Wall clock time and date at job start Tue Mar 31 2020 10:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30723 * 126.27160 * 2 1 4 4 N 1.28650 * 110.34072 * 179.97438 * 3 2 1 5 5 C 1.32188 * 109.56643 * 0.02562 * 4 3 2 6 6 C 1.41044 * 133.25696 * 179.97438 * 5 4 3 7 7 C 1.35644 * 119.40433 * 179.73862 * 6 5 4 8 8 C 1.41818 * 119.59352 * 0.54688 * 7 6 5 9 9 C 1.47603 * 119.97866 * 179.71746 * 8 7 6 10 10 O 1.21587 * 119.99775 * 138.58594 * 9 8 7 11 11 N 1.34772 * 120.00165 * 318.58516 * 9 8 7 12 12 C 1.46928 * 120.63001 * 354.16893 * 11 9 8 13 13 C 1.53200 * 108.77386 * 233.60974 * 12 11 9 14 14 C 1.53038 * 109.31171 * 305.36256 * 13 12 11 15 15 C 1.53042 * 109.53891 * 61.36716 * 14 13 12 16 16 H 1.08994 * 109.49987 * 58.61445 * 15 14 13 17 17 C 1.50696 * 109.49753 * 178.68363 * 15 14 13 18 18 H 1.08000 * 120.00156 * 359.93741 * 17 15 14 19 19 C 1.37887 * 119.99871 * 180.20949 * 17 15 14 20 20 N 1.31512 * 119.99671 * 359.72442 * 19 17 15 21 21 Si 1.86803 * 119.99809 * 179.72492 * 19 17 15 22 22 H 1.48498 * 109.47080 * 90.00205 * 21 19 17 23 23 H 1.48496 * 109.46734 * 210.00362 * 21 19 17 24 24 H 1.48499 * 109.47155 * 329.99691 * 21 19 17 25 25 C 1.46938 * 120.60640 * 174.19049 * 11 9 8 26 26 C 1.36491 * 120.04332 * 359.44986 * 8 7 6 27 27 N 1.35843 * 120.38039 * 0.26903 * 26 8 7 28 28 H 1.08999 * 109.47177 * 270.02214 * 1 2 3 29 29 H 1.09003 * 109.47038 * 30.01955 * 1 2 3 30 30 H 1.08998 * 109.47059 * 150.02393 * 1 2 3 31 31 H 1.08000 * 120.30176 * 0.02562 * 6 5 4 32 32 H 1.07997 * 120.20375 * 180.29126 * 7 6 5 33 33 H 1.08995 * 109.59112 * 113.82161 * 12 11 9 34 34 H 1.08993 * 109.58590 * 353.39403 * 12 11 9 35 35 H 1.09001 * 109.49296 * 185.41257 * 13 12 11 36 36 H 1.08998 * 109.52380 * 65.33301 * 13 12 11 37 37 H 1.09002 * 109.45979 * 301.34581 * 14 13 12 38 38 H 1.09004 * 109.45131 * 181.38097 * 14 13 12 39 39 H 0.96998 * 119.99512 * 180.02562 * 20 19 17 40 40 H 1.08996 * 109.61662 * 6.61452 * 25 11 9 41 41 H 1.09008 * 109.55650 * 246.19373 * 25 11 9 42 42 H 1.07993 * 119.81239 * 180.29532 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2804 1.0539 0.0000 4 7 3.5175 0.7008 0.0005 5 6 3.6013 -0.6184 0.0004 6 6 4.6877 -1.5179 0.0003 7 6 4.4471 -2.8528 0.0055 8 6 3.1093 -3.3233 -0.0009 9 6 2.8378 -4.7742 -0.0016 10 8 1.9463 -5.2261 0.6908 11 7 3.5779 -5.5979 -0.7697 12 6 4.5720 -5.0562 -1.7063 13 6 4.2962 -5.6253 -3.1016 14 6 4.2690 -7.1537 -3.0286 15 6 3.1435 -7.6015 -2.0932 16 1 2.1913 -7.2190 -2.4607 17 6 3.0968 -9.1070 -2.0471 18 1 3.7989 -9.6871 -2.6277 19 6 2.1541 -9.7440 -1.2681 20 7 1.2993 -9.0376 -0.5612 21 14 2.0913 -11.6103 -1.2170 22 1 2.9667 -12.1052 -0.1243 23 1 0.6950 -12.0519 -0.9713 24 1 2.5623 -12.1571 -2.5148 25 6 3.4053 -7.0547 -0.6863 26 6 2.0726 -2.4355 -0.0008 27 7 2.3131 -1.0985 -0.0001 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 5.7021 -1.1471 0.0008 32 1 5.2693 -3.5530 0.0102 33 1 5.5725 -5.3453 -1.3849 34 1 4.4944 -3.9693 -1.7331 35 1 5.0829 -5.3077 -3.7860 36 1 3.3334 -5.2610 -3.4599 37 1 5.2237 -7.5161 -2.6473 38 1 4.0973 -7.5617 -4.0247 39 1 0.6364 -9.4857 -0.0129 40 1 2.5583 -7.2865 -0.0407 41 1 4.3107 -7.5069 -0.2812 42 1 1.0553 -2.7979 -0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597907136.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:50 Heat of formation + Delta-G solvation = 54.309538 kcal Electronic energy + Delta-G solvation = -26112.939458 eV Core-core repulsion = 22479.864574 eV Total energy + Delta-G solvation = -3633.074885 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.74088 -41.43337 -39.09440 -38.26605 -35.74704 -35.16908 -33.63951 -32.87757 -31.87555 -31.42623 -28.53724 -27.40623 -26.69127 -25.25031 -24.56811 -23.41400 -22.74130 -21.74007 -20.23860 -19.44560 -18.47331 -18.33007 -17.90446 -17.50221 -17.15300 -16.51308 -16.18781 -15.88811 -15.45908 -15.33268 -15.02893 -14.59925 -14.42633 -14.24021 -14.12260 -13.90754 -13.59007 -13.56448 -13.47671 -13.17936 -12.88920 -12.84566 -12.70116 -12.32338 -12.26778 -12.13273 -11.75295 -11.73058 -11.60019 -11.24914 -10.95345 -10.84679 -10.61984 -10.50491 -9.49126 -9.20635 -8.10222 -6.26257 -0.66261 -0.22215 0.97131 1.32051 1.41990 1.43665 1.53178 1.71025 2.03215 2.27198 2.43371 2.89619 3.17430 3.23250 3.33033 3.45491 3.56760 3.64457 4.02477 4.14177 4.17409 4.30326 4.37065 4.57134 4.61057 4.65740 4.72859 4.75227 4.79957 4.83755 4.87515 4.88511 4.98647 5.11488 5.19132 5.24728 5.28127 5.36630 5.52924 5.61533 5.64138 5.91995 6.00915 6.33921 6.53674 6.86202 7.12732 7.30964 7.44052 8.92982 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.003344 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.975198 B = 8370.257510 C = 9010.987627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.153 3.847 3 N -0.284 5.284 4 N -0.323 5.323 5 C 0.189 3.811 6 C -0.073 4.073 7 C -0.056 4.056 8 C -0.138 4.138 9 C 0.555 3.445 10 O -0.578 6.578 11 N -0.594 5.594 12 C 0.095 3.905 13 C -0.129 4.129 14 C -0.106 4.106 15 C 0.038 3.962 16 H -0.014 1.014 17 C -0.535 4.535 18 H 0.061 0.939 19 C 0.013 3.987 20 N -0.913 5.913 21 Si 0.953 3.047 22 H -0.274 1.274 23 H -0.289 1.289 24 H -0.265 1.265 25 C 0.125 3.875 26 C 0.126 3.874 27 N -0.397 5.397 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.197 0.803 32 H 0.183 0.817 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.260 0.740 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.070 14.382 -1.277 15.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.110 4.110 3 N -0.123 5.123 4 N -0.166 5.166 5 C -0.061 4.061 6 C -0.094 4.094 7 C -0.081 4.081 8 C -0.145 4.145 9 C 0.342 3.658 10 O -0.459 6.459 11 N -0.324 5.324 12 C -0.026 4.026 13 C -0.166 4.166 14 C -0.144 4.144 15 C 0.019 3.981 16 H 0.005 0.995 17 C -0.573 4.573 18 H 0.079 0.921 19 C -0.187 4.187 20 N -0.552 5.552 21 Si 0.779 3.221 22 H -0.200 1.200 23 H -0.216 1.216 24 H -0.190 1.190 25 C 0.004 3.996 26 C 0.001 3.999 27 N -0.077 5.077 28 H 0.122 0.878 29 H 0.131 0.869 30 H 0.114 0.886 31 H 0.214 0.786 32 H 0.201 0.799 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.066 0.934 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 5.818 15.786 -0.820 16.844 hybrid contribution -1.037 -2.583 0.242 2.794 sum 4.781 13.203 -0.579 14.054 Atomic orbital electron populations 1.20516 0.80032 1.06296 1.05772 1.25791 0.98547 0.79994 1.06678 1.74103 0.96938 1.24587 1.16652 1.74795 1.11368 1.07206 1.23277 1.22981 0.85966 0.92669 1.04527 1.20534 0.97945 0.89706 1.01231 1.21555 0.95171 0.96006 0.95339 1.19442 0.94931 0.92462 1.07679 1.18208 0.81506 0.85811 0.80290 1.90839 1.32807 1.77805 1.44424 1.48387 1.37993 1.07525 1.38494 1.22359 0.92165 0.99552 0.88527 1.21930 1.02278 0.95556 0.96885 1.21527 0.98722 0.95146 0.98959 1.18904 0.93450 0.94220 0.91544 0.99546 1.21513 1.16172 0.92411 1.27226 0.92060 1.25827 0.95103 1.02551 0.95196 1.70061 1.19276 1.36642 1.29193 0.85624 0.77019 0.80715 0.78723 1.20003 1.21551 1.18961 1.21809 1.00837 0.75748 1.01239 1.21651 1.02096 0.79148 0.96974 1.43741 1.09255 1.06750 1.47982 0.87833 0.86904 0.88643 0.78628 0.79944 0.88382 0.87552 0.87742 0.93540 0.91910 0.93284 0.93137 0.90250 0.93411 0.79731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.40 71.24 0.74 -0.20 16 2 C 0.15 3.59 8.14 137.67 1.12 4.71 16 3 N -0.28 -8.24 12.18 -49.61 -0.60 -8.85 16 4 N -0.32 -9.55 12.29 -55.23 -0.68 -10.23 16 5 C 0.19 4.69 7.92 134.11 1.06 5.75 16 6 C -0.07 -1.26 10.09 22.36 0.23 -1.04 16 7 C -0.06 -1.00 7.39 22.55 0.17 -0.83 16 8 C -0.14 -3.47 5.03 -20.33 -0.10 -3.57 16 9 C 0.55 19.55 7.29 86.72 0.63 20.18 16 10 O -0.58 -26.45 16.32 -3.99 -0.07 -26.51 16 11 N -0.59 -20.49 2.97 -822.55 -2.45 -22.94 16 12 C 0.10 2.21 4.92 86.36 0.43 2.63 16 13 C -0.13 -3.33 6.08 30.67 0.19 -3.14 16 14 C -0.11 -3.70 5.11 30.62 0.16 -3.54 16 15 C 0.04 1.78 2.25 -11.46 -0.03 1.76 16 16 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 17 C -0.53 -27.92 8.56 25.60 0.22 -27.70 16 18 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 19 C 0.01 0.69 5.31 84.66 0.45 1.14 16 20 N -0.91 -53.00 11.40 21.45 0.24 -52.75 16 21 Si 0.95 42.55 29.54 68.60 2.03 44.58 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 C 0.13 5.66 5.41 86.36 0.47 6.13 16 26 C 0.13 3.03 10.46 83.66 0.87 3.90 16 27 N -0.40 -9.60 2.94 -341.74 -1.00 -10.60 16 28 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 31 H 0.20 1.99 8.06 -2.91 -0.02 1.97 16 32 H 0.18 2.24 6.74 -2.91 -0.02 2.22 16 33 H 0.10 1.77 8.12 -2.39 -0.02 1.75 16 34 H 0.11 1.88 4.80 -2.39 -0.01 1.87 16 35 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 40 H 0.08 4.38 5.13 -2.39 -0.01 4.37 16 41 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.19 4.13 8.03 -2.91 -0.02 4.10 16 Total: -1.00 -75.48 343.53 5.11 -70.37 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 1.04 Total: 10.77 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 6.60 Total: 6.18 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -4.49 Total: -105.37 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.07 Total: -26.51 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -75.48 5.11 -70.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907136.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.675 kcal (2) G-P(sol) polarization free energy of solvation -75.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds