 0.206 3.794 12 C -0.378 4.378 13 C 0.032 3.968 14 N -0.129 5.129 15 C 0.149 3.851 16 C -0.604 4.604 17 H 0.076 0.924 18 C -0.172 4.172 19 N -0.549 5.549 20 Si 0.789 3.211 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.198 1.198 24 N -0.185 5.185 25 H 0.302 0.698 26 N -0.204 5.204 27 C -0.077 4.077 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.182 0.818 34 H 0.176 0.824 35 H 0.123 0.877 36 H 0.143 0.857 37 H 0.188 0.812 38 H 0.240 0.760 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.935 -12.806 10.665 21.097 hybrid contribution 0.083 0.230 -0.518 0.573 sum -12.853 -12.576 10.147 20.647 Atomic orbital electron populations 1.21734 0.93874 1.02633 1.01846 1.20509 0.96649 0.90124 1.04057 1.21197 1.00293 0.98911 0.93730 1.21794 0.95627 0.93753 0.99197 1.22214 1.01096 0.96738 0.98551 1.20989 0.95924 0.95925 0.89386 1.20197 0.95022 0.92533 1.02304 1.21105 0.86965 0.83875 0.80907 1.90529 1.67193 1.39978 1.50324 1.68804 1.13616 1.30969 1.34517 1.19440 0.88012 0.84546 0.87432 1.22345 1.01439 1.01810 1.12169 1.23398 0.97487 0.81990 0.93899 1.47913 1.16989 1.07592 1.40443 1.19791 0.82703 0.89468 0.93127 1.21627 1.07401 1.31655 0.99748 0.92362 1.25586 0.94418 0.95054 1.02127 1.69962 1.11621 1.34033 1.39327 0.85405 0.78363 0.78061 0.79266 1.19891 1.20348 1.19822 1.44545 1.18761 1.09970 1.45194 0.69834 1.67382 1.10532 1.09975 1.32465 1.22899 0.95670 0.90330 0.98794 0.90717 0.92543 0.93412 0.90362 0.89383 0.81826 0.82383 0.87651 0.85715 0.81248 0.75955 0.93613 0.90897 0.91659 0.82623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.89 71.98 0.71 -0.93 16 2 C -0.08 -1.01 6.09 29.85 0.18 -0.83 16 3 C -0.14 -2.87 5.15 -19.77 -0.10 -2.97 16 4 C -0.08 -1.49 9.86 22.47 0.22 -1.27 16 5 C -0.17 -3.79 9.71 22.36 0.22 -3.57 16 6 C 0.12 3.53 5.76 42.55 0.25 3.78 16 7 C -0.06 -1.87 6.18 29.10 0.18 -1.69 16 8 C 0.49 19.56 7.64 87.94 0.67 20.23 16 9 O -0.60 -27.18 12.24 -4.01 -0.05 -27.23 16 10 N -0.71 -28.92 10.51 -309.87 -3.26 -32.18 16 11 C 0.46 18.11 8.07 133.82 1.08 19.19 16 12 C -0.35 -13.28 9.51 22.22 0.21 -13.06 16 13 C 0.18 5.93 11.46 83.27 0.95 6.88 16 14 N -0.34 -12.61 3.63 -350.80 -1.27 -13.88 16 15 C 0.27 10.89 6.19 85.63 0.53 11.42 16 16 C -0.57 -26.61 9.39 25.60 0.24 -26.37 16 17 H 0.06 2.85 7.81 -2.90 -0.02 2.83 16 18 C 0.03 1.47 5.46 84.65 0.46 1.93 16 19 N -0.91 -45.64 13.29 21.45 0.28 -45.35 16 20 Si 0.96 39.11 29.54 68.60 2.03 41.13 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 24 N -0.46 -16.58 7.37 -54.81 -0.40 -16.98 16 25 H 0.45 14.29 8.96 -213.29 -1.91 12.38 16 26 N -0.50 -16.96 9.22 -183.89 -1.70 -18.65 16 27 C 0.08 2.19 10.86 84.67 0.92 3.11 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 32 H 0.09 0.91 8.10 -2.39 -0.02 0.89 16 33 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.16 2.60 7.95 -2.91 -0.02 2.58 16 35 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.12 3.05 7.87 -2.38 -0.02 3.03 16 37 H 0.17 7.07 5.77 -2.91 -0.02 7.06 16 38 H 0.22 5.58 8.06 -2.91 -0.02 5.55 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.07 2.96 8.14 -2.38 -0.02 2.94 16 41 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 42 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -67.02 364.24 1.49 -65.53 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: -0.87 Total: 31.75 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 6.73 Total: 15.86 kcal Atomic # 7 Polarization: -120.70 SS G_CDS: -6.35 Total: -127.05 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.05 Total: -27.23 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.13 kcal Total: -67.02 1.49 -65.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597260520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.966 kcal (2) G-P(sol) polarization free energy of solvation -67.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds