Wall clock time and date at job start Tue Mar 31 2020 11:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47084 * 2 1 4 4 C 1.53005 * 109.46963 * 120.00219 * 2 1 3 5 5 C 1.50696 * 109.47198 * 239.99710 * 2 1 3 6 6 N 1.35387 * 126.56721 * 1.76263 * 5 2 1 7 7 H 0.97001 * 126.13003 * 0.02562 * 6 5 2 8 8 C 1.35851 * 107.73520 * 179.97438 * 6 5 2 9 9 N 1.30171 * 109.00489 * 0.02562 * 8 6 5 10 10 C 1.35768 * 108.87110 * 359.72972 * 9 8 6 11 11 C 1.47284 * 126.23933 * 180.27449 * 10 9 8 12 12 O 1.21621 * 119.99941 * 174.54977 * 11 10 9 13 13 N 1.34777 * 119.99863 * 354.54188 * 11 10 9 14 14 C 1.39384 * 119.99672 * 185.11346 * 13 11 10 15 15 C 1.38629 * 119.57985 * 186.12114 * 14 13 11 16 16 C 1.40804 * 118.79195 * 179.77782 * 15 14 13 17 17 C 1.41539 * 120.99529 * 180.23978 * 16 15 14 18 18 H 1.07998 * 120.00111 * 209.26728 * 17 16 15 19 19 C 1.40034 * 119.99852 * 29.26777 * 17 16 15 20 20 N 1.30740 * 119.99973 * 8.09391 * 19 17 16 21 21 Si 1.86800 * 119.99695 * 188.09448 * 19 17 16 22 22 H 1.48504 * 109.47297 * 89.99891 * 21 19 17 23 23 H 1.48500 * 109.47084 * 209.99641 * 21 19 17 24 24 H 1.48492 * 109.47363 * 329.99822 * 21 19 17 25 25 C 1.41184 * 118.00740 * 0.48939 * 16 15 14 26 26 C 1.37577 * 119.02211 * 359.74877 * 25 16 15 27 27 N 1.32088 * 121.11496 * 0.02562 * 26 25 16 28 28 H 1.09005 * 109.47140 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47310 * 60.00005 * 1 2 3 30 30 H 1.09004 * 109.47140 * 299.99729 * 1 2 3 31 31 H 1.09002 * 109.47114 * 70.70796 * 3 2 1 32 32 H 1.09001 * 109.46896 * 190.70480 * 3 2 1 33 33 H 1.08997 * 109.47280 * 310.70209 * 3 2 1 34 34 H 1.08994 * 109.47444 * 65.25741 * 4 2 1 35 35 H 1.09003 * 109.46886 * 185.25524 * 4 2 1 36 36 H 1.09003 * 109.47191 * 305.25200 * 4 2 1 37 37 H 1.08000 * 125.49436 * 180.02562 * 8 6 5 38 38 H 0.96999 * 120.00524 * 5.11463 * 13 11 10 39 39 H 1.07998 * 120.60374 * 359.97438 * 15 14 13 40 40 H 0.97000 * 119.99482 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.48664 * 179.77685 * 25 16 15 42 42 H 1.08002 * 119.44706 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 2.0323 -0.7104 -1.2304 6 7 1.2765 -1.2429 -2.2194 7 1 0.3076 -1.2362 -2.2655 8 6 2.1184 -1.7872 -3.1362 9 7 3.3463 -1.6070 -2.7437 10 6 3.3362 -0.9353 -1.5639 11 6 4.5171 -0.5268 -0.7844 12 8 4.3813 0.1588 0.2110 13 7 5.7483 -0.9128 -1.1740 14 6 6.8551 -0.6173 -0.3800 15 6 8.1285 -0.9040 -0.8471 16 6 9.2350 -0.5942 -0.0333 17 6 10.5557 -0.8623 -0.4659 18 1 11.3277 -1.0781 0.2578 19 6 10.8614 -0.8476 -1.8324 20 7 9.9722 -0.4335 -2.6968 21 14 12.5397 -1.4197 -2.4202 22 1 12.4959 -2.8777 -2.6992 23 1 12.9053 -0.6892 -3.6602 24 1 13.5519 -1.1473 -1.3684 25 6 8.9873 -0.0132 1.2294 26 6 7.6875 0.2299 1.6089 27 7 6.6766 -0.0713 0.8139 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 1.8410 1.8982 0.9700 32 1 3.1131 1.4484 -0.1909 33 1 1.5293 2.0084 -0.7791 34 1 1.7556 -1.7725 1.2034 35 1 3.1259 -0.6405 1.2976 36 1 1.6018 -0.2647 2.1368 37 1 1.8173 -2.2885 -4.0442 38 1 5.8641 -1.3962 -2.0070 39 1 8.2694 -1.3538 -1.8187 40 1 10.1838 -0.4237 -3.6433 41 1 9.8063 0.2372 1.8875 42 1 7.4902 0.6746 2.5732 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601328519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:27 Heat of formation + Delta-G solvation = 56.430267 kcal Electronic energy + Delta-G solvation = -26020.844667 eV Core-core repulsion = 22387.861744 eV Total energy + Delta-G solvation = -3632.982923 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.32902 -39.28540 -37.70217 -36.62784 -34.18621 -33.58099 -32.59370 -30.46402 -29.38206 -28.35466 -27.22420 -27.02118 -25.90935 -23.77434 -22.07158 -21.83824 -21.13727 -20.22884 -19.00311 -17.79628 -17.54120 -16.31234 -15.52091 -15.40165 -15.16200 -14.62108 -14.60049 -14.47387 -14.12860 -14.07610 -13.69072 -13.58307 -13.12862 -12.71128 -12.55872 -12.43756 -12.38748 -12.04448 -11.44103 -11.38908 -11.20512 -11.15460 -10.93497 -10.84912 -10.82821 -10.20284 -10.14473 -10.09365 -10.01963 -9.52432 -9.27380 -9.22681 -8.41698 -7.86694 -7.69953 -6.90978 -6.67442 -4.55498 1.69009 2.43894 2.85009 2.88047 2.93093 3.07422 3.10695 3.31253 3.84100 3.92499 4.02717 4.38639 4.63575 4.71958 4.78231 4.90385 5.11691 5.26903 5.38906 5.48838 5.60633 5.74040 5.75081 5.84023 5.96072 6.03746 6.13408 6.16563 6.18456 6.48317 6.62229 6.69685 6.75999 6.85769 6.86102 7.06472 7.16578 7.20437 7.46693 7.56457 7.74283 7.92557 8.08733 8.32942 8.50855 8.78516 8.83290 9.01947 9.73846 10.19752 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.021610 B = 0.003468 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.407283 B = 8073.033053 C = 9094.440080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.013 3.987 3 C -0.150 4.150 4 C -0.156 4.156 5 C 0.076 3.924 6 N -0.566 5.566 7 H 0.420 0.580 8 C 0.178 3.822 9 N -0.460 5.460 10 C -0.054 4.054 11 C 0.585 3.415 12 O -0.471 6.471 13 N -0.642 5.642 14 C 0.337 3.663 15 C -0.233 4.233 16 C 0.144 3.856 17 C -0.459 4.459 18 H 0.081 0.919 19 C 0.075 3.925 20 N -0.796 5.796 21 Si 0.914 3.086 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.262 1.262 25 C -0.281 4.281 26 C 0.117 3.883 27 N -0.550 5.550 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.107 0.893 36 H 0.056 0.944 37 H 0.212 0.788 38 H 0.415 0.585 39 H 0.130 0.870 40 H 0.281 0.719 41 H 0.101 0.899 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.296 -2.016 -1.729 17.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.012 3.988 3 C -0.207 4.207 4 C -0.213 4.213 5 C -0.045 4.045 6 N -0.169 5.169 7 H 0.258 0.742 8 C -0.107 4.107 9 N -0.180 5.180 10 C -0.183 4.183 11 C 0.371 3.629 12 O -0.344 6.344 13 N -0.286 5.286 14 C 0.112 3.888 15 C -0.258 4.258 16 C 0.136 3.864 17 C -0.490 4.490 18 H 0.099 0.901 19 C -0.143 4.143 20 N -0.422 5.422 21 Si 0.739 3.261 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.305 4.305 26 C -0.038 4.038 27 N -0.269 5.269 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.125 0.875 36 H 0.075 0.925 37 H 0.229 0.771 38 H 0.251 0.749 39 H 0.148 0.852 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.544 -1.588 -1.421 17.673 hybrid contribution 0.334 -0.514 -1.062 1.226 sum -17.210 -2.102 -2.483 17.515 Atomic orbital electron populations 1.22033 0.94943 1.01464 1.02494 1.19075 0.94020 0.95867 0.89873 1.22145 1.05415 0.92122 1.01060 1.22202 1.06533 0.98120 0.94486 1.21191 0.90786 0.99983 0.92568 1.43139 1.10483 1.44797 1.18507 0.74156 1.25084 0.84922 1.03354 0.97319 1.70631 1.20973 1.15488 1.10875 1.20585 0.92748 1.08565 0.96438 1.16938 0.81556 0.80392 0.84028 1.90654 1.84292 1.34932 1.24506 1.43213 1.04919 1.56210 1.24271 1.18196 0.84933 0.96200 0.89465 1.21645 0.89412 1.10900 1.03855 1.17578 0.93072 0.86060 0.89728 1.19551 0.94799 1.42649 0.92044 0.90132 1.25928 0.99153 0.92482 0.96718 1.69746 1.35137 1.33741 1.03594 0.86212 0.81724 0.79475 0.78693 1.19304 1.20267 1.18628 1.21938 0.96570 1.11209 1.00807 1.21741 0.88436 0.96744 0.96877 1.67182 1.34888 1.20619 1.04220 0.92865 0.92909 0.91234 0.92170 0.88178 0.94127 0.93963 0.87486 0.92456 0.77125 0.74894 0.85231 0.90824 0.88033 0.85897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 7.54 37.16 0.28 -1.03 16 2 C 0.01 0.16 0.75 -155.66 -0.12 0.05 16 3 C -0.15 -2.07 8.18 37.16 0.30 -1.76 16 4 C -0.16 -2.16 8.18 37.16 0.30 -1.86 16 5 C 0.08 1.02 5.59 -81.67 -0.46 0.56 16 6 N -0.57 -5.42 5.83 -10.11 -0.06 -5.48 16 7 H 0.42 2.42 8.11 -40.82 -0.33 2.09 16 8 C 0.18 1.88 13.04 -89.90 -1.17 0.71 16 9 N -0.46 -7.05 11.02 -11.03 -0.12 -7.17 16 10 C -0.05 -0.92 6.78 -83.09 -0.56 -1.48 16 11 C 0.58 11.90 7.30 -12.58 -0.09 11.81 16 12 O -0.47 -10.16 8.34 5.26 0.04 -10.11 16 13 N -0.64 -13.92 5.38 -12.51 -0.07 -13.99 16 14 C 0.34 8.41 7.40 -154.76 -1.14 7.27 16 15 C -0.23 -6.10 8.58 -38.47 -0.33 -6.43 16 16 C 0.14 3.85 5.57 -106.55 -0.59 3.26 16 17 C -0.46 -12.03 9.13 -37.65 -0.34 -12.37 16 18 H 0.08 2.02 7.86 -52.49 -0.41 1.61 16 19 C 0.08 1.86 5.32 -17.34 -0.09 1.77 16 20 N -0.80 -20.35 10.81 55.55 0.60 -19.75 16 21 Si 0.91 18.49 29.57 -169.99 -5.03 13.46 16 22 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 25 C -0.28 -6.96 9.90 -38.71 -0.38 -7.35 16 26 C 0.12 2.79 11.15 -17.68 -0.20 2.59 16 27 N -0.55 -13.91 7.90 -12.53 -0.10 -14.01 16 28 H 0.05 0.40 8.13 -51.93 -0.42 -0.02 16 29 H 0.05 0.39 8.05 -51.93 -0.42 -0.03 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 32 H 0.10 1.76 4.68 -51.93 -0.24 1.52 16 33 H 0.04 0.50 8.11 -51.93 -0.42 0.08 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.11 1.90 4.63 -51.93 -0.24 1.66 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.21 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.41 8.32 8.42 -40.82 -0.34 7.98 16 39 H 0.13 3.43 6.28 -52.49 -0.33 3.10 16 40 H 0.28 6.55 8.29 -40.82 -0.34 6.21 16 41 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 42 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 LS Contribution 343.84 15.07 5.18 5.18 Total: -1.00 -31.74 343.84 -9.40 -41.14 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -5.25 Total: 14.99 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -4.60 Total: -4.26 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.25 Total: -60.40 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.04 Total: -10.11 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.74 -9.40 -41.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601328519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.567 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds