Wall clock time and date at job start Tue Mar 31 2020 10:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30723 * 126.27160 * 2 1 4 4 N 1.28650 * 110.34072 * 179.97438 * 3 2 1 5 5 C 1.32188 * 109.56643 * 0.02562 * 4 3 2 6 6 C 1.41044 * 133.25696 * 179.97438 * 5 4 3 7 7 C 1.35644 * 119.40433 * 179.73862 * 6 5 4 8 8 C 1.41818 * 119.59352 * 0.54688 * 7 6 5 9 9 C 1.47603 * 119.97866 * 179.71746 * 8 7 6 10 10 O 1.21587 * 119.99775 * 138.58594 * 9 8 7 11 11 N 1.34772 * 120.00165 * 318.58516 * 9 8 7 12 12 C 1.46928 * 120.63001 * 354.16893 * 11 9 8 13 13 C 1.53200 * 108.77386 * 233.60974 * 12 11 9 14 14 C 1.53038 * 109.31171 * 305.36256 * 13 12 11 15 15 C 1.53042 * 109.53891 * 61.36716 * 14 13 12 16 16 H 1.08994 * 109.49987 * 58.61445 * 15 14 13 17 17 C 1.50696 * 109.49753 * 178.68363 * 15 14 13 18 18 H 1.08000 * 120.00156 * 359.93741 * 17 15 14 19 19 C 1.37887 * 119.99871 * 180.20949 * 17 15 14 20 20 N 1.31512 * 119.99671 * 359.72442 * 19 17 15 21 21 Si 1.86803 * 119.99809 * 179.72492 * 19 17 15 22 22 H 1.48498 * 109.47080 * 90.00205 * 21 19 17 23 23 H 1.48496 * 109.46734 * 210.00362 * 21 19 17 24 24 H 1.48499 * 109.47155 * 329.99691 * 21 19 17 25 25 C 1.46938 * 120.60640 * 174.19049 * 11 9 8 26 26 C 1.36491 * 120.04332 * 359.44986 * 8 7 6 27 27 N 1.35843 * 120.38039 * 0.26903 * 26 8 7 28 28 H 1.08999 * 109.47177 * 270.02214 * 1 2 3 29 29 H 1.09003 * 109.47038 * 30.01955 * 1 2 3 30 30 H 1.08998 * 109.47059 * 150.02393 * 1 2 3 31 31 H 1.08000 * 120.30176 * 0.02562 * 6 5 4 32 32 H 1.07997 * 120.20375 * 180.29126 * 7 6 5 33 33 H 1.08995 * 109.59112 * 113.82161 * 12 11 9 34 34 H 1.08993 * 109.58590 * 353.39403 * 12 11 9 35 35 H 1.09001 * 109.49296 * 185.41257 * 13 12 11 36 36 H 1.08998 * 109.52380 * 65.33301 * 13 12 11 37 37 H 1.09002 * 109.45979 * 301.34581 * 14 13 12 38 38 H 1.09004 * 109.45131 * 181.38097 * 14 13 12 39 39 H 0.96998 * 119.99512 * 180.02562 * 20 19 17 40 40 H 1.08996 * 109.61662 * 6.61452 * 25 11 9 41 41 H 1.09008 * 109.55650 * 246.19373 * 25 11 9 42 42 H 1.07993 * 119.81239 * 180.29532 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2804 1.0539 0.0000 4 7 3.5175 0.7008 0.0005 5 6 3.6013 -0.6184 0.0004 6 6 4.6877 -1.5179 0.0003 7 6 4.4471 -2.8528 0.0055 8 6 3.1093 -3.3233 -0.0009 9 6 2.8378 -4.7742 -0.0016 10 8 1.9463 -5.2261 0.6908 11 7 3.5779 -5.5979 -0.7697 12 6 4.5720 -5.0562 -1.7063 13 6 4.2962 -5.6253 -3.1016 14 6 4.2690 -7.1537 -3.0286 15 6 3.1435 -7.6015 -2.0932 16 1 2.1913 -7.2190 -2.4607 17 6 3.0968 -9.1070 -2.0471 18 1 3.7989 -9.6871 -2.6277 19 6 2.1541 -9.7440 -1.2681 20 7 1.2993 -9.0376 -0.5612 21 14 2.0913 -11.6103 -1.2170 22 1 2.9667 -12.1052 -0.1243 23 1 0.6950 -12.0519 -0.9713 24 1 2.5623 -12.1571 -2.5148 25 6 3.4053 -7.0547 -0.6863 26 6 2.0726 -2.4355 -0.0008 27 7 2.3131 -1.0985 -0.0001 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 5.7021 -1.1471 0.0008 32 1 5.2693 -3.5530 0.0102 33 1 5.5725 -5.3453 -1.3849 34 1 4.4944 -3.9693 -1.7331 35 1 5.0829 -5.3077 -3.7860 36 1 3.3334 -5.2610 -3.4599 37 1 5.2237 -7.5161 -2.6473 38 1 4.0973 -7.5617 -4.0247 39 1 0.6364 -9.4857 -0.0129 40 1 2.5583 -7.2865 -0.0407 41 1 4.3107 -7.5069 -0.2812 42 1 1.0553 -2.7979 -0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597907136.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:51 Heat of formation + Delta-G solvation = 72.599095 kcal Electronic energy + Delta-G solvation = -26112.146363 eV Core-core repulsion = 22479.864574 eV Total energy + Delta-G solvation = -3632.281790 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.75767 -40.11543 -37.94467 -36.81413 -34.70015 -33.54269 -32.23353 -31.72851 -30.92927 -29.85365 -27.66928 -25.88372 -25.17494 -24.05227 -23.49899 -21.94988 -21.79916 -20.32690 -18.88835 -18.28989 -17.40990 -16.90682 -16.68525 -16.11828 -15.79598 -15.14652 -14.77565 -14.66202 -14.31836 -14.04994 -13.81423 -13.50806 -13.25759 -13.00879 -12.81068 -12.72921 -12.65960 -12.35308 -12.13884 -12.03275 -11.82187 -11.43672 -11.07127 -10.91817 -10.75016 -10.62711 -10.48682 -10.34930 -10.02008 -9.80750 -9.53048 -9.23094 -9.05416 -8.54613 -8.28810 -7.95642 -6.09365 -4.18200 0.30164 0.71520 1.96224 2.35726 2.85205 3.20727 3.26032 3.32847 3.34750 3.47736 3.81218 4.16059 4.25550 4.35425 4.42971 4.47436 4.55745 5.02600 5.04999 5.13918 5.17433 5.21713 5.33211 5.40953 5.51511 5.53546 5.63609 5.74616 5.79495 5.83967 6.02644 6.04178 6.18108 6.47004 6.51695 6.57005 6.71813 6.84513 6.96409 7.06885 7.50509 7.74095 7.85678 8.01821 8.26511 8.31407 8.52582 8.85919 9.48131 10.95974 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.003344 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.975198 B = 8370.257510 C = 9010.987627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.147 3.853 3 N -0.252 5.252 4 N -0.292 5.292 5 C 0.199 3.801 6 C -0.087 4.087 7 C -0.063 4.063 8 C -0.134 4.134 9 C 0.555 3.445 10 O -0.523 6.523 11 N -0.592 5.592 12 C 0.100 3.900 13 C -0.134 4.134 14 C -0.111 4.111 15 C 0.040 3.960 16 H 0.030 0.970 17 C -0.522 4.522 18 H 0.059 0.941 19 C 0.063 3.937 20 N -0.881 5.881 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.112 3.888 26 C 0.121 3.879 27 N -0.392 5.392 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.264 0.736 40 H 0.125 0.875 41 H 0.047 0.953 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.956 13.556 -0.462 14.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.116 4.116 3 N -0.092 5.092 4 N -0.137 5.137 5 C -0.050 4.050 6 C -0.108 4.108 7 C -0.088 4.088 8 C -0.141 4.141 9 C 0.340 3.660 10 O -0.400 6.400 11 N -0.324 5.324 12 C -0.024 4.024 13 C -0.172 4.172 14 C -0.149 4.149 15 C 0.021 3.979 16 H 0.048 0.952 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.008 4.008 26 C -0.004 4.004 27 N -0.072 5.072 28 H 0.107 0.893 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.180 0.820 32 H 0.173 0.827 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.143 0.857 41 H 0.066 0.934 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 3.659 14.916 0.031 15.358 hybrid contribution -0.326 -2.352 0.011 2.375 sum 3.333 12.564 0.042 12.999 Atomic orbital electron populations 1.20261 0.82864 1.04935 1.04419 1.24994 0.97069 0.80679 1.08811 1.74161 0.96614 1.23399 1.14979 1.74884 1.10866 1.06058 1.21845 1.22441 0.84972 0.92711 1.04918 1.20156 0.97280 0.90527 1.02820 1.21392 0.96114 0.95473 0.95803 1.19830 0.93099 0.95336 1.05857 1.17695 0.82683 0.84167 0.81446 1.90866 1.30471 1.76430 1.42258 1.48442 1.37053 1.09214 1.37685 1.21980 0.92143 0.97912 0.90327 1.21953 1.01360 0.98696 0.95210 1.21640 1.00526 0.92085 1.00655 1.18967 0.93493 0.95531 0.89886 0.95234 1.21070 1.16542 0.90554 1.27880 0.92280 1.25054 0.95217 0.98385 0.95328 1.69871 1.18523 1.35162 1.28251 0.86580 0.77328 0.85633 0.78407 1.20597 1.21179 1.19910 1.22432 1.02803 0.72641 1.02908 1.21627 1.01796 0.79196 0.97741 1.43645 1.09060 1.06791 1.47686 0.89301 0.88290 0.90018 0.82023 0.82665 0.91440 0.90607 0.91963 0.92147 0.93023 0.92860 0.92585 0.85728 0.93429 0.80273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.40 36.01 0.37 -0.14 16 2 C 0.15 1.81 8.14 -154.11 -1.25 0.56 16 3 N -0.25 -3.75 12.18 32.97 0.40 -3.34 16 4 N -0.29 -4.48 12.29 31.19 0.38 -4.10 16 5 C 0.20 2.67 7.92 -155.94 -1.23 1.44 16 6 C -0.09 -0.90 10.09 -39.45 -0.40 -1.30 16 7 C -0.06 -0.67 7.39 -39.14 -0.29 -0.96 16 8 C -0.13 -1.80 5.03 -105.34 -0.53 -2.33 16 9 C 0.56 9.81 7.29 -12.44 -0.09 9.71 16 10 O -0.52 -11.48 16.32 5.29 0.09 -11.39 16 11 N -0.59 -10.45 2.97 -173.96 -0.52 -10.96 16 12 C 0.10 1.33 4.92 -3.71 -0.02 1.32 16 13 C -0.13 -1.94 6.08 -26.61 -0.16 -2.10 16 14 C -0.11 -2.03 5.11 -26.69 -0.14 -2.16 16 15 C 0.04 0.93 2.25 -91.65 -0.21 0.72 16 16 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 17 C -0.52 -13.38 8.56 -34.44 -0.29 -13.68 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 20 N -0.88 -24.45 11.40 55.43 0.63 -23.82 16 21 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C 0.11 2.46 5.41 -3.70 -0.02 2.44 16 26 C 0.12 1.52 10.46 -16.41 -0.17 1.35 16 27 N -0.39 -5.03 2.94 -59.37 -0.17 -5.20 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.16 1.34 6.74 -52.49 -0.35 0.99 16 33 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 34 H 0.08 0.85 4.80 -51.93 -0.25 0.60 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.12 3.26 5.13 -51.93 -0.27 3.00 16 41 H 0.05 1.04 8.14 -51.92 -0.42 0.61 16 42 H 0.18 2.03 8.03 -52.49 -0.42 1.61 16 LS Contribution 343.53 15.07 5.18 5.18 Total: -1.00 -32.22 343.53 -9.04 -41.26 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.48 Total: 0.56 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -4.53 Total: -3.56 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.73 Total: -47.43 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.22 -9.04 -41.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907136.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.855 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds