Wall clock time and date at job start Tue Mar 31 2020 11:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47084 * 2 1 4 4 C 1.53005 * 109.46963 * 120.00219 * 2 1 3 5 5 C 1.50696 * 109.47198 * 239.99710 * 2 1 3 6 6 N 1.35387 * 126.56721 * 1.76263 * 5 2 1 7 7 H 0.97001 * 126.13003 * 0.02562 * 6 5 2 8 8 C 1.35851 * 107.73520 * 179.97438 * 6 5 2 9 9 N 1.30171 * 109.00489 * 0.02562 * 8 6 5 10 10 C 1.35768 * 108.87110 * 359.72972 * 9 8 6 11 11 C 1.47284 * 126.23933 * 180.27449 * 10 9 8 12 12 O 1.21621 * 119.99941 * 174.54977 * 11 10 9 13 13 N 1.34777 * 119.99863 * 354.54188 * 11 10 9 14 14 C 1.39384 * 119.99672 * 185.11346 * 13 11 10 15 15 C 1.38629 * 119.57985 * 186.12114 * 14 13 11 16 16 C 1.40804 * 118.79195 * 179.77782 * 15 14 13 17 17 C 1.41539 * 120.99529 * 180.23978 * 16 15 14 18 18 H 1.07998 * 120.00111 * 209.26728 * 17 16 15 19 19 C 1.40034 * 119.99852 * 29.26777 * 17 16 15 20 20 N 1.30740 * 119.99973 * 8.09391 * 19 17 16 21 21 Si 1.86800 * 119.99695 * 188.09448 * 19 17 16 22 22 H 1.48504 * 109.47297 * 89.99891 * 21 19 17 23 23 H 1.48500 * 109.47084 * 209.99641 * 21 19 17 24 24 H 1.48492 * 109.47363 * 329.99822 * 21 19 17 25 25 C 1.41184 * 118.00740 * 0.48939 * 16 15 14 26 26 C 1.37577 * 119.02211 * 359.74877 * 25 16 15 27 27 N 1.32088 * 121.11496 * 0.02562 * 26 25 16 28 28 H 1.09005 * 109.47140 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47310 * 60.00005 * 1 2 3 30 30 H 1.09004 * 109.47140 * 299.99729 * 1 2 3 31 31 H 1.09002 * 109.47114 * 70.70796 * 3 2 1 32 32 H 1.09001 * 109.46896 * 190.70480 * 3 2 1 33 33 H 1.08997 * 109.47280 * 310.70209 * 3 2 1 34 34 H 1.08994 * 109.47444 * 65.25741 * 4 2 1 35 35 H 1.09003 * 109.46886 * 185.25524 * 4 2 1 36 36 H 1.09003 * 109.47191 * 305.25200 * 4 2 1 37 37 H 1.08000 * 125.49436 * 180.02562 * 8 6 5 38 38 H 0.96999 * 120.00524 * 5.11463 * 13 11 10 39 39 H 1.07998 * 120.60374 * 359.97438 * 15 14 13 40 40 H 0.97000 * 119.99482 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.48664 * 179.77685 * 25 16 15 42 42 H 1.08002 * 119.44706 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 2.0323 -0.7104 -1.2304 6 7 1.2765 -1.2429 -2.2194 7 1 0.3076 -1.2362 -2.2655 8 6 2.1184 -1.7872 -3.1362 9 7 3.3463 -1.6070 -2.7437 10 6 3.3362 -0.9353 -1.5639 11 6 4.5171 -0.5268 -0.7844 12 8 4.3813 0.1588 0.2110 13 7 5.7483 -0.9128 -1.1740 14 6 6.8551 -0.6173 -0.3800 15 6 8.1285 -0.9040 -0.8471 16 6 9.2350 -0.5942 -0.0333 17 6 10.5557 -0.8623 -0.4659 18 1 11.3277 -1.0781 0.2578 19 6 10.8614 -0.8476 -1.8324 20 7 9.9722 -0.4335 -2.6968 21 14 12.5397 -1.4197 -2.4202 22 1 12.4959 -2.8777 -2.6992 23 1 12.9053 -0.6892 -3.6602 24 1 13.5519 -1.1473 -1.3684 25 6 8.9873 -0.0132 1.2294 26 6 7.6875 0.2299 1.6089 27 7 6.6766 -0.0713 0.8139 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 1.8410 1.8982 0.9700 32 1 3.1131 1.4484 -0.1909 33 1 1.5293 2.0084 -0.7791 34 1 1.7556 -1.7725 1.2034 35 1 3.1259 -0.6405 1.2976 36 1 1.6018 -0.2647 2.1368 37 1 1.8173 -2.2885 -4.0442 38 1 5.8641 -1.3962 -2.0070 39 1 8.2694 -1.3538 -1.8187 40 1 10.1838 -0.4237 -3.6433 41 1 9.8063 0.2372 1.8875 42 1 7.4902 0.6746 2.5732 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601328519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:26 Heat of formation + Delta-G solvation = 37.328393 kcal Electronic energy + Delta-G solvation = -26021.672987 eV Core-core repulsion = 22387.861744 eV Total energy + Delta-G solvation = -3633.811242 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.34162 -40.99424 -39.39908 -37.69557 -36.02712 -35.33304 -33.63242 -32.42008 -30.77112 -29.83413 -28.12209 -28.09127 -27.86370 -25.17774 -23.79738 -23.02130 -22.64874 -21.51409 -20.41379 -19.39126 -18.81747 -17.91408 -17.13100 -16.90160 -16.58137 -16.04016 -15.90048 -15.66020 -15.58735 -15.49925 -15.24108 -14.72564 -14.61508 -14.31285 -14.16478 -14.09283 -13.20386 -13.16358 -13.00198 -12.87141 -12.68267 -12.46905 -12.40799 -12.11048 -11.91912 -11.87215 -11.82664 -11.33302 -11.14742 -11.11679 -10.99883 -10.78994 -9.86773 -9.60025 -9.50055 -8.78326 -8.55946 -6.56385 0.43456 0.95150 1.02775 1.41134 1.52345 1.55070 1.64218 1.94500 2.21772 2.35866 2.57860 2.88773 3.43646 3.59011 3.76622 3.82548 4.04350 4.06377 4.30499 4.35732 4.40728 4.66741 4.77527 4.78452 4.85298 4.88077 4.90462 4.94376 5.00904 5.07050 5.08531 5.15233 5.24594 5.25423 5.43460 5.49824 5.57120 5.58079 5.79763 5.95344 6.15249 6.38692 6.53138 6.63430 6.81538 6.85988 6.89994 7.39920 7.83465 8.33371 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.021610 B = 0.003468 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.407283 B = 8073.033053 C = 9094.440080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.013 3.987 3 C -0.147 4.147 4 C -0.153 4.153 5 C 0.089 3.911 6 N -0.545 5.545 7 H 0.443 0.557 8 C 0.205 3.795 9 N -0.506 5.506 10 C -0.094 4.094 11 C 0.575 3.425 12 O -0.488 6.488 13 N -0.647 5.647 14 C 0.336 3.664 15 C -0.255 4.255 16 C 0.117 3.883 17 C -0.488 4.488 18 H 0.085 0.915 19 C 0.034 3.966 20 N -0.824 5.824 21 Si 0.992 3.008 22 H -0.261 1.261 23 H -0.269 1.269 24 H -0.257 1.257 25 C -0.295 4.295 26 C 0.114 3.886 27 N -0.567 5.567 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.263 0.737 38 H 0.418 0.582 39 H 0.118 0.882 40 H 0.289 0.711 41 H 0.118 0.882 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.510 -2.598 -2.810 19.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.011 3.989 3 C -0.204 4.204 4 C -0.210 4.210 5 C -0.035 4.035 6 N -0.149 5.149 7 H 0.286 0.714 8 C -0.080 4.080 9 N -0.226 5.226 10 C -0.222 4.222 11 C 0.363 3.637 12 O -0.361 6.361 13 N -0.292 5.292 14 C 0.110 3.890 15 C -0.281 4.281 16 C 0.108 3.892 17 C -0.519 4.519 18 H 0.103 0.897 19 C -0.182 4.182 20 N -0.451 5.451 21 Si 0.812 3.188 22 H -0.185 1.185 23 H -0.193 1.193 24 H -0.180 1.180 25 C -0.318 4.318 26 C -0.040 4.040 27 N -0.286 5.286 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.278 0.722 38 H 0.255 0.745 39 H 0.136 0.864 40 H 0.100 0.900 41 H 0.136 0.864 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -19.821 -2.166 -2.499 20.095 hybrid contribution 0.890 -0.314 -0.743 1.201 sum -18.931 -2.480 -3.242 19.366 Atomic orbital electron populations 1.21986 0.91189 1.03075 1.03942 1.19107 0.96859 0.94319 0.88602 1.22041 1.02815 0.93712 1.01852 1.22093 1.03772 0.98945 0.96185 1.21213 0.90059 0.98964 0.93238 1.43055 1.11542 1.43363 1.16976 0.71391 1.26049 0.83543 1.00734 0.97717 1.70559 1.23925 1.17150 1.10972 1.20163 0.92462 1.11692 0.97853 1.17531 0.81955 0.79891 0.84279 1.90659 1.84671 1.35444 1.25368 1.43296 1.04962 1.56706 1.24189 1.18422 0.85739 0.95233 0.89614 1.21584 0.90158 1.12577 1.03752 1.18004 0.93762 0.86611 0.90800 1.19861 0.94832 1.43911 0.93318 0.89708 1.26863 1.03324 0.91795 0.96203 1.69821 1.37246 1.33729 1.04255 0.85053 0.76357 0.79095 0.78276 1.18541 1.19331 1.18037 1.22133 0.97505 1.11575 1.00633 1.22267 0.88062 0.95881 0.97778 1.67327 1.35413 1.21337 1.04565 0.91147 0.91011 0.90387 0.91630 0.92369 0.92596 0.93417 0.91734 0.91049 0.72158 0.74544 0.86387 0.90023 0.86415 0.82780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 7.54 71.98 0.54 -1.39 16 2 C 0.01 0.29 0.75 -52.93 -0.04 0.25 16 3 C -0.15 -3.98 8.18 71.98 0.59 -3.39 16 4 C -0.15 -4.17 8.18 71.98 0.59 -3.58 16 5 C 0.09 2.25 5.59 41.59 0.23 2.49 16 6 N -0.54 -8.45 5.83 -185.88 -1.08 -9.54 16 7 H 0.44 2.87 8.11 -92.71 -0.75 2.11 16 8 C 0.21 3.65 13.04 180.10 2.35 6.00 16 9 N -0.51 -15.15 11.02 -188.82 -2.08 -17.23 16 10 C -0.09 -3.22 6.78 40.50 0.27 -2.94 16 11 C 0.58 24.67 7.30 86.62 0.63 25.30 16 12 O -0.49 -22.26 8.34 -4.10 -0.03 -22.29 16 13 N -0.65 -29.85 5.38 -311.73 -1.68 -31.53 16 14 C 0.34 17.73 7.40 132.78 0.98 18.72 16 15 C -0.26 -14.13 8.58 22.99 0.20 -13.94 16 16 C 0.12 6.50 5.57 -21.11 -0.12 6.38 16 17 C -0.49 -26.34 9.13 23.52 0.21 -26.13 16 18 H 0.08 4.34 7.86 -2.91 -0.02 4.32 16 19 C 0.03 1.69 5.32 85.29 0.45 2.14 16 20 N -0.82 -43.30 10.81 21.84 0.24 -43.06 16 21 Si 0.99 37.93 29.57 68.60 2.03 39.96 16 22 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 23 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 24 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 25 C -0.29 -15.04 9.90 22.84 0.23 -14.82 16 26 C 0.11 5.61 11.15 84.50 0.94 6.56 16 27 N -0.57 -29.92 7.90 -193.57 -1.53 -31.45 16 28 H 0.07 0.73 8.13 -2.38 -0.02 0.71 16 29 H 0.07 0.71 8.05 -2.39 -0.02 0.69 16 30 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.06 1.65 8.11 -2.39 -0.02 1.63 16 32 H 0.06 2.13 4.68 -2.39 -0.01 2.11 16 33 H 0.06 1.29 8.11 -2.39 -0.02 1.27 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 2.39 4.63 -2.39 -0.01 2.38 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.26 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.42 18.02 8.42 -92.71 -0.78 17.24 16 39 H 0.12 6.67 6.28 -2.91 -0.02 6.65 16 40 H 0.29 13.72 8.29 -92.71 -0.77 12.95 16 41 H 0.12 5.45 8.06 -2.91 -0.02 5.42 16 42 H 0.16 6.40 8.06 -2.91 -0.02 6.37 16 Total: -1.00 -74.49 343.84 3.48 -71.01 By element: Atomic # 1 Polarization: 42.92 SS G_CDS: -0.45 Total: 42.47 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 8.07 Total: 1.66 kcal Atomic # 7 Polarization: -126.68 SS G_CDS: -6.13 Total: -132.81 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.03 Total: -22.29 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Total: -74.49 3.48 -71.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601328519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.341 kcal (2) G-P(sol) polarization free energy of solvation -74.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds